mRNA_5092 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A836CN34_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN34_9STRA) HSP 1 Score: 454 bits (1169), Expect = 1.300e-161 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1
Query: 1 MYAPRKGTGISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSRAQDVGHVQAQKTALNGMCSVSHVALARSVNHMIKVLAGAKVDRDSQCAPVTSDHFHPLLVAAC 687
MYAPRKGTGISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSRAQDVGHVQAQKTALNGMCSVSHVALARSVNHMIKVLAGAKVDRDSQCAPVTSDHFHPLLVAAC
Sbjct: 1 MYAPRKGTGISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSRAQDVGHVQAQKTALNGMCSVSHVALARSVNHMIKVLAGAKVDRDSQCAPVTSDHFHPLLVAAC 229
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A836CJD1_9STRA (Cyclin-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD1_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.790e-66 Identity = 104/157 (66.24%), Postives = 129/157 (82.17%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSR 498
ISPS R LF W+ +A L+L P+TLH+ FSI DR+CA++ VD ELRL GAA+LM+A KYEET+ H VRTY+ +C M Y + EL+ ME+R+LERL+YRLTVPTTYTF+AYA+R+ +GT AQLKRARRYAE ALRDH TLAHLPSEIA+AA+YL+R
Sbjct: 1 ISPSMRSTLFGWVTSAHYELILSPATLHLTFSIIDRYCALEFVDAQELRLLGAASLMMAAKYEETMTHPVRTYLRVCGMVYQRHELLGMEQRVLERLQYRLTVPTTYTFIAYAIREANGTSAQLKRARRYAEIALRDHATLAHLPSEIASAAVYLTR 157
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A6U6K965_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6K965_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.090e-26 Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLS 495
I+ R L DW++ + L P TL++ ++ DR+C+ V ++L+L G AL+IACKYEE VR VYI D +Y++ E++DME+ IL+RL +++TVPT Y F+ + T + A Y E L++H L PS +AA+A+ L+
Sbjct: 32 INAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSHVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDILQRLRFKITVPTAYPFLLRFLNMTKASQLSRIAANYYMERTLQEHDLLKFKPSVVAASAVVLA 187
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A6U6KAA6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KAA6_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.690e-25 Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLS 495
I+ R L DW++ + L P TL++ ++ DR+C+ V ++L+L G AL+IACKYEE VR VYI D +Y++ E++DME+ IL+RL +++TVPT Y F+ + T + A Y E L++H L PS +AA+A+ L+
Sbjct: 273 INAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSHVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDILQRLRFKITVPTAYPFLLRFLNMTKASQLSRIAANYYMERTLQEHDLLKFKPSVVAASAVVLA 428
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A7S2XS29_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS29_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.450e-24 Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = 1
Query: 16 KGTGISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLS 495
K I+ R L DW++ + L P TL++ +I DR+C + + ++L+L G AL+IACKYEE VR VYI D +Y + E++DME+ IL RL +++TVPT Y F+ + T + A+ Y E L+++ L PS + AAA+ L+
Sbjct: 229 KQQDINAKMRAILVDWLVEVHMKFRLNPETLYLCINIIDRYCNLVNIARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYQRQEVLDMEQDILNRLRFKITVPTPYPFLQRFLTLTKASQLTRFAAQYYTERTLQEYDVLKFRPSLVCAAAVILA 388
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A7R9W0K7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0K7_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.790e-24 Identity = 56/156 (35.90%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLS 495
I+ R L DW++ + L P TL++ ++ DR+C++ V ++L+L G AL+IACKYEE VR VYI D +Y++ E++DME+ +L+RL +++TVPT Y F+ + + A Y E L++H L PS +A +A+ L+
Sbjct: 178 INAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSLVTVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDMLQRLRFKITVPTAYPFLQRFLNMAKSSQLARIAANYYTERTLQEHDLLRFKPSVVAVSAVILA 333
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A7S1ZPT4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPT4_TRICV) HSP 1 Score: 109 bits (273), Expect = 3.420e-24 Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLS 495
I+ R L DW++ + L P TL++ +I DR+C+ V ++L+L G AL+IACKYEE VR VYI D +Y++ E++DME+ +L+RL +++TVPT Y F+ + T A Y E L++H L + PS +AA+ + L+
Sbjct: 232 INAKMRAILVDWLVEVHMKFHLVPETLYLCINIIDRYCSQVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDMLQRLRFKITVPTAYPFLQRFLSLTKAPQLAQFAANYYMERTLQEHDLLQYKPSVVAASCVILA 387
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A7S1FQB1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQB1_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.140e-23 Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSR 498
I+ + R L DW+ + L L P TL++ +I DRF + V+ L L A L+IA KYEE + +YICDM+Y K E+IDME+ IL+ L+YR+TVP+ F+ + + +++ L+ +R L + PS++AAA++ L+R
Sbjct: 45 ITENMRIVLVDWLEKVHRTLKLVPETLYLCINIIDRFLEKESVNRQNLHLVSATCLLIAIKYEEVYDLKISDLIYICDMTYTKKEVIDMEQTILKTLKYRITVPSANAFLVRYLEAANANNKVSHISQQVLNGTLKSYRLLKYFPSKLAAASVLLAR 201
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A8J5T8F6_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5T8F6_ZIZPA) HSP 1 Score: 106 bits (264), Expect = 4.950e-23 Identity = 56/157 (35.67%), Postives = 92/157 (58.60%), Query Frame = 1
Query: 28 ISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARRYAESALRDHRTLAHLPSEIAAAAIYLSR 498
++P R L DWI+ + L P TL++ + DR+ ++ V EL+L G AA++IACKYEET V ++ I D +Y + +++ ME+ IL L++ LTVPT Y F+ ++ G A +AE AL+++ ++ PS +AA+A+Y +R
Sbjct: 228 VNPKMRAILTDWIVEVHYKFKLMPETLYLTMYVVDRYLSLQPVLRRELQLVGVAAMLIACKYEETWAPEVSDFICISDNAYSRSQILAMEKNILNMLQWNLTVPTPYVFLVRFVKAAGGDKELEHMAFFFAEMALKEYDLVSLCPSLVAASAVYAAR 384
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Match: A0A2T7DFH4_9POAL (Uncharacterized protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DFH4_9POAL) HSP 1 Score: 101 bits (252), Expect = 8.870e-23 Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 1
Query: 43 RCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDRVDDTELRLFGAAALMIACKYEETVVHSVRTYVYICDMSYHKLELIDMERRILERLEYRLTVPTTYTFMAYAMRDTSGTPAQLKRARR----YAESALRDHRTLAHLPSEIAAAAIYLSR 498
R L DWI+ + L P TL++A I D++ ++ V EL+L G +A++IACKYEE V ++ I D +Y + +++ ME+ IL RLE+ LTVPT+Y F+ ++ S K +AE +L + + HLPS +AA+A+Y +R
Sbjct: 2 RAILADWIIEVHHKFELMPETLYLAMYIVDQYLSLQPVLRRELQLVGVSAMLIACKYEEIWAPEVNDFILISDSAYSREQILSMEKGILNRLEWNLTVPTSYMFLVRFIKAASSGIKTDKEMENMVFFFAELSLMQYGLVTHLPSMVAASAVYAAR 157 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5092 ID=mRNA_5092|Name=jgi.p|Trimin1|174701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_117:284227..284916+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTACGCTCCTCGAAAGGGTACTGGCATATCACCCAGCAGGCGCTGCGGback to top protein sequence of jgi.p|Trimin1|174701 >Trimin1|174701|e_gw1.117.119.1 ID=Trimin1|174701|e_gw1.117.119.1|Name=jgi.p|Trimin1|174701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp MYAPRKGTGISPSRRCGLFDWIMAARKRLMLEPSTLHMAFSIADRFCAVDback to top mRNA from alignment at Contig_117:284227..284916+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5092 ID=mRNA_5092|Name=jgi.p|Trimin1|174701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_117:284227..284916+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:284227..284916+ >mRNA_5092 ID=mRNA_5092|Name=jgi.p|Trimin1|174701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_117:284227..284916+ (Tribonema minus UTEX_B_3156 )back to top |