mRNA_5153 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174711
Unique NamemRNA_5153
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174711 vs. uniprot
Match: A0A835ZIM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.300e-23
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 LQHEPVQQVLATRGNGVTGLMAAAAHGHATCVTALLXXXXXXXXXXXXXXXXXXXXXXXXXXXTCFMRAQRCATAC 228
            LQHEPVQQVLATRGNGVTGLMAAAAHGHATCVTALLXXXXXXXXXXXXXXXXXXXXXXXXXXXTCFMRAQRCATAC
Sbjct:    1 LQHEPVQQVLATRGNGVTGLMAAAAHGHATCVTALLXXXXXXXXXXXXXXXXXXXXXXXXXXXTCFMRAQRCATAC 76
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZIM3_9STRA9.300e-23100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:481692..481922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174711|e_gw1.117.3.1
Hectar predicted targeting categoryother localisation
TranscriptId175033
TrackFilteredModels1
ProteinId174711
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174711gene_5153Tribonema minus UTEX_B_3156 geneContig_117 481692..481922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5153_1exon_5153_1Tribonema minus UTEX_B_3156 exonContig_117 481692..481922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5153CDS_5153Tribonema minus UTEX_B_3156 CDSContig_117 481692..481922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174711Trimin1|174711|e_gw1.117.3.1Tribonema minus UTEX_B_3156 polypeptideContig_117 481692..481922 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5153 ID=mRNA_5153|Name=jgi.p|Trimin1|174711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_117:481692..481922- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGCACGAACCCGTACAGCAAGTTCTCGCCACACGTGGCAACGGCGT
GACGGGCCTCATGGCGGCAGCCGCACACGGGCACGCCACTTGCGTCACGG
CACTTCTGCAGCACTGTCCAGATGAGCAAGTGCTCGCCAAAGGTGGCACC
GGCATGACGGTCCTCATGGTGGCAGCACACCAAGGGCACACGTGTTTTAT
GAGAGCTCAGCGGTGTGCTACAGCATGCTAA
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protein sequence of jgi.p|Trimin1|174711

>Trimin1|174711|e_gw1.117.3.1 ID=Trimin1|174711|e_gw1.117.3.1|Name=jgi.p|Trimin1|174711|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
LQHEPVQQVLATRGNGVTGLMAAAAHGHATCVTALLQHCPDEQVLAKGGT
GMTVLMVAAHQGHTCFMRAQRCATAC*
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mRNA from alignment at Contig_117:481692..481922-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5153 ID=mRNA_5153|Name=jgi.p|Trimin1|174711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_117:481692..481922- (Tribonema minus UTEX_B_3156 )
CTGCAGCACGAACCCGTACAGCAAGTTCTCGCCACACGTGGCAACGGCGT
GACGGGCCTCATGGCGGCAGCCGCACACGGGCACGCCACTTGCGTCACGG
CACTTCTGCAGCACTGTCCAGATGAGCAAGTGCTCGCCAAAGGTGGCACC
GGCATGACGGTCCTCATGGTGGCAGCACACCAAGGGCACACGTGTTTTAT
GAGAGCTCAGCGGTGTGCTACAGCATGCTAA
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Coding sequence (CDS) from alignment at Contig_117:481692..481922-

>mRNA_5153 ID=mRNA_5153|Name=jgi.p|Trimin1|174711|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_117:481692..481922- (Tribonema minus UTEX_B_3156 )
CTGCAGCACGAACCCGTACAGCAAGTTCTCGCCACACGTGGCAACGGCGT
GACGGGCCTCATGGCGGCAGCCGCACACGGGCACGCCACTTGCGTCACGG
CACTTCTGCAGCACTGTCCAGATGAGCAAGTGCTCGCCAAAGGTGGCACC
GGCATGACGGTCCTCATGGTGGCAGCACACCAAGGGCACACGTGTTTTAT
GAGAGCTCAGCGGTGTGCTACAGCATGCTAA
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