mRNA_5154 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174690
Unique NamemRNA_5154
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174690 vs. uniprot
Match: A0A835ZHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH1_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.130e-104
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 MIPGWLQIIAASGGRVDILQCLHDSGIAIHATTFRCAAEKGKVAVLAWAHRFCGHSVSEAVEHGAKAGSFATLKWAEAAGVPFTERVLRGAILSEKLNIIKWLHARKCPGWDGDLPAMACKHARKAVTDWLVRNNSSIERSGGAGQS 441
            MIPGWLQIIAASGGRVDILQCLHDSGIAIHATTFRCAAEKGKVAVLAWAHRFCGHSVSEAVEHGAKAGSFATLKWAEAAGVPFTERVLRGAILSEKLNIIKWLHARKCPGWDGDLPAMACKHARKAVTDWLVRNNSSIERSGGAGQS
Sbjct:    1 MIPGWLQIIAASGGRVDILQCLHDSGIAIHATTFRCAAEKGKVAVLAWAHRFCGHSVSEAVEHGAKAGSFATLKWAEAAGVPFTERVLRGAILSEKLNIIKWLHARKCPGWDGDLPAMACKHARKAVTDWLVRNNSSIERSGGAGQS 147
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BLAST of jgi.p|Trimin1|174690 vs. uniprot
Match: A0A835ZCQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.510e-17
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:  187 HGAKAGSFATLKWAEAAGVPFTERVLRGAILSEKLNIIKWLHARKCPGWDGDLPAMACKHARKAVTDWLVRNNSSIERS 423
            + AK G    L W    G    E++LR AI + K+NIIKWLHARKCPGWDG+LPAMA  + R AV  WLVRNNS   R+
Sbjct:  331 NAAKEGRTDVLMWLHETG----EKMLRLAIDTNKINIIKWLHARKCPGWDGNLPAMANAYTRDAVRKWLVRNNSRGRRT 405
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174690 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZHH1_9STRA2.130e-104100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCQ3_9STRA5.510e-1755.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:482033..482476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174690|e_gw1.117.134.1
Hectar predicted targeting categoryother localisation
TranscriptId175012
TrackFilteredModels1
ProteinId174690
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174690gene_5154Tribonema minus UTEX_B_3156 geneContig_117 482033..482476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5154_1exon_5154_1Tribonema minus UTEX_B_3156 exonContig_117 482033..482476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5154CDS_5154Tribonema minus UTEX_B_3156 CDSContig_117 482033..482476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174690Trimin1|174690|e_gw1.117.134.1Tribonema minus UTEX_B_3156 polypeptideContig_117 482033..482476 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Trimin1|174690|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:482033..482476- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCCGGATGGCTGCAGATCATCGCCGCGTCGGGGGGGCGCGTAGA
CATACTGCAGTGTTTACACGACTCCGGCATCGCCATCCATGCAACGACCT
TCAGGTGTGCGGCAGAAAAGGGAAAGGTGGCCGTGCTTGCCTGGGCCCAC
CGCTTTTGCGGTCACAGCGTGAGTGAAGCAGTGGAGCACGGCGCCAAGGC
AGGGAGCTTTGCCACCCTGAAGTGGGCGGAAGCAGCAGGCGTGCCCTTCA
CGGAGAGAGTGCTGCGCGGCGCGATCCTCTCCGAAAAGCTCAACATCATA
AAGTGGCTGCACGCTCGGAAGTGCCCCGGGTGGGACGGCGACCTGCCTGC
CATGGCGTGCAAACATGCGCGCAAAGCGGTCACCGATTGGCTGGTGCGGA
ACAACAGCAGTATCGAGCGCAGCGGCGGGGCAGGGCAGAGTTAA
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protein sequence of jgi.p|Trimin1|174690

>Trimin1|174690|e_gw1.117.134.1 ID=Trimin1|174690|e_gw1.117.134.1|Name=jgi.p|Trimin1|174690|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
MIPGWLQIIAASGGRVDILQCLHDSGIAIHATTFRCAAEKGKVAVLAWAH
RFCGHSVSEAVEHGAKAGSFATLKWAEAAGVPFTERVLRGAILSEKLNII
KWLHARKCPGWDGDLPAMACKHARKAVTDWLVRNNSSIERSGGAGQS*
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mRNA from alignment at Contig_117:482033..482476-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Trimin1|174690|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_117:482033..482476- (Tribonema minus UTEX_B_3156 )
ATGATTCCCGGATGGCTGCAGATCATCGCCGCGTCGGGGGGGCGCGTAGA
CATACTGCAGTGTTTACACGACTCCGGCATCGCCATCCATGCAACGACCT
TCAGGTGTGCGGCAGAAAAGGGAAAGGTGGCCGTGCTTGCCTGGGCCCAC
CGCTTTTGCGGTCACAGCGTGAGTGAAGCAGTGGAGCACGGCGCCAAGGC
AGGGAGCTTTGCCACCCTGAAGTGGGCGGAAGCAGCAGGCGTGCCCTTCA
CGGAGAGAGTGCTGCGCGGCGCGATCCTCTCCGAAAAGCTCAACATCATA
AAGTGGCTGCACGCTCGGAAGTGCCCCGGGTGGGACGGCGACCTGCCTGC
CATGGCGTGCAAACATGCGCGCAAAGCGGTCACCGATTGGCTGGTGCGGA
ACAACAGCAGTATCGAGCGCAGCGGCGGGGCAGGGCAGAGTTAA
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Coding sequence (CDS) from alignment at Contig_117:482033..482476-

>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Trimin1|174690|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_117:482033..482476- (Tribonema minus UTEX_B_3156 )
ATGATTCCCGGATGGCTGCAGATCATCGCCGCGTCGGGGGGGCGCGTAGA
CATACTGCAGTGTTTACACGACTCCGGCATCGCCATCCATGCAACGACCT
TCAGGTGTGCGGCAGAAAAGGGAAAGGTGGCCGTGCTTGCCTGGGCCCAC
CGCTTTTGCGGTCACAGCGTGAGTGAAGCAGTGGAGCACGGCGCCAAGGC
AGGGAGCTTTGCCACCCTGAAGTGGGCGGAAGCAGCAGGCGTGCCCTTCA
CGGAGAGAGTGCTGCGCGGCGCGATCCTCTCCGAAAAGCTCAACATCATA
AAGTGGCTGCACGCTCGGAAGTGCCCCGGGTGGGACGGCGACCTGCCTGC
CATGGCGTGCAAACATGCGCGCAAAGCGGTCACCGATTGGCTGGTGCGGA
ACAACAGCAGTATCGAGCGCAGCGGCGGGGCAGGGCAGAGTTAA
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