mRNA_5104 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174729
Unique NamemRNA_5104
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A835ZIJ3_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ3_9STRA)

HSP 1 Score: 352 bits (903), Expect = 1.290e-122
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1
Query:    1 MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR 546
            MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR
Sbjct:    1 MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR 182          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A835ZHA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.850e-32
Identity = 77/182 (42.31%), Postives = 112/182 (61.54%), Query Frame = 1
Query:   10 VKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEAL-----EMCSTNT-YGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGEN 537
            V G I FS+SS G+TF FTFP+   +A   T       SL  +   +  S   A  +RVL+VDDN +IRK++  MLR++Y CD ACDG EAL        + +T Y ++L+D +MP M+GT+CA  IR  D  TPI+F +GE G  ++ +VD G+NMYLL KP ++ ++++  SA++    N
Sbjct:  459 VNGKIDFSTSSRGTTFWFTFPLMN-SADAST-------SLEGSDMRSTSSAHDAQLRRVLIVDDNHIIRKLFVNMLREEYICDTACDGAEALLKYRKAYANADTAYDVLLLDAIMPIMSGTECAVAIRETDESTPIMFCSGEIGNVLKMVVDEGINMYLLLKPARRAKVLETLSAVIRNSRN 632          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A5N5ZBA4_9FLAO (Response regulator n=3 Tax=Kordia TaxID=221065 RepID=A0A5N5ZBA4_9FLAO)

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-15
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  178 QRVLVVDDNSVIRKVYSFMLRDD-YTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTG-ETGMHIQRIVDAGVNMYLLRKPVKKEEMMQL 507
            +R+L+VDDN + R V   +L++  Y CDVA DGL+A+++   NTY LILMD+ MP+++G +    IR +D  TPI+  T  E      RI +AG+N +++ KP    E  Q+
Sbjct:  613 KRILIVDDNKINRVVTKRILQNKGYQCDVAEDGLDAIDVLKVNTYDLILMDINMPRIDGIETTKHIRENDQKTPIIALTAVEEDQVRDRIFEAGMNDFII-KPYDLAEFHQI 723          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A1C7N1D9_9FUNG (Transcription factor SKN7 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1D9_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 1.190e-14
Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  181 RVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
            RVL+VDD+SV R V   ML     + DVA DGLEALE  ST  Y LILMD+VMPKM+G      IRR D +TPIV  T     + I   +  G+N  +L KP  K  +  +
Sbjct:  339 RVLLVDDDSVYRNVCGRMLTMAGCSMDVAKDGLEALERLSTKKYDLILMDIVMPKMDGISTTRNIRRFDSLTPIVSMTSNYNHNDIMEYIGIGMND-ILPKPFSKNTLYDI 448          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A1G1E752_9BACT (Response regulatory domain-containing protein n=1 Tax=Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 TaxID=1801687 RepID=A0A1G1E752_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 2.030e-14
Identity = 44/127 (34.65%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  175 RQRVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVT--PIVFFTGETGM-HIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLS 543
            R+++LVV+D    R + +F L  +DY   +A DGLEAL   S+N Y LI+MDV+MP ++G +   +++ +++    PI+  TG      I + V AG + YLL KP K ++++   +  +  G ++S
Sbjct:    5 RKKILVVEDEKFARDILNFTLSSEDYDISLAEDGLEALNKASSNNYDLIIMDVMMPNIDGYEACRRLKANEITKSIPIILLTGRAQKGDILKGVQAGADDYLL-KPYKLQDLLNRVNKYIGPGTSVS 130          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: UPI00069A4C53 (response regulator n=1 Tax=Kordia zhangzhouensis TaxID=1620405 RepID=UPI00069A4C53)

HSP 1 Score: 80.1 bits (196), Expect = 3.270e-14
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  178 QRVLVVDDNSVIRKVYSFMLRDD-YTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQ-RIVDAGVNMYLLRKPVKKEEMMQL 507
            +R+L+VDDN + R V   +L+   Y C+VA DG+EAL++  TN++ LILMD+ MP ++G +    IR+ D  TPI+  T      I+ RI +AG+N +++ KP    E  Q+
Sbjct:  612 KRILIVDDNKINRVVTKRILQGKGYECEVAEDGIEALDILRTNSFDLILMDINMPNLDGVETTKHIRKIDKRTPIIALTAVEEAQIKDRIQEAGMNDFII-KPYDMAEFHQI 722          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A367KHA6_RHIST (Kinase-regulated stress-responsive transcription factor skn7 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KHA6_RHIST)

HSP 1 Score: 79.7 bits (195), Expect = 3.480e-14
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  181 RVLVVDDNSVIRKVYSFMLRD-DYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
            RVL+VDD+SV R V   ML     + D+A DGLEAL+  S N Y LILMD+VMPKM+G      IRR+D VTPIV  T     + I   +  G+N  +L KP  K  +  +
Sbjct:  261 RVLLVDDDSVYRDVSGRMLTMVGCSIDLAKDGLEALQKMSINKYDLILMDIVMPKMDGIATTRNIRRYDSVTPIVSMTSNYNHNDIMEYIGIGMND-ILPKPFSKNTLYDI 370          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A167MW98_PHYB8 (SKN7 signal transduction response regulator n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167MW98_PHYB8)

HSP 1 Score: 77.0 bits (188), Expect = 4.540e-14
Identity = 41/111 (36.94%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  181 RVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
            R+LVVDD+S+ R + + +L+    T +VA DGLEA+    T++Y ++LMD++MP ++G      IR++D  TPI+  T     H IQ  +++G+N   L KP+ ++ +M +
Sbjct:   66 RILVVDDDSIFRSISTRILQFAGCTIEVAVDGLEAMSKLRTDSYDMVLMDIMMPNLDGISATRNIRQYDSWTPIISVTANQSKHDIQEYLNSGMND-CLAKPLDQQMVMAM 175          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A0B7NS58_9FUNG (Response regulatory domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NS58_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 5.740e-14
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  181 RVLVVDDNSVIRKVYSFMLRD-DYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGE-TGMHIQRIVDAGVNMYLLRKPVKKEEMMQL 507
            RVL+VDD+SV R V   ML     + D+A DG+EAL+M S   Y LILMD+VMPKM+G      IRR+D +TPIV  T   T   I   +  G+N  +L KP  K  +  +
Sbjct:  355 RVLLVDDDSVYRDVSGRMLNMVGCSIDLAKDGVEALQMMSVEKYDLILMDIVMPKMDGIVTTRNIRRYDSLTPIVSMTSNFTHSDIMEYIGIGMND-ILPKPFSKNTLYDI 464          
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A101DE91_ARCFL (Response regulator n=3 Tax=Archaeoglobus fulgidus TaxID=2234 RepID=A0A101DE91_ARCFL)

HSP 1 Score: 74.3 bits (181), Expect = 5.760e-14
Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  181 RVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAIL 522
            +V+VVDD   +R++   ML+D Y    A +G EA+E+       ++LMDV+MP MNG +  ++I++ D    IV  T       +++++AG + Y+L+KP  ++E+++L   IL
Sbjct:    3 KVMVVDDEIAMREILKIMLKD-YKVIEASNGREAVELYREERPDIVLMDVMMPLMNGIEATSEIKKIDPDAKIVAITAYASSKGEKVIEAGAD-YILKKPFTRKEVVELIKRIL 114          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIJ3_9STRA1.290e-122100.00CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A835ZHA7_9STRA1.850e-3242.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5N5ZBA4_9FLAO2.800e-1541.07Response regulator n=3 Tax=Kordia TaxID=221065 Rep... [more]
A0A1C7N1D9_9FUNG1.190e-1446.85Transcription factor SKN7 n=1 Tax=Choanephora cucu... [more]
A0A1G1E752_9BACT2.030e-1434.65Response regulatory domain-containing protein n=1 ... [more]
UPI00069A4C533.270e-1440.18response regulator n=1 Tax=Kordia zhangzhouensis T... [more]
A0A367KHA6_RHIST3.480e-1445.95Kinase-regulated stress-responsive transcription f... [more]
A0A167MW98_PHYB84.540e-1436.94SKN7 signal transduction response regulator n=1 Ta... [more]
A0A0B7NS58_9FUNG5.740e-1445.05Response regulatory domain-containing protein n=1 ... [more]
A0A101DE91_ARCFL5.760e-1434.21Response regulator n=3 Tax=Archaeoglobus fulgidus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:334647..335195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174729|e_gw1.117.24.1
DescriptionHis Kinase A (phosphoacceptor) domain
COG categoryT
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG0642@1|root,COG0745@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,4NDXU@976|Bacteroidetes,1HXPB@117743|Flavobacteriia,2YI3K@290174|Aquimarina
Evalue7.64e-15
Seed ortholog1296415.JACC01000003_gene3126
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-88 viral histidine kinase
Ec32 orthologEc-06_005930.1
TranscriptId175051
TrackFilteredModels1
ProteinId174729
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174729gene_5104Tribonema minus UTEX_B_3156 geneContig_117 334647..335195 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5104_1exon_5104_1Tribonema minus UTEX_B_3156 exonContig_117 334647..335195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5104CDS_5104Tribonema minus UTEX_B_3156 CDSContig_117 334647..335195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174729Trimin1|174729|e_gw1.117.24.1Tribonema minus UTEX_B_3156 polypeptideContig_117 334647..335195 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTGTGAAGGGCGACATCACATTCTCGTCGAGCTCTGCTGGGTC
CACATTCACCTTCACGTTCCCCGTTTCAGGAATTACTGCCTACGTAGGCA
CACCGCCCTCAACACCGATTGACAGCTTGAGCGATGCTAGCTCTGCTGCA
GTGCCGTCGCCTGCCAGTGCAGGCAGGCAACGAGTGCTGGTTGTCGACGA
TAACTCCGTCATTCGCAAGGTGTACAGCTTCATGTTGCGCGACGACTACA
CATGCGATGTCGCCTGCGACGGTCTGGAGGCGCTGGAGATGTGCTCGACG
AACACGTACGGGCTGATCTTGATGGACGTGGTCATGCCCAAGATGAACGG
CACCGACTGCGCCGCGCAGATCCGACGCCACGACCTCGTGACGCCTATAG
TGTTCTTCACGGGCGAAACGGGTATGCACATTCAACGAATCGTTGATGCC
GGGGTGAACATGTACTTGCTGCGCAAACCAGTCAAGAAAGAAGAGATGAT
GCAGCTGTTCAGCGCCATCCTTGTCGGTGGTGAGAACTTGAGCAGATGA
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protein sequence of jgi.p|Trimin1|174729

>Trimin1|174729|e_gw1.117.24.1 ID=Trimin1|174729|e_gw1.117.24.1|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp
MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAA
VPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCST
NTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDA
GVNMYLLRKPVKKEEMMQLFSAILVGGENLSR*
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mRNA from alignment at Contig_117:334647..335195+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )
ATGGAAGCTGTGAAGGGCGACATCACATTCTCGTCGAGCTCTGCTGGGTC CACATTCACCTTCACGTTCCCCGTTTCAGGAATTACTGCCTACGTAGGCA CACCGCCCTCAACACCGATTGACAGCTTGAGCGATGCTAGCTCTGCTGCA GTGCCGTCGCCTGCCAGTGCAGGCAGGCAACGAGTGCTGGTTGTCGACGA TAACTCCGTCATTCGCAAGGTGTACAGCTTCATGTTGCGCGACGACTACA CATGCGATGTCGCCTGCGACGGTCTGGAGGCGCTGGAGATGTGCTCGACG AACACGTACGGGCTGATCTTGATGGACGTGGTCATGCCCAAGATGAACGG CACCGACTGCGCCGCGCAGATCCGACGCCACGACCTCGTGACGCCTATAG TGTTCTTCACGGGCGAAACGGGTATGCACATTCAACGAATCGTTGATGCC GGGGTGAACATGTACTTGCTGCGCAAACCAGTCAAGAAAGAAGAGATGAT GCAGCTGTTCAGCGCCATCCTTGTCGGTGGTGAGAACTTGAGCAGATGA
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Coding sequence (CDS) from alignment at Contig_117:334647..335195+

>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )
ATGGAAGCTGTGAAGGGCGACATCACATTCTCGTCGAGCTCTGCTGGGTC
CACATTCACCTTCACGTTCCCCGTTTCAGGAATTACTGCCTACGTAGGCA
CACCGCCCTCAACACCGATTGACAGCTTGAGCGATGCTAGCTCTGCTGCA
GTGCCGTCGCCTGCCAGTGCAGGCAGGCAACGAGTGCTGGTTGTCGACGA
TAACTCCGTCATTCGCAAGGTGTACAGCTTCATGTTGCGCGACGACTACA
CATGCGATGTCGCCTGCGACGGTCTGGAGGCGCTGGAGATGTGCTCGACG
AACACGTACGGGCTGATCTTGATGGACGTGGTCATGCCCAAGATGAACGG
CACCGACTGCGCCGCGCAGATCCGACGCCACGACCTCGTGACGCCTATAG
TGTTCTTCACGGGCGAAACGGGTATGCACATTCAACGAATCGTTGATGCC
GGGGTGAACATGTACTTGCTGCGCAAACCAGTCAAGAAAGAAGAGATGAT
GCAGCTGTTCAGCGCCATCCTTGTCGGTGGTGAGAACTTGAGCAGATGA
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