mRNA_13056 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172786
Unique NamemRNA_13056
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A835YH54_9STRA (MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH54_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.980e-81
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG 393
            LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG
Sbjct:    1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVSVLSYG 131          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A835YXE4_9STRA (MgtC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE4_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.890e-56
Identity = 89/126 (70.63%), Postives = 114/126 (90.48%), Query Frame = 1
Query:    1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKKVS 378
            ++RR S RPAG+RTM+LV+LGAATFT+VSAYGFS GDPGR+AANVASGVGFLGAGTITHPK+ ++GSS++D+DVRGLTTAAAIWI AGLGM+AGAGM+FTA+ GT IT+ VL++ ++++   ++VS
Sbjct:    1 MERRHSHRPAGVRTMSLVALGAATFTIVSAYGFSSGDPGRIAANVASGVGFLGAGTITHPKRYIKGSSDIDSDVRGLTTAAAIWITAGLGMAAGAGMFFTAIAGTVITITVLKMSNLKSVMFRRVS 126          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A1F8LUY7_9CHLR (Magnesium transporter MgtC n=1 Tax=Chloroflexi bacterium RBG_13_46_9 TaxID=1797619 RepID=A0A1F8LUY7_9CHLR)

HSP 1 Score: 111 bits (278), Expect = 5.180e-29
Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372
            +QR  S +PAGIRT+ L+S+GAA F +VS  GF+GGDP R+AA V +GVGFLGAG I H    V+G          LTTAA+IW  AG+G++AG G+Y  +V  TAI +V+L +  I    NKK
Sbjct:   23 VQREWSGKPAGIRTLPLISMGAALFAIVSGIGFTGGDPARIAAGVVTGVGFLGAGAILHRHGGVEG----------LTTAASIWGVAGIGLAAGTGLYLISVVATAIALVILFIPHISPPKNKK 136          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.420e-28
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSG-GDPGRVAANVASGVGFLGAGTITHPKK-----------RVQGSS----------EVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372
            +RR+S RPAG+RTM+LV+LGA TFTLVS  GF G  D  RVAA+VASGVGF+GAG IT   K           R +G S          +VD +V+GLTTA+AIWI AGLGM+ GAG+ F A+ G  +T+ +L++ ++  +  KK
Sbjct:   49 ERRTSHRPAGVRTMSLVALGACTFTLVSQLGFVGKADQARVAASVASGVGFIGAGVITTSGKEASSMRESLNTRGRGGSNFPGTTVSMNDVDGEVKGLTTASAIWITAGLGMACGAGLLFIAMLGAGLTVGILKISEVTTSVQKK 193          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S1CXC0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXC0_CYCTE)

HSP 1 Score: 107 bits (268), Expect = 1.120e-26
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG-DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDI 351
            +R S+   AG+RTM+LVSLGAATFT+ S YGF G  D  R+A++VASGVGF+GAG IT   K    S  V   V GLTTAAAIW++A +G+++GAG++  AVC  +IT+ +LRLG I
Sbjct:   54 ERASTNHSAGVRTMSLVSLGAATFTICSMYGFVGRWDTSRMASSVASGVGFIGAGVITTSNKY---SKNV---VHGLTTAAAIWLSAAVGVASGAGLHIIAVCAASITVSILRLGRI 164          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A847FA99_9CHLR (MgtC/SapB family protein n=1 Tax=Dehalococcoidales bacterium TaxID=2026733 RepID=A0A847FA99_9CHLR)

HSP 1 Score: 102 bits (255), Expect = 1.290e-25
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVL 336
            +R  + +PAG+R +AL+SLG+A FT VS  GF+GGDP R+AA + SG+GF+GAG I H   R  G       V+G+TTA +IW+AAG+G++ GAG+Y+ A+  T I + VL
Sbjct:   24 ERWKAGKPAGVRDLALISLGSAIFTAVSLEGFTGGDPSRIAAGIVSGIGFIGAGAILH---RDSGG------VQGITTANSIWLAAGIGLAVGAGLYYIALAATVIALTVL 125          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S2MLU6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.400e-25
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG---------DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIRAAANKK 372
            L+R +S  PAG+RTMALVSLGA  FTL S +GF            DP R+A+NVASGVGF+GAG IT+ +K   G  +  + V GLTTAAAIW+AA +G+++G G+Y  A    A T+ +LR   ++  A  K
Sbjct:   58 LERSTSDHPAGVRTMALVSLGACAFTLCSMFGFLAVAASSSAAKLDPSRMASNVASGVGFIGAGVITNNRKS-SGVYDRQSSVNGLTTAAAIWVAAAVGVASGVGLYVVAATAAASTIAILRFSKLKNTAISK 189          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S3L8G4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8G4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.480e-25
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG----DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLG 345
            +RR + RPAGIRTMALVSLG+  FT+ SA+ F  G    D  R++A + SGVGFLGAG I   +++ + S +V   V GLTTAAAIW++A +G++ G  +YF A  GTA+ +V+LR G
Sbjct:  109 ERRQADRPAGIRTMALVSLGSCLFTINSAFAFLDGPMGWDASRISAAIPSGVGFLGAGLIFKQQEKDEESGDVQHVVHGLTTAAAIWLSAAVGVACGGSLYFAATFGTAVMLVLLRFG 226          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A3D3WSL7_9CHLR (Magnesium transporter MgtC n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A3D3WSL7_9CHLR)

HSP 1 Score: 102 bits (254), Expect = 2.480e-25
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRL 342
            +RRS+++PAG+RT++LV++GAA FT+VSA+GF   D  RVAA + +GVGFLGAGTI                + GLTTAA IW  A +GM+ G+GMY  +  GT + +V+L L
Sbjct:   29 ERRSAEKPAGLRTLSLVAVGAALFTVVSAFGFDTADQSRVAAQIVTGVGFLGAGTILRS----------GVTISGLTTAATIWATAAIGMAVGSGMYIASTAGTVLVLVILYL 131          
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Match: A0A7S2RQ06_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQ06_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.620e-25
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    4 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG----DPGRVAANVASGVGFLGAGTITHPKKRVQGSSEVDAD--VRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLG 345
            +RR + RPAGIRTMALVSLG+A FT+ SA+ F  G    D  R++A + SGVGFLGAG I   + RV G+   +A   V GLTTAA++W+AA +G++ G G+YF A   TAI +++LR G
Sbjct:   96 ERRQADRPAGIRTMALVSLGSALFTICSAFAFVSGSQFWDASRISAAIPSGVGFLGAGIIYKEEVRVGGTETGNASHVVHGLTTAASLWLAAAVGIACGGGLYFPATFCTAIILILLRFG 215          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YH54_9STRA1.980e-81100.00MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus... [more]
A0A835YXE4_9STRA2.890e-5670.63MgtC family-domain-containing protein n=1 Tax=Trib... [more]
A0A1F8LUY7_9CHLR5.180e-2950.81Magnesium transporter MgtC n=1 Tax=Chloroflexi bac... [more]
D8LBP6_ECTSI2.420e-2849.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CXC0_CYCTE1.120e-2655.56Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A847FA99_9CHLR1.290e-2549.55MgtC/SapB family protein n=1 Tax=Dehalococcoidales... [more]
A0A7S2MLU6_9STRA2.400e-2548.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3L8G4_9STRA2.480e-2550.85Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A3D3WSL7_9CHLR2.480e-2548.67Magnesium transporter MgtC n=3 Tax=Chloroflexi Tax... [more]
A0A7S2RQ06_9STRA5.620e-2551.67Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:221075..222768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172786|e_gw1.96.45.1
DescriptionMgtC family
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1285@1|root,2S8UQ@2759|Eukaryota
Evalue3.96e-29
Seed ortholog2880.D8LBP6
Hectar predicted targeting categorysignal peptide
TranscriptId173108
TrackFilteredModels1
ProteinId172786
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172786gene_13056Tribonema minus UTEX_B_3156 geneContig_96 221075..222768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13056_1exon_13056_1Tribonema minus UTEX_B_3156 exonContig_96 221075..221251 +
exon_13056_2exon_13056_2Tribonema minus UTEX_B_3156 exonContig_96 222550..222768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13056CDS_13056Tribonema minus UTEX_B_3156 CDSContig_96 221075..221251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172786Trimin1|172786|e_gw1.96.45.1Tribonema minus UTEX_B_3156 polypeptideContig_96 221075..222768 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGCGCCGCAGCTCGCAACGACCAGCAGGCATACGCACCATGGCTCT
GGTGTCGCTGGGGGCAGCGACGTTCACGCTTGTCAGCGCGTATGGATTTT
CAGGGGGAGATCCAGGGCGTGTTGCGGCCAATGTGGCCAGCGGAGTGGGC
TTTCTGGGCGCTGGAACCATCACACATCCGAAAAAGCGCGTTCAAGGCAG
CTCGGAAGTGGATGCTGATGTGAGGGGGCTGACGACGGCGGCAGCCATAT
GGATTGCGGCGGGCCTGGGGATGTCTGCGGGGGCGGGCATGTACTTTACG
GCCGTTTGCGGAACTGCGATTACCATGGTTGTGCTTCGCCTGGGCGACAT
CCGGGCGGCTGCCAACAAGAAGGTCAGTGTGCTGAGCTATGGCTGA
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protein sequence of jgi.p|Trimin1|172786

>Trimin1|172786|e_gw1.96.45.1 ID=Trimin1|172786|e_gw1.96.45.1|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
LQRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVG
FLGAGTITHPKKRVQGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFT
AVCGTAITMVVLRLGDIRAAANKKVSVLSYG*
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mRNA from alignment at Contig_96:221075..222768+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1694bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )
CTGCAGCGCCGCAGCTCGCAACGACCAGCAGGCATACGCACCATGGCTCT GGTGTCGCTGGGGGCAGCGACGTTCACGCTTGTCAGCGCGTATGGATTTT CAGGGGGAGATCCAGGGCGTGTTGCGGCCAATGTGGCCAGCGGAGTGGGC TTTCTGGGCGCTGGAACCATCACACATGTGAGTGGAGCCTACATGTGGCA CATTCAAGTCACTTGTACTTGCTGCTAGATGTATTGAAATTGGAGGAGGG AATGCCGTGTCTGTCTCTCCTAGCTTGCTGGAGCCATCACACTTGTGAGT GGAACCTTCATGTGGCTTATTCACAAAACCTTTACTTGCTGCTGAATGTA TTGCAATTGGAGGAGAAAATGGCGACTCTTGAAGCTTGCAAACTTCAAGC TTCACTTCAAGACCCGACCGCACTCATCCGTTGCACCTCATCCGTCCGCC TCGCGCAACTGAAGAAACGCGTATCAGGCAGCTCGGAGGCGAATGCGGAT GTGAGGGGGCTCACCATACGCCGCTGTCCTGACCGAGTCCACGAAAATTA AGTGCCACTTGTCCAGTTCGATCCAGTAGAAAACTGCATCTTCGACATTA TACCCCCTTAACCTTCCGCCTCGCGCAGCCAAAGAAGCGCGTTCCAGGCA GCTCGGAGGTGGATCTGTACGTGAGGAAGCACCACACGCCGCTGTCCTGA TCGAGTCCACGAAAACCAATGTCTCTTATGTAGTTCATCCCAGTAGAAAA CTTCAACAATTTCATCTTCAACATGAGACCCCTTTCACTCCCTCGCTGCA CTTCAACCGTCCGCCCTGCGCAGCCGAAAAAACGCGTGCAAGGCAGCACG GAGGTGGGTGCTGATGTGAGGAGGGCCACCTCGGCGGCGGCCATATGGAA ACAAACTTTAAGTTCATCTTCATCTTCATATGAGCCCCCACCCGCCACCT CACTCACTTGTTGCACCTCAATTTTCTGTCTCGCGCAGCCACAAACGCGC GTCCAAGGCAGCTTGGAGGTGGATGCGGATGTGAGGGGGCTCACGACGGC AGCTGCCATATATATGGATAGCGGTGGGGCTGGAAAAGTTCATGTTCATC TTCAACATCAGACCCCCCACACCGTCCCCCTCACTCATTCGCTGCACCTC ACATCGCCCATCTCACGCAGCCGAAAAAGCGCGTTCAGGGCAGCTCGGAA GTGGATTTTGATGTGAGGGGGCTGACAATGGCGGCGGCCATATGGATCGC GGCGGGCCTGGGAAATTTCTTGTCCATCTTCAACATCATACCGCCTCACT CGCTCGCCCTCAATCGTCCGCTTCGCTTTGCGCGCCTCGTGCAGCCAAAA AAGCGTGTCCAAGGCAGCTCGGAGGTGGATGCGGATGTGAGGGGGCTGAC AAACTTCAACACTTCCATCTTCAATATCAGACCCCCCTCACTCACTCGTT GCACCTCCATTTTCGTCTCGCGCAGCCGAAAAAGCGCGTTCAAGGCAGCT CGGAAGTGGATGCTGATGTGAGGGGGCTGACGACGGCGGCAGCCATATGG ATTGCGGCGGGCCTGGGGATGTCTGCGGGGGCGGGCATGTACTTTACGGC CGTTTGCGGAACTGCGATTACCATGGTTGTGCTTCGCCTGGGCGACATCC GGGCGGCTGCCAACAAGAAGGTCAGTGTGCTGAGCTATGGCTGA
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Coding sequence (CDS) from alignment at Contig_96:221075..222768+

>mRNA_13056 ID=mRNA_13056|Name=jgi.p|Trimin1|172786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_96:221075..222768+ (Tribonema minus UTEX_B_3156 )
CTGCAGCGCCGCAGCTCGCAACGACCAGCAGGCATACGCACCATGGCTCT
GGTGTCGCTGGGGGCAGCGACGTTCACGCTTGTCAGCGCGTATGGATTTT
CAGGGGGAGATCCAGGGCGTGTTGCGGCCAATGTGGCCAGCGGAGTGGGC
TTTCTGGGCGCTGGAACCATCACACATCCGAAAAAGCGCGTTCAAGGCAG
CTCGGAAGTGGATGCTGATGTGAGGGGGCTGACGACGGCGGCAGCCATAT
GGATTGCGGCGGGCCTGGGGATGTCTGCGGGGGCGGGCATGTACTTTACG
GCCGTTTGCGGAACTGCGATTACCATGGTTGTGCTTCGCCTGGGCGACAT
CCGGGCGGCTGCCAACAAGAAGGTCAGTGTGCTGAGCTATGGCTGA
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