mRNA_7950 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351587
Unique NamemRNA_7950
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A836C6T8_9STRA (Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6T8_9STRA)

HSP 1 Score: 595 bits (1533), Expect = 3.930e-213
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 
Query:    1 MEQKTGGXXXXXXXXXDDQDFVPELLPLSGDEAAEGGEANAPLQATAAAAVSSQRDSWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTLATS 909
            MEQKTGGXXXXXXXXXDDQDFVPELLPLSGDEAAEGGEANAPLQATAAAAVSSQRDSWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTLATS
Sbjct:    1 MEQKTGGXXXXXXXXXDDQDFVPELLPLSGDEAAEGGEANAPLQATAAAAVSSQRDSWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTLATS 303
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A6H5KZA6_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA6_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 7.290e-93
Identity = 137/233 (58.80%), Postives = 173/233 (74.25%), Query Frame = 1 
Query:  202 PTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            P+REC++R+  D+R+ MR P+PG+FV  DE   T+VH LV GP DTPYEGGFFYF+L  PD+YPH+P +VRLMTTG GTVRF PNLY NGKVCLSILGTW GP W P  ++SSVLLSIQSL+ ++PYH EPGFE   S+ +DV +YSDCI HETLRVAV  MA D      MP   +++ +DLF++F   YE+VC  N+HRDG  +VDPFG+ RG F+YA+    I+++   L
Sbjct:  133 PSRECIRRVRNDIRSAMRDPIPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPGFEAA-SNPQDVRDYSDCITHETLRVAVCAMADDSSLSNSMPACFQALTRDLFLSFVPRYELVCEQNMHRDGGKLVDPFGENRGTFRYASIARSIKRIASLL 364
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: D7FWD9_ECTSI (Ubiquitin-conjugating enzyme, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD9_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 6.800e-88
Identity = 132/220 (60.00%), Postives = 161/220 (73.18%), Query Frame = 1 
Query:  241 RAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            RA  R P+PG+FV  DE   T+VH LV GP DTPYEGGFFYF+L  PD+YPH+P +VRLMTTG GTVRF PNLY NGKVCLSILGTW GP W P  ++SSVLLSIQSL+ ++PYH EPGFE   S+ +DV +YSDCI HETLRVAV  M  D      MP  L+++ +DLF++F   YE+VC  N+HRDG  MVDPFG+ RG F+YA+    I+++   L
Sbjct:    4 RANRRDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPGFEAA-SNPQDVRDYSDCITHETLRVAVCAMVDDSSLSNSMPACLQALTRDLFLSFVPRYELVCEQNMHRDGGKMVDPFGENRGTFRYASIARSIKRIASLL 222
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A2R5LDT5_9ACAR (Putative ubiquitin-conjugating enzyme e2z (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LDT5_9ACAR)

HSP 1 Score: 261 bits (666), Expect = 7.100e-82
Identity = 128/244 (52.46%), Postives = 160/244 (65.57%), Query Frame = 1 
Query:  169 SWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            SW P   E   P+ +C+ R   D+  +   P PG+ +  DE+N T +H LV GP +TPYEGGFFYF+LQ P +YP  P +VRLMTTG G+VRF PNLY+NGKVCLSILGTW GP W P+ +L+SVL+SIQSL+ DRPYH EPG+EK  S   D   Y++ IRHET+RVAV DM +        PP LR  ++  F  + E+YE V    LH  G AM DPFG+ RG FQY+  L R+R L   L
Sbjct:   28 SWDPYAHEHEIPSPQCLLRTKRDIVDIHAEPPPGVIIVPDEKNITRIHALVTGPFETPYEGGFFYFLLQCPPDYPIQPPRVRLMTTGYGSVRFNPNLYRNGKVCLSILGTWAGPAWSPAQSLASVLISIQSLMNDRPYHNEPGYEKEKSP-GDADRYNEIIRHETIRVAVCDMVESCLTDVFGPPALRETIEKAFPDYFEYYETVVKNKLHLSGLAMCDPFGEHRGVFQYSTLLTRLRTLRDRL 270
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A7I8W272_9ANNE (DgyrCDS11075 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W272_9ANNE)

HSP 1 Score: 258 bits (660), Expect = 1.260e-80
Identity = 124/250 (49.60%), Postives = 165/250 (66.00%), Query Frame = 1 
Query:  169 SWQPKEK---EQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTLATS 909
            SW P      +   PT +C+ R+  D+  + + P PG+F+  D++N T +H L+ GP DTPYEGGFFYF+++ P +YP  P +V+L+TTG G VRF PNLYKNGKVCLSILGTW GP W P+ T+SSVL+SIQSL+ D+PYH EPGFE        V +Y+D IRHET+RVAV DM +D  +    P  L+ V+Q  F  F E+Y+ VC  N+   G AM DPFGD+RG+F Y    +R+  + + L  S
Sbjct:   31 SWDPSNSPDWDNEKPTEQCVARIKRDILYICKEPPPGMFIVPDQENLTKIHALITGPFDTPYEGGFFYFLIRCPSDYPIRPPRVKLITTGGGRVRFNPNLYKNGKVCLSILGTWSGPAWTPAQTISSVLISIQSLMNDKPYHNEPGFETEKGSGH-VEHYNDIIRHETIRVAVCDMLEDSFK---CPDSLKEVMQQSFRDFFEYYDNVCKTNMKLQGHAMNDPFGDRRGKFDYKTLQKRLANINKKLNLS 276
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A1B6KZD3_9HEMI (UBC core domain-containing protein n=3 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6KZD3_9HEMI)

HSP 1 Score: 256 bits (653), Expect = 1.430e-79
Identity = 127/233 (54.51%), Postives = 158/233 (67.81%), Query Frame = 1 
Query:  202 PTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            P  +CM R+  D+ A+   P PGI V  DE + TLVH L+ GP DTPYEGGFFYFIL+ P +YP  P KV+LMTTG   VRF PNLYK GKVCLSILGTW GP W P+ TLSSVL+SIQSLL D+PYH EPGFE+      DV  Y+D I+HETLRVAVV M  D     L+P PLR  + + F+ F + YE +  + +   G  M DPFG+KRG ++YA  L+R++++   L
Sbjct:   56 PPPQCMLRIKRDMMAIYNEPPPGILVVPDEGDLTLVHALITGPFDTPYEGGFFYFILRFPHDYPIKPPKVKLMTTGGAKVRFNPNLYKCGKVCLSILGTWSGPAWSPAQTLSSVLISIQSLLTDKPYHNEPGFERERLS-GDVARYNDIIQHETLRVAVVGMV-DNDFLLLIPEPLRDAMDESFLQFYDFYENLAQSKIKLTGTQMQDPFGEKRGNYEYAMLLQRLKRIYNRL 286
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: R7U692_CAPTE (UBC core domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U692_CAPTE)

HSP 1 Score: 255 bits (652), Expect = 1.890e-79
Identity = 123/230 (53.48%), Postives = 165/230 (71.74%), Query Frame = 1 
Query:  202 PTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYP-HAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQL 888
            PT +C  R+  D+  + + P PG+ +  D ++ TL+H L+ GP DTPYEGG+FYF+++ P +YP HAP +VRLMTTG G VRF PNLY+NGKVCLSILGTW GP W P+ ++SSVL+SIQSLL ++PYH EPG+E+  +   DV  Y+  IRHETLRVAV DM +   +    PP LR V++  F  + ++YE  CT+N+H +  AM+DPFG+KRG F YAA L+RI+ L
Sbjct:   51 PTEQCFLRIKRDIMNIYKDPPPGMCICPDNEDLTLIHALITGPFDTPYEGGYFYFLIRCPPDYPIHAP-RVRLMTTGEGRVRFNPNLYRNGKVCLSILGTWTGPAWSPAGSISSVLISIQSLLNEKPYHNEPGYEQERNS-GDVERYNHIIRHETLRVAVCDMLEGRCK---CPPHLREVMEQAFPDYCDYYETTCTSNMHLNKTAMLDPFGEKRGHFDYAAILKRIQNL 275
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A0L8HM47_OCTBM (UBC core domain-containing protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8HM47_OCTBM)

HSP 1 Score: 254 bits (650), Expect = 2.850e-79
Identity = 120/247 (48.58%), Postives = 171/247 (69.23%), Query Frame = 1 
Query:  169 SWQP---KEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            +W P   K+ ++  PT +C+ R+  D+  +   P PG+ +  D+++ T +H L+ GP DTPYEGGFFYF+++ P +YP  P +V+LMTTG G VRF PNLY++GKVCLSI+GTW GP W P+ +LSS+L+SIQSL+ D+PYH EPGFE+   ++ D   Y+D IRHE+LRVAV DM ++       P  LR V++  F T+ ++YE VC ANL + G  M+DPFGDKRG F Y + L+R+  +++ L
Sbjct:   26 NWDPCHSKDWDKEKPTPQCILRIKRDIMTIYNEPPPGMCIVPDKEDITEIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYRSGKVCLSIIGTWSGPSWSPAQSLSSILISIQSLMNDKPYHNEPGFEQE-RNVGDAKRYNDVIRHESLRVAVCDMLEE---RCTCPQALREVMEKSFPTYYDYYESVCKANLLKQGQTMLDPFGDKRGSFDYQSLLKRLHAIKKKL 268
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: C3YKA5_BRAFL (UBC core domain-containing protein n=2 Tax=Branchiostoma TaxID=7737 RepID=C3YKA5_BRAFL)

HSP 1 Score: 255 bits (651), Expect = 2.940e-79
Identity = 122/246 (49.59%), Postives = 168/246 (68.29%), Query Frame = 1 
Query:  172 WQP---KEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            W P   K+ E+  PT++C+ R+  D+ ++ + P PG+FV  D ++ T +H L+ GP DTPYEGGFF+F+++ P +YP  P +V+LMTT    VRF PNLYKNGKVCLSILGTW GP W P+ +LSSVL+SIQSL+ ++PYH EPGFE+   ++ D   Y++CIRHET+RVAV  M +    H  +P  LR V++  F  F ++Y   C   LH DG+ M DPFG+KRG FQY+  LER+  + R +
Sbjct:   24 WDPCFSKDWEKERPTQQCILRIKRDIMSIYKEPPPGMFVVPDSEDVTKIHALITGPFDTPYEGGFFHFLIRFPPDYPIRPPRVKLMTTDGEQVRFNPNLYKNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMNEKPYHNEPGFEQE-RNVGDAQRYNECIRHETIRVAVCGMTEGRCCH--LPDQLRGVMEKSFPEFYDYYTSTCRDRLHLDGSNMQDPFGEKRGMFQYSQLLERLEVIRRRI 266
[Close]
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Match: A0A812B0C6_SEPPH (UBE2Z n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812B0C6_SEPPH)

HSP 1 Score: 254 bits (648), Expect = 6.060e-79
Identity = 119/246 (48.37%), Postives = 170/246 (69.11%), Query Frame = 1 
Query:  172 WQP---KEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNATLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFGPNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGFEKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDLFITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL 900
            W P   K+ ++  P+ +C+ R+  D+  +   P PG+ +  D+++ T +H L+ GP DTPYEGGFFYF+++ P +YP  P +V+LMTTG G VRF PNLY++GKVCLSI+GTW GP W P+ +LSS+L+SIQSL+ D+PYH EPGFE+   +  D   Y+D I+HETLRVAV DM ++       P  LR V++  F  + E+YE VC ANL + G +M+DPFGDKRG F Y + L+R++ +++ L
Sbjct:   29 WDPCLSKDWDKEKPSHQCILRIKRDIMTIYNEPPPGMCIVPDKEDITEIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYRSGKVCLSIIGTWSGPSWSPAQSLSSILISIQSLMNDKPYHNEPGFEQE-RNAGDAKRYNDVIQHETLRVAVCDMLEE---RCACPEALREVMEKSFPAYYEYYESVCKANLQKQGQSMLDPFGDKRGSFDYQSILKRLQAIKKKL 270
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351587 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C6T8_9STRA3.930e-213100.00Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Tribonem... [more]
A0A6H5KZA6_9PHAE7.290e-9358.80UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FWD9_ECTSI6.800e-8860.00Ubiquitin-conjugating enzyme, putative n=1 Tax=Ect... [more]
A0A2R5LDT5_9ACAR7.100e-8252.46Putative ubiquitin-conjugating enzyme e2z (Fragmen... [more]
A0A7I8W272_9ANNE1.260e-8049.60DgyrCDS11075 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
A0A1B6KZD3_9HEMI1.430e-7954.51UBC core domain-containing protein n=3 Tax=Cicadel... [more]
R7U692_CAPTE1.890e-7953.48UBC core domain-containing protein n=1 Tax=Capitel... [more]
A0A0L8HM47_OCTBM2.850e-7948.58UBC core domain-containing protein n=3 Tax=Octopus... [more]
C3YKA5_BRAFL2.940e-7949.59UBC core domain-containing protein n=2 Tax=Branchi... [more]
A0A812B0C6_SEPPH6.060e-7948.37UBE2Z n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:193429..198377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351587|estExt_Genemark1.C_Ctg_940037
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10585
EC2.3.2.23
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Preferred nameUBE2Z
Descriptionubiquitin-protein transferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5078@1|root,KOG0895@2759|Eukaryota
Evalue3.36e-89
Seed ortholog2880.D7FWD9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-09_004050.1
TranscriptId351909
TrackFilteredModels1
ProteinId351587
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351587gene_7950Tribonema minus UTEX_B_3156 geneContig_94 193429..198377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351587Trimin1|351587|estExt_Genemark1.C_Ctg_940037Tribonema minus UTEX_B_3156 polypeptideContig_94 193687..198377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7950_7exon_7950_7Tribonema minus UTEX_B_3156 exonContig_94 193429..193854 -
exon_7950_6exon_7950_6Tribonema minus UTEX_B_3156 exonContig_94 194468..194653 -
exon_7950_5exon_7950_5Tribonema minus UTEX_B_3156 exonContig_94 195520..195573 -
exon_7950_4exon_7950_4Tribonema minus UTEX_B_3156 exonContig_94 196244..196283 -
exon_7950_3exon_7950_3Tribonema minus UTEX_B_3156 exonContig_94 196986..197074 -
exon_7950_2exon_7950_2Tribonema minus UTEX_B_3156 exonContig_94 197437..197678 -
exon_7950_1exon_7950_1Tribonema minus UTEX_B_3156 exonContig_94 198245..198377 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7950UTR3_7950Tribonema minus UTEX_B_3156 three_prime_UTRContig_94 193429..193686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7950CDS_7950Tribonema minus UTEX_B_3156 CDSContig_94 198245..198377 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Trimin1|351587|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1170bp|location=Sequence derived from alignment at Contig_94:193429..198377- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAAAGACAGGCGGTGGTGCAACAGCTGCTGCGGCTGCGGCTGA
CGACCAAGATTTTGTGCCGGAGCTGCTGCCGTTGTCAGGCGATGAAGCAG
CTGAGGGAGGAGAAGCAAACGCCCCCTTGCAAGCAACGGCGGCGGCAGCA
GTGTCATCGCAGCGCGACAGCTGGCAGCCCAAGGAGAAGGAGCAAGGAGC
CCCAACGCGGGAGTGCATGAAGCGCCTCATGACAGATCTCAGGGCCGTCA
TGCGCCTGCCGCTGCCGGGCATATTTGTGGCTCTCGACGAGCAGAACGCC
ACGCTGGTGCATGGGCTGGTGGTGGGACCGGACGATACGCCGTACGAGGG
CGGCTTTTTCTACTTCATACTGCAGGCGCCAGACAACTACCCCCATGCGC
CTCTGAAGGTCCGGCTCATGACCACAGGGGCCGGTACCGTGCGCTTCGGT
CCTAACCTCTACAAGAACGGCAAGGTCTGCCTCTCAATCCTGGGCACCTG
GCAGGGTCCTGGCTGGCTGCCATCGATGACGCTCAGCAGCGTGCTGCTAT
CTATACAGAGCCTCCTGTGCGACCGGCCGTACCACCTCGAGCCCGGCTTT
GAAAAACCGCCCAGCGACATGCGCGATGTGACCAACTACAGCGACTGCAT
CAGGCACGAGACGCTGCGCGTGGCAGTGGTGGACATGGCTCAGGACGGCC
CGCAGCACAGGCTCATGCCGCCGCCGCTTCGCTCTGTTGTGCAGGACCTC
TTCATCACGTTCAAGGAGCACTACGAAATGGTCTGCACGGCCAACTTGCA
CCGCGACGGAGCGGCGATGGTGGACCCCTTCGGTGACAAGCGCGGGCGGT
TTCAGTACGCAGCTACTCTGGAACGCATCAGGCAACTGGAGCGGACGCTG
GCGACAAGTTGAAGTTGAAGTGGCAGCGGAGGCCTTGGGAGCAAGTCGCA
CCGCAGCCCGGCTTAGTGTTAGAGTCAGCGCATTCGGAACCAGAGAGCGA
GAGTGTGAGCCTAGCTAGCCACTTCCATGGCAGTCAGGCGACTCAAAGGC
ATCCGCCTCATCATGTCTGTAGTAGTAGAAGACCATGTACGTATGTTCAC
ACACACACACACAAGTGTGGCAGGCAGCGGCAGGCAGGCAGGCGCAGAAC
GACGGCAGCGCGCAGCGGTA
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protein sequence of jgi.p|Trimin1|351587

>Trimin1|351587|estExt_Genemark1.C_Ctg_940037 ID=Trimin1|351587|estExt_Genemark1.C_Ctg_940037|Name=jgi.p|Trimin1|351587|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp
MEQKTGGGATAAAAAADDQDFVPELLPLSGDEAAEGGEANAPLQATAAAA
VSSQRDSWQPKEKEQGAPTRECMKRLMTDLRAVMRLPLPGIFVALDEQNA
TLVHGLVVGPDDTPYEGGFFYFILQAPDNYPHAPLKVRLMTTGAGTVRFG
PNLYKNGKVCLSILGTWQGPGWLPSMTLSSVLLSIQSLLCDRPYHLEPGF
EKPPSDMRDVTNYSDCIRHETLRVAVVDMAQDGPQHRLMPPPLRSVVQDL
FITFKEHYEMVCTANLHRDGAAMVDPFGDKRGRFQYAATLERIRQLERTL
ATS*
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mRNA from alignment at Contig_94:193429..198377-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Trimin1|351587|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4949bp|location=Sequence derived from alignment at Contig_94:193429..198377- (Tribonema minus UTEX_B_3156 )
ATGGAGCAAAAGACAGGCGGTGGTGCAACAGCTGCTGCGGCTGCGGCTGA
CGACCAAGATTTTGTGCCGGAGCTGCTGCCGTTGTCAGGCGATGAAGCAG
CTGAGGGAGGAGAAGCAAACGCCCCCTTGCAAGGTAAAAACTATGCTGAC
GCTGCCTATACCTCCAGCCTAGCGCAGTGCCCGTCTGCATAGGATGACAA
TTCTTCTGCCGTCTTTAAAGCGTGAAACAATATACTTTCAAAGCCTGCTC
TATTTCAGTGATCCAGCAGCAGCATATAGCACCTTTGAGCCGATGGCAAC
ACACCAGCAAGATCATTGCGGCGGTCCAGGTTGTACGTTATGTCTTAGTT
TGTGTATAGAAGCACATTTGCGGTTCCTTGGGGAGCAGTATTGTGCTCGG
CAACACGACGTCTATCGTGTACAACTGATAGTCGCCCAGAGCGACGCTCG
CAGCGATGTCAGTAATTGGCAGCCACGCTTGTGAGTTGTGAGAATCGTGA
GTGCTTCAGTTCATGATACGAGCAGTATATAATGGCGAGAGTTCTTGCGA
TGCCATCACAGGCAATGCACTACCAGCCATCACTCCACAGAGCACCACGA
CCTCGTGTAGCGGTTCGCGACTCTGTTGCAGCGGCACGAGTCGTTCCCGC
AAAGCCCACTCATCAACGCTGTGCGCTCCCCTCCTACGCCCCGCTGCAGC
AACGGCGGCGGCAGCAGTGTCATCGCAGCGCGACAGCTGGCAGCCCAAGG
AGAAGGAGCAAGGAGCCCCAACGCGGGAGTGCATGAAGCGCCTCATGACA
GATCTCAGGGCCGTCATGCGCCTGCCGCTGCCGGGCATATTTGTGGCTCT
CGACGAGCAGAACGCCACGCTGGTGCATGGGCTGGTGGTGGGACCGGACG
ATACGCCGTACGAGGGCGGCTTTTTCTACTTCATACTGCAGGTGACCGCC
TCCTGTGGTGTTGTTGCTGCCGCGGCTGCTGCAGCCAGCGTCGCCGCCGC
TGCTGTCGCTGCTGCTGCTGCCCTGCAGCTTTCTTGCACCTATGACGTCT
AACAAGACTTACTGAAGTGTCGAGTCGAAGCCCCATCCTGCTGTCCCAGT
ACATCGTGTACCTACAAGTCCTGGGTGACGCAGTGCAGCTTCCATTTCGT
CTCAAAGCATTTGCAGGCGCCTTGACCGCTTGCTTCAACACGTTATATTA
CAGCATGTGTGCATATGTGTCTCTGACGCCGATGCTCCCGCTCATGCGCT
GTGCGCGCACTGCTCATGGCTGTGGCTGCTTGCGCGCGCAACTGCTGCCG
CAGGCGCCAGACAACTACCCCCATGCGCCTCTGAAGGTCCGGCTCATGAC
CACAGGGGCCGGTACCGTGCGCTTCGGTCCTAACCTCTACAAGTGAGTGG
CCGCATCTGAGGGGGGTGGGTGATGATGTCGGTGCTATCATTCAACTTCA
TGTTGTACAGTTCTCACTTAGCAGCTGTATTACTGGGTCCAGTGACACAG
CGGCGACTGCATCAGAACGTGTTACGTGTGAATGTCAGCATTTGTACACC
TGTAGGCTCGCATTGCTGCTCGCTGCTTTGGTTTAGGCCGTGTTGCAATG
TGCCAGCACGTCAGCATTCATCAGTGTCACTGCTTCCCGCGCTTGTAAGG
ACCTTGTATGGGCAAACAAGCTCTGCAGAGTGAGTAGAGTCCATACGTGT
CCTACTGAGTTTTGTCGAGCCATGTCTAGTCGTGAGCGCATTGTTTATGA
CCACCCGACGCCGTGCCTTGTGAGGCAAAGCGAGACATGTAGTGCAGTAG
TCATCAAGTAGCATGTTCCAAATGGATGCCATGCACTCACTGCCGTGCCA
CAAGTGCCTGTGAATAGTATTGCGCTGGTTGCATGCGCCGCTTGTGCGTG
TACGTAGGCTACTAAAGCACTCTACATATGGCTTCTAATAACCGCTGCCT
CCTCACCGATACCATCGCTTCTCGCTGCCATGGCACCTTCAACGCATGTC
TGTTGCAGCTGCTGCTCAATGCTACCCCAGGTACCGCCACTACTACAGTC
TGAATGTTCGTTGTCCCGCGCTTGTACTGCTCTGCCATGTGCAGGAACGG
CAAGGTCTGCCTCTCAATCCTGGGCACCTGGCAGGTGAGCACTGCTGTTT
TGATGCCACTGTATGATGTCAATGGTGAGAGCCTGGGCGGAGGGCGGGAG
TGTCACTTCCAGCACTTTGATCAATACTCTCATATTGTTAGCTGACTAGA
GTCCGAGTTTTAGAATTCATGATGACTGGCACTGCACTCAAGTTTTTTTC
GCTCAGGATGACATTGATAGCTGGACGGAGTGTTGTTTCGGAATCAATGA
TGGTGTGCCCGATTTGAAAAATCTTTGCGCTCGATAATTGCTAGCTAATG
AAAGGTTGTTGAGCATCCAGGGCGCCACTGCGCCTCACAGCACGCCGCAT
GTTATTGCTGGACGCATCACCTCTGCATACGTCTATGACAGTCTTACTGC
CAATCACTCCTGGAGAGGGGTAGGAGTAGTGCTAGGGTTGATCTCAATTC
TTATATCCTTCAAACTTGTTCTAGCCAGAATTCGACCCTACCTGAACGGC
GAATCGCTGGTGAAAGCAGTCTCCTGCGATGACGCACACGACTGACTCCT
GTCAGTGATGACCGTTTTTCAAAAAGCGTGCGCTGCGTTATTGATGCTAA
TGCGGTGTTTACAGCTACATGTGAAAGTGTGGTTGTGCCCCCTTGACATT
ACTGCCTTGCACTGATTATGTGCTCTGGTGCAATGGCGACTGACTGTACG
ACAGGGTCCTGGCTGGCTGCCATCGATGACGCTCAGCAGCGTGCTGCTAT
CTATACAGGTCAGCACACTTACTGGTCTCTGCGCAATACAGGTTCTTGTC
ATTCGTTTGTGTGCAGTCGTCTATTGAGTGCATGCTTGCACAAAAACCAA
TGTACTCCCACAAGTGTTCAGAGAGTTTGCCGTTGTCGCATTCAAGCACC
TGACCACTGGACATGCCAGCATTAATGTATTTCTGTACACTTCATTTCTT
AATGTGGTACATGCGAACCGGCCATGTAGTCATTGAACATAGGCGGTGAG
CAGTAGTCTAGAAATTTACGGCACCACGCCCGCATGCACCGACTCTCACG
CTCTCTCTGTGCGTAGCTATTGGCTGTGAGCTATTGTCTGTGAACCGCAA
ATGCAAAACACGCAAGGTGCATGAGTTGAAGTTCATCGTTAGCAAATATG
TTGTGGGTTTGCGCCTACGCGACGCTCCATTCACAGGCATCCTGACGATG
CACGCTGGTCTGTTGCTGCCGAGGGTTCGGGTTCGGGTTAGGGTTAGGGT
TAGGGTTGTGGCACCAGTTTGTGCTGCCGCGTGTAGCTGCAACAACTGAA
GCGCTTTGGGCAATTCGGTAGCACTAATTGCACTCTCCCCATACCGGGAT
GAACTCAGCGCAACTCCGCGGCGACACTTTAGACTCTCTCAAGTGTATCA
CTATCATGATTGGCAAACAGACCAGGCCGCCACTTTTTCTTCTGGATGTG
TTAATTAATGCATGCTTTGCCAGCGTGCGGCTCGCGCGTCAATGCCAGAA
AGCACATCATGCCAAACACTACTGCGGCGCGGCTGTTCACGCGCTGATGA
TGTGCCATCCCCTGTCCTTGTGCTGCGCGCCTCTACTAACACTACGCGCA
TGGCTTTTTGTTTTTGACGTGCAGAGCCTCCTGTGCGACCGGCCGTACCA
CCTCGAGCCCGGCTTTGAAAAACCGCCCAGCGACATGCGCGATGTGACCA
ACTACAGCGACTGCATCAGGCACGAGACGCTGCGCGTGGCAGTGGTGGAC
ATGGCTCAGGACGGCCCGCAGCACAGGCTCATGCCGCCGCCGCTTCGCTC
TGTTGTGCAGGTGACTGATAAAACACTTGTGAATTCATTTCTCCTAACCT
ACATACCTCGAAGTATACTTCAGTATTCTTGTGAGTTGGGCATGTCACAC
TCCACTCAGTTGCAGAAGCAATGAGTGTTCTTCAACTTAAATAGCGGGGC
GTCGCTGTGCTGATGAGCAATCGTAATAGGGTGGGGAGTTTTGGGGCAGT
CGTGCTGCTGACAGCTGCGCCCCCTGTGTGCAGATCAGCATGCATGCGCT
GATTCAAAACATTGCAGGCAGCATATGTACCCACATCATTAACCAATTAT
TCATTGCCTTGTGCTGATGAGAGAAGCGTTGCCTTGCTGTTGTCTGACAC
AAGATGGAGCAACTTGCTGCGCCAAAAGATGGTATGTTGCTGTGCATAAC
GCGCGGCGATACTGCCTGATTATTGCGTTGCTGGCAGCCCCGCTTTGCCA
TGTGTATTACATTTGCGAGGCACTGAGCATACTGCTCTTGGTGTCATGGC
CTGCAAAGTATCTGCCTGCACGTCTCTAGCCTCTGACCCGCACGCTAAAT
AATGCGCACTACCTGTTTTGCCGCTGCACTGCATGCTGACTAATTGCTTT
GCCAAATCACATCGCCTTTGCAGGACCTCTTCATCACGTTCAAGGAGCAC
TACGAAATGGTCTGCACGGCCAACTTGCACCGCGACGGAGCGGCGATGGT
GGACCCCTTCGGTGACAAGCGCGGGCGGTTTCAGTACGCAGCTACTCTGG
AACGCATCAGGCAACTGGAGCGGACGCTGGCGACAAGTTGAAGTTGAAGT
GGCAGCGGAGGCCTTGGGAGCAAGTCGCACCGCAGCCCGGCTTAGTGTTA
GAGTCAGCGCATTCGGAACCAGAGAGCGAGAGTGTGAGCCTAGCTAGCCA
CTTCCATGGCAGTCAGGCGACTCAAAGGCATCCGCCTCATCATGTCTGTA
GTAGTAGAAGACCATGTACGTATGTTCACACACACACACACAAGTGTGGC
AGGCAGCGGCAGGCAGGCAGGCGCAGAACGACGGCAGCGCGCAGCGGTA
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Coding sequence (CDS) from alignment at Contig_94:193429..198377-

>mRNA_7950 ID=mRNA_7950|Name=jgi.p|Trimin1|351587|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_94:193429..198377- (Tribonema minus UTEX_B_3156 )
ATGGAGCAAAAGACAGGCGGTGGTGCAACAGCTGCTGCGGCTGCGGCTGA
CGACCAAGATTTTGTGCCGGAGCTGCTGCCGTTGTCAGGCGATGAAGCAG
CTGAGGGAGGAGAAGCAAACGCCCCCTTGCAAGCAACGGCGGCGGCAGCA
GTGTCATCGCAGCGCGACAGCTGGCAGCCCAAGGAGAAGGAGCAAGGAGC
CCCAACGCGGGAGTGCATGAAGCGCCTCATGACAGATCTCAGGGCCGTCA
TGCGCCTGCCGCTGCCGGGCATATTTGTGGCTCTCGACGAGCAGAACGCC
ACGCTGGTGCATGGGCTGGTGGTGGGACCGGACGATACGCCGTACGAGGG
CGGCTTTTTCTACTTCATACTGCAGGCGCCAGACAACTACCCCCATGCGC
CTCTGAAGGTCCGGCTCATGACCACAGGGGCCGGTACCGTGCGCTTCGGT
CCTAACCTCTACAAGAACGGCAAGGTCTGCCTCTCAATCCTGGGCACCTG
GCAGGGTCCTGGCTGGCTGCCATCGATGACGCTCAGCAGCGTGCTGCTAT
CTATACAGAGCCTCCTGTGCGACCGGCCGTACCACCTCGAGCCCGGCTTT
GAAAAACCGCCCAGCGACATGCGCGATGTGACCAACTACAGCGACTGCAT
CAGGCACGAGACGCTGCGCGTGGCAGTGGTGGACATGGCTCAGGACGGCC
CGCAGCACAGGCTCATGCCGCCGCCGCTTCGCTCTGTTGTGCAGGACCTC
TTCATCACGTTCAAGGAGCACTACGAAATGGTCTGCACGGCCAACTTGCA
CCGCGACGGAGCGGCGATGGTGGACCCCTTCGGTGACAAGCGCGGGCGGT
TTCAGTACGCAGCTACTCTGGAACGCATCAGGCAACTGGAGCGGACGCTG
GCGACAAGTTGA
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