mRNA_5053 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|174683
Unique Name	mRNA_5053
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|174683 vs. uniprot
Match: A0A835ZHB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHB7_9STRA)

HSP 1 Score: 478 bits (1231), Expect = 3.550e-166
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1

Query:    1 MRATDATTTAITSSFAIFNIAYASGYIVSESACHSLARAGGLEQLQFIKANVPDLLWSHEVTDAAAAGGNLTTLQWLLENDVPLTTKTAQXXXXXXXXXXXXXXXRAGVYDKKMFSHAGAGGMTNVLQWLHDIPDKNLRRLGKFSTAVTSAAATGQVETLKWLIDHGFKTRNHDITAAAQGGFTECVELIYPHVVVGLCDDAVNAAAGAGNAALVGWLVDHQFPTDRFTCEIVAKMGDVHLLERIRVRGEKLNRSIC 771
            MRATDATTTAITSSFAIFNIAYASGYIVSESACHSLARAGGLEQLQFIKANVPDLLWSHEVTDAAAAGGNLTTLQWLLENDVPLTTKTAQXXXXXXXXXXXXXXXRAGVYDKKMFSHAGAGGMTNVLQWLHDIPDKNLRRLGKFSTAVTSAAATGQVETLKWLIDHGFKTRNHDITAAAQGGFTECVELIYPHVVVGLCDDAVNAAAGAGNAALVGWLVDHQFPTDRFTCEIVAKMGDVHLLERIRVRGEKLNRSIC
Sbjct:    1 MRATDATTTAITSSFAIFNIAYASGYIVSESACHSLARAGGLEQLQFIKANVPDLLWSHEVTDAAAAGGNLTTLQWLLENDVPLTTKTAQXXXXXXXXXXXXXXXRAGVYDKKMFSHAGAGGMTNVLQWLHDIPDKNLRRLGKFSTAVTSAAATGQVETLKWLIDHGFKTRNHDITAAAQGGFTECVELIYPHVVVGLCDDAVNAAAGAGNAALVGWLVDHQFPTDRFTCEIVAKMGDVHLLERIRVRGEKLNRSIC 257

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|174683 vs. uniprot

BLAST of jgi.p|Trimin1|174683 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZHB7_9STRA	3.550e-166	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_117	contig	Contig_117:207307..208443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|174683\|e_gw1.117.40.1
Description	Ankyrin repeats (many copies)
COG category	T
Max annot lvl	121069\|Pythiales
EggNOG OGs	2AMK4@1\|root,2RZCC@2759\|Eukaryota,1MIN2@121069\|Pythiales
Evalue	0.000265
Seed ortholog	115417.EPrPW00000020840
Hectar predicted targeting category	other localisation
TranscriptId	175005
Track	FilteredModels1
ProteinId	174683

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174683	gene_5053	Tribonema minus UTEX_B_3156	gene	Contig_117 207307..208443 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5053_1	exon_5053_1	Tribonema minus UTEX_B_3156	exon	Contig_117 207307..208443 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5053	CDS_5053	Tribonema minus UTEX_B_3156	CDS	Contig_117 207307..208443 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174683	Trimin1\|174683\|e_gw1.117.40.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_117 207307..208443 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_117:207307..208443+
coding sequence from alignment at Contig_117:207307..208443+

spliced messenger RNA

>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Trimin1|174683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1137bp|location=Sequence derived from alignment at Contig_117:207307..208443+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCGACCGATGCGACGACGACAGCCATCACCTCTTCCTTCGCCAT
CTTCAACATCGCCTACGCTTCTGGCTACATCGTCAGCGAGAGCGCCTGCC
ATTCGTTGGCTAGAGCCGGAGGGCTGGAGCAGCTCCAGTTCATCAAGGCC
AACGTGCCCGACCTGCTCTGGAGCCATGAGGTGACGGACGCAGCTGCGGC
GGGGGGCAATTTAACGACTCTGCAGTGGTTGCTCGAAAACGACGTGCCGC
TGACCACTAAAACCGCTCAGGCCGCCGCTAGAGGAGGACACGTGCATGTT
CTCGCCTGGCTACTTCGAGCCGGCGTATACGACAAGAAAATGTTCTCCCA
TGCCGGCGCCGGCGGCATGACGAATGTACTGCAGTGGCTTCACGATATTC
CTGACAAGAACCTCAGGAGGCTAGGAAAATTTTCCACAGCGGTGACCAGC
GCGGCGGCCACGGGGCAGGTCGAGACGTTGAAGTGGCTGATCGACCACGG
CTTCAAGACCCGCAATCACGACATCACGGCAGCCGCTCAGGGCGGGTTTA
CGGAATGTGTCGAGCTCATCTACCCTCACGTCGTCGTCGGCCTGTGCGAT
GACGCAGTCAACGCAGCGGCGGGGGCGGGCAACGCCGCCCTCGTCGGGTG
GCTCGTCGACCACCAGTTCCCCACTGACCGGTTCACATGCGAGATCGTGG
CGAAGATGGGGGACGTGCATCTGCTCGAGCGGATCAGGGTGCGAGGCGAA
AAATTAAACAGGAGCATCTGCAGAGGAGCAGCTGCGGGAGGGCACCTTCA
CGTGCTCCAGTACGCAAAGGACAACGGATACAGAGGTGGCGAGGACGCGT
GCCGCGCAGCAGCTGGCGGGGGGCACTTGGAGGCCCTGAAGCATATTCAT
GCTGACGGTGCCCTGTTGACACAGTTTACATTCACACAGGCGGCGCGCTT
CGGCGACGTCGATGTCCTGGAGTGGCTGTGGCAGCAGGACTGCCCCTGGT
CCGCCAACACGTATGCAGCCGCAGCCGCAGGAGGACACCTGCACGCTCTG
CAGTGGCTGCGGGAACGCGGATGTCAGTGGAACGCACACACCATCACGGA
GGCTGCCGAATACGGTCGCCTAGACATCGTCATGTGA

protein sequence of jgi.p|Trimin1|174683

>Trimin1|174683|e_gw1.117.40.1 ID=Trimin1|174683|e_gw1.117.40.1|Name=jgi.p|Trimin1|174683|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp
MRATDATTTAITSSFAIFNIAYASGYIVSESACHSLARAGGLEQLQFIKA
NVPDLLWSHEVTDAAAAGGNLTTLQWLLENDVPLTTKTAQAAARGGHVHV
LAWLLRAGVYDKKMFSHAGAGGMTNVLQWLHDIPDKNLRRLGKFSTAVTS
AAATGQVETLKWLIDHGFKTRNHDITAAAQGGFTECVELIYPHVVVGLCD
DAVNAAAGAGNAALVGWLVDHQFPTDRFTCEIVAKMGDVHLLERIRVRGE
KLNRSICRGAAAGGHLHVLQYAKDNGYRGGEDACRAAAGGGHLEALKHIH
ADGALLTQFTFTQAARFGDVDVLEWLWQQDCPWSANTYAAAAAGGHLHAL
QWLRERGCQWNAHTITEAAEYGRLDIVM*

mRNA from alignment at Contig_117:207307..208443+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Trimin1|174683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1137bp|location=Sequence derived from alignment at Contig_117:207307..208443+ (Tribonema minus UTEX_B_3156 )
ATGCGAGCGACCGATGCGACGACGACAGCCATCACCTCTTCCTTCGCCAT
CTTCAACATCGCCTACGCTTCTGGCTACATCGTCAGCGAGAGCGCCTGCC
ATTCGTTGGCTAGAGCCGGAGGGCTGGAGCAGCTCCAGTTCATCAAGGCC
AACGTGCCCGACCTGCTCTGGAGCCATGAGGTGACGGACGCAGCTGCGGC
GGGGGGCAATTTAACGACTCTGCAGTGGTTGCTCGAAAACGACGTGCCGC
TGACCACTAAAACCGCTCAGGCCGCCGCTAGAGGAGGACACGTGCATGTT
CTCGCCTGGCTACTTCGAGCCGGCGTATACGACAAGAAAATGTTCTCCCA
TGCCGGCGCCGGCGGCATGACGAATGTACTGCAGTGGCTTCACGATATTC
CTGACAAGAACCTCAGGAGGCTAGGAAAATTTTCCACAGCGGTGACCAGC
GCGGCGGCCACGGGGCAGGTCGAGACGTTGAAGTGGCTGATCGACCACGG
CTTCAAGACCCGCAATCACGACATCACGGCAGCCGCTCAGGGCGGGTTTA
CGGAATGTGTCGAGCTCATCTACCCTCACGTCGTCGTCGGCCTGTGCGAT
GACGCAGTCAACGCAGCGGCGGGGGCGGGCAACGCCGCCCTCGTCGGGTG
GCTCGTCGACCACCAGTTCCCCACTGACCGGTTCACATGCGAGATCGTGG
CGAAGATGGGGGACGTGCATCTGCTCGAGCGGATCAGGGTGCGAGGCGAA
AAATTAAACAGGAGCATCTGCAGAGGAGCAGCTGCGGGAGGGCACCTTCA
CGTGCTCCAGTACGCAAAGGACAACGGATACAGAGGTGGCGAGGACGCGT
GCCGCGCAGCAGCTGGCGGGGGGCACTTGGAGGCCCTGAAGCATATTCAT
GCTGACGGTGCCCTGTTGACACAGTTTACATTCACACAGGCGGCGCGCTT
CGGCGACGTCGATGTCCTGGAGTGGCTGTGGCAGCAGGACTGCCCCTGGT
CCGCCAACACGTATGCAGCCGCAGCCGCAGGAGGACACCTGCACGCTCTG
CAGTGGCTGCGGGAACGCGGATGTCAGTGGAACGCACACACCATCACGGA
GGCTGCCGAATACGGTCGCCTAGACATCGTCATGTGA

Coding sequence (CDS) from alignment at Contig_117:207307..208443+

>mRNA_5053 ID=mRNA_5053|Name=jgi.p|Trimin1|174683|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1137bp|location=Sequence derived from alignment at Contig_117:207307..208443+ (Tribonema minus UTEX_B_3156 )
ATGCGAGCGACCGATGCGACGACGACAGCCATCACCTCTTCCTTCGCCAT
CTTCAACATCGCCTACGCTTCTGGCTACATCGTCAGCGAGAGCGCCTGCC
ATTCGTTGGCTAGAGCCGGAGGGCTGGAGCAGCTCCAGTTCATCAAGGCC
AACGTGCCCGACCTGCTCTGGAGCCATGAGGTGACGGACGCAGCTGCGGC
GGGGGGCAATTTAACGACTCTGCAGTGGTTGCTCGAAAACGACGTGCCGC
TGACCACTAAAACCGCTCAGGCCGCCGCTAGAGGAGGACACGTGCATGTT
CTCGCCTGGCTACTTCGAGCCGGCGTATACGACAAGAAAATGTTCTCCCA
TGCCGGCGCCGGCGGCATGACGAATGTACTGCAGTGGCTTCACGATATTC
CTGACAAGAACCTCAGGAGGCTAGGAAAATTTTCCACAGCGGTGACCAGC
GCGGCGGCCACGGGGCAGGTCGAGACGTTGAAGTGGCTGATCGACCACGG
CTTCAAGACCCGCAATCACGACATCACGGCAGCCGCTCAGGGCGGGTTTA
CGGAATGTGTCGAGCTCATCTACCCTCACGTCGTCGTCGGCCTGTGCGAT
GACGCAGTCAACGCAGCGGCGGGGGCGGGCAACGCCGCCCTCGTCGGGTG
GCTCGTCGACCACCAGTTCCCCACTGACCGGTTCACATGCGAGATCGTGG
CGAAGATGGGGGACGTGCATCTGCTCGAGCGGATCAGGGTGCGAGGCGAA
AAATTAAACAGGAGCATCTGCAGAGGAGCAGCTGCGGGAGGGCACCTTCA
CGTGCTCCAGTACGCAAAGGACAACGGATACAGAGGTGGCGAGGACGCGT
GCCGCGCAGCAGCTGGCGGGGGGCACTTGGAGGCCCTGAAGCATATTCAT
GCTGACGGTGCCCTGTTGACACAGTTTACATTCACACAGGCGGCGCGCTT
CGGCGACGTCGATGTCCTGGAGTGGCTGTGGCAGCAGGACTGCCCCTGGT
CCGCCAACACGTATGCAGCCGCAGCCGCAGGAGGACACCTGCACGCTCTG
CAGTGGCTGCGGGAACGCGGATGTCAGTGGAACGCACACACCATCACGGA
GGCTGCCGAATACGGTCGCCTAGACATCGTCATGTGA