mRNA_14638 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172711
Unique NamemRNA_14638
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A835YGW4_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGW4_9STRA)

HSP 1 Score: 381 bits (978), Expect = 1.380e-133
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 MPIRVTWARARAQGACTAHSCSQIPLPPVHSAHACSTPHILVPLSHPPSPLSPLSSCLSPFPCHLFPPPSPVPSLPFLSSPPRRPPFSPSLPPPPFTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAGTGGLVVP 588
            MPIRVTWARARAQGACTAHSCSQIPLPPVHSAHACSTPHILVPLSHPPSPLSPLSSCLSPFPCHLFPPPSPVPSLPFLSSPPRRPPFSPSLPPPPFTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAGTGGLVVP
Sbjct:    1 MPIRVTWARARAQGACTAHSCSQIPLPPVHSAHACSTPHILVPLSHPPSPLSPLSSCLSPFPCHLFPPPSPVPSLPFLSSPPRRPPFSPSLPPPPFTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAGTGGLVVP 196
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A835YRE5_9STRA (Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE5_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.070e-47
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAG 567
            F +QGTLPCVSAQGA ILAGGARVATAPDGNGGVYTALA SGALRAMA RGVRYVHAFS+DNALARPGDAAFVGACVGAGAQCGAQC+WKRDAG
Sbjct:  210 FFSQGTLPCVSAQGAMILAGGARVATAPDGNGGVYTALAFSGALRAMAARGVRYVHAFSVDNALARPGDAAFVGACVGAGAQCGAQCVWKRDAG 303
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A836C6R7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6R7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.990e-30
Identity = 64/91 (70.33%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:  295 QGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAG 567
            +GTLPCVSAQGA +LAGGARVA APDGNGG                RGVRYVHAF++DNALARPGDAAFVGAC  A A CGAQC+WKRDAG
Sbjct:   68 RGTLPCVSAQGAMLLAGGARVAAAPDGNGG----------------RGVRYVHAFTVDNALARPGDAAFVGACSRAWAACGAQCVWKRDAG 142
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A7S2FHR1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2FHR1_9DINO)

HSP 1 Score: 103 bits (256), Expect = 1.590e-24
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRD 561
            F  QGTLPC++++G  I+     VATAPDGNGG+Y AL  SG L+ +   GV+Y+H FS+DNAL RP D  FVG C   GA CG +C+WK  
Sbjct:    9 FFEQGTLPCLTSEGKIIMESAGVVATAPDGNGGLYPALHGSGCLQRLQTEGVKYLHVFSVDNALCRPADPRFVGYCTSRGADCGNKCVWKAS 100
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A7S4UPE1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UPE1_9DINO)

HSP 1 Score: 103 bits (257), Expect = 2.080e-22
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRD 561
            F AQGTLPC++ +G  I+     VATAPDGNGG+Y AL  SG +  M   GV+Y+H FS+DNAL RP D  FVG C+   A CG +C+WK  
Sbjct:  194 FFAQGTLPCMTTEGKLIMESAGMVATAPDGNGGLYPALQGSGCMARMQAAGVKYLHVFSVDNALCRPADPRFVGYCISKDADCGNKCVWKAS 285
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A7S0VSA0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSA0_9CRYP)

HSP 1 Score: 100 bits (248), Expect = 3.810e-21
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDA 564
            F  QGTLPC+S  G  ++ G   VATAPDGNGG+Y ALA SG+L  M +RGV+YVHA S+DNAL  P D  F+G C+ AGA CGA+   K  A
Sbjct:  239 FFQQGTLPCLSTGGDVLMEGKGTVATAPDGNGGIYRALAESGSLEDMRKRGVKYVHASSVDNALVLPCDPLFLGCCIEAGADCGAKVCPKASA 331
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A7S0UEU0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UEU0_HEMAN)

HSP 1 Score: 97.1 bits (240), Expect = 9.780e-21
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDA 564
            F  QGTLPC+S  G  ++    +VATAPDGNGG+Y ALA SG L  M +RGV+YVHA S+DNAL  P D  F+G CV +GA CGA+   K  A
Sbjct:   50 FFEQGTLPCLSMGGDVLMEAQGKVATAPDGNGGIYRALAESGCLADMKKRGVKYVHASSVDNALVLPCDPLFLGCCVESGADCGAKVCPKASA 142
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A3F2RM09_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM09_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.500e-20
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWK 555
            F  QGTLPC + +G  +L  G ++ATAPDGNGG+Y ALA+SGAL  +  RGV+Y+H FS+DNAL +  D  F+G C+   A CG + +WK
Sbjct:  217 FFPQGTLPCFTTEGKLMLESGHKLATAPDGNGGIYKALASSGALDQLQTRGVKYLHVFSVDNALCKAADPTFIGYCIDKQADCGNKVVWK 306
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BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: B8LBN3_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBN3_THAPS)

HSP 1 Score: 96.3 bits (238), Expect = 4.330e-20
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRD 561
            F  QGTLP V+ +G  IL     +A APDGNGG+Y A+   G L++M +RG++Y+HAF +DNAL +P D  FVG C+   A CG + +WK  
Sbjct:   96 FFPQGTLPAVTPEGKMILETATSLAVAPDGNGGIYPAMVKHGVLKSMVERGIKYIHAFGVDNALVKPADPTFVGYCISQNADCGNKVLWKSS 187
[Close]
BLAST of jgi.p|Trimin1|172711 vs. uniprot
Match: A0A1Z5KQN2_FISSO (UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQN2_FISSO)

HSP 1 Score: 97.1 bits (240), Expect = 4.370e-20
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  286 FTAQGTLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYVHAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDA 564
            F +QG LPC+   G  I+     VA APDGNGG+Y ++ +SGAL  M +RGV+Y+H FSIDNAL +P D  F+G C+  G+ CG +  WK DA
Sbjct:  185 FFSQGMLPCMKDDGKIIMETAGEVAMAPDGNGGIYPSMVSSGALADMEKRGVKYLHVFSIDNALIKPADPVFMGYCINQGSDCGNKVCWKVDA 277
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGW4_9STRA1.380e-133100.00Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A835YRE5_9STRA8.070e-4792.55Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=... [more]
A0A836C6R7_9STRA2.990e-3070.33Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S2FHR1_9DINO1.590e-2453.26Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4UPE1_9DINO2.080e-2253.26Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S0VSA0_9CRYP3.810e-2156.99Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0UEU0_HEMAN9.780e-2155.91Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A3F2RM09_9STRA1.500e-2052.22Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
B8LBN3_THAPS4.330e-2047.83Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A1Z5KQN2_FISSO4.370e-2050.54UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_95contigContig_95:134863..135453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172711|e_gw1.95.22.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002
KEGG ReactionR00416
KEGG ModuleM00361,M00362
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
KEGG koko:K00972
EC2.7.7.23,2.7.7.83
DescriptionUTP--glucose-1-phosphate uridylyltransferase
COG categoryM
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG4284@1|root,KOG2388@2759|Eukaryota,2XA55@2836|Bacillariophyta
Evalue3.56e-24
Seed ortholog2850.Phatr54703
Hectar predicted targeting categoryother localisation
TranscriptId173033
TrackFilteredModels1
ProteinId172711
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172711gene_14638Tribonema minus UTEX_B_3156 geneContig_95 134863..135453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14638_1exon_14638_1Tribonema minus UTEX_B_3156 exonContig_95 134863..135453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14638CDS_14638Tribonema minus UTEX_B_3156 CDSContig_95 134863..135453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172711Trimin1|172711|e_gw1.95.22.1Tribonema minus UTEX_B_3156 polypeptideContig_95 134863..135453 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14638 ID=mRNA_14638|Name=jgi.p|Trimin1|172711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_95:134863..135453- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATTCGCGTTACGTGGGCGCGTGCGCGCGCGCAGGGGGCATGCAC
AGCACACTCTTGCAGCCAAATCCCTCTGCCACCTGTGCACAGCGCGCACG
CATGCAGCACGCCGCATATACTCGTCCCCCTCTCTCATCCACCCTCTCCC
CTCTCACCTCTTTCCTCCTGCCTTTCCCCTTTCCCCTGCCACCTCTTCCC
TCCTCCCTCCCCCGTCCCCTCCCTTCCTTTCCTCTCCTCTCCTCCCCGCC
GCCCCCCCTTCTCCCCCTCCCTCCCCCCCCCCCCCTTCACCGCACAGGGC
ACCCTCCCCTGCGTCAGCGCTCAGGGCGCTACGATCCTGGCCGGCGGCGC
ACGCGTCGCAACGGCGCCCGACGGCAACGGCGGCGTCTACACGGCGCTGG
CCGCCAGTGGGGCGCTGCGTGCGATGGCACAGCGCGGCGTGCGCTACGTG
CACGCCTTCAGCATCGACAACGCGCTGGCGCGCCCTGGGGACGCGGCGTT
CGTGGGCGCGTGCGTGGGGGCGGGGGCACAGTGCGGCGCGCAGTGTATCT
GGAAGCGCGACGCAGGTACGGGGGGTTTGGTGGTGCCGTGA
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protein sequence of jgi.p|Trimin1|172711

>Trimin1|172711|e_gw1.95.22.1 ID=Trimin1|172711|e_gw1.95.22.1|Name=jgi.p|Trimin1|172711|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=197bp
MPIRVTWARARAQGACTAHSCSQIPLPPVHSAHACSTPHILVPLSHPPSP
LSPLSSCLSPFPCHLFPPPSPVPSLPFLSSPPRRPPFSPSLPPPPFTAQG
TLPCVSAQGATILAGGARVATAPDGNGGVYTALAASGALRAMAQRGVRYV
HAFSIDNALARPGDAAFVGACVGAGAQCGAQCIWKRDAGTGGLVVP*
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mRNA from alignment at Contig_95:134863..135453-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14638 ID=mRNA_14638|Name=jgi.p|Trimin1|172711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_95:134863..135453- (Tribonema minus UTEX_B_3156 )
ATGCCGATTCGCGTTACGTGGGCGCGTGCGCGCGCGCAGGGGGCATGCAC
AGCACACTCTTGCAGCCAAATCCCTCTGCCACCTGTGCACAGCGCGCACG
CATGCAGCACGCCGCATATACTCGTCCCCCTCTCTCATCCACCCTCTCCC
CTCTCACCTCTTTCCTCCTGCCTTTCCCCTTTCCCCTGCCACCTCTTCCC
TCCTCCCTCCCCCGTCCCCTCCCTTCCTTTCCTCTCCTCTCCTCCCCGCC
GCCCCCCCTTCTCCCCCTCCCTCCCCCCCCCCCCCTTCACCGCACAGGGC
ACCCTCCCCTGCGTCAGCGCTCAGGGCGCTACGATCCTGGCCGGCGGCGC
ACGCGTCGCAACGGCGCCCGACGGCAACGGCGGCGTCTACACGGCGCTGG
CCGCCAGTGGGGCGCTGCGTGCGATGGCACAGCGCGGCGTGCGCTACGTG
CACGCCTTCAGCATCGACAACGCGCTGGCGCGCCCTGGGGACGCGGCGTT
CGTGGGCGCGTGCGTGGGGGCGGGGGCACAGTGCGGCGCGCAGTGTATCT
GGAAGCGCGACGCAGGTACGGGGGGTTTGGTGGTGCCGTGA
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Coding sequence (CDS) from alignment at Contig_95:134863..135453-

>mRNA_14638 ID=mRNA_14638|Name=jgi.p|Trimin1|172711|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=591bp|location=Sequence derived from alignment at Contig_95:134863..135453- (Tribonema minus UTEX_B_3156 )
ATGCCGATTCGCGTTACGTGGGCGCGTGCGCGCGCGCAGGGGGCATGCAC
AGCACACTCTTGCAGCCAAATCCCTCTGCCACCTGTGCACAGCGCGCACG
CATGCAGCACGCCGCATATACTCGTCCCCCTCTCTCATCCACCCTCTCCC
CTCTCACCTCTTTCCTCCTGCCTTTCCCCTTTCCCCTGCCACCTCTTCCC
TCCTCCCTCCCCCGTCCCCTCCCTTCCTTTCCTCTCCTCTCCTCCCCGCC
GCCCCCCCTTCTCCCCCTCCCTCCCCCCCCCCCCCTTCACCGCACAGGGC
ACCCTCCCCTGCGTCAGCGCTCAGGGCGCTACGATCCTGGCCGGCGGCGC
ACGCGTCGCAACGGCGCCCGACGGCAACGGCGGCGTCTACACGGCGCTGG
CCGCCAGTGGGGCGCTGCGTGCGATGGCACAGCGCGGCGTGCGCTACGTG
CACGCCTTCAGCATCGACAACGCGCTGGCGCGCCCTGGGGACGCGGCGTT
CGTGGGCGCGTGCGTGGGGGCGGGGGCACAGTGCGGCGCGCAGTGTATCT
GGAAGCGCGACGCAGGTACGGGGGGTTTGGTGGTGCCGTGA
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