mRNA_7945 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351583
Unique NamemRNA_7945
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351583 vs. uniprot
Match: A0A835YKC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC7_9STRA)

HSP 1 Score: 499 bits (1285), Expect = 3.930e-179
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 
Query:    1 MEYGGSWRHWQSLQPAKFWHAIGARGDISIAEWSMENLCLSAEQPTDSESAGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQGILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVCELDLRAAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIAWLRAEGYGWGSDICYNAAMQGHLEVLKDAGTWRG 702
            MEYGGSWRHWQSLQPAKFWHAIGARGDISIAEWSMENLCLSAEQPTDSESAGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQGILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVCELDLRAAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIAWLRAEGYGWGSDICYNAAMQGHLEVLKDAGTWRG
Sbjct:    1 MEYGGSWRHWQSLQPAKFWHAIGARGDISIAEWSMENLCLSAEQPTDSESAGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQGILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVCELDLRAAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIAWLRAEGYGWGSDICYNAAMQGHLEVLKDAGTWRG 234
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BLAST of jgi.p|Trimin1|351583 vs. uniprot
Match: A0A835YIL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIL7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 6.560e-86
Identity = 137/209 (65.55%), Postives = 157/209 (75.12%), Query Frame = 1 
Query:   55 WHAIGARGDISIAEWSMENLCLSAEQPTDSESAGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQGILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVCELDLRAAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIAWLRAEGYGWGSDICYNAAMQGHLEVLK 681
            W AIGA+GDISIAEW+  NL     QP++S+S    T+       D  + LD  P E  P F+KGAA AGKLA+LDWACT G+L   P C RAVA+GA +GGSLDA+KWLH QLGSSD A RQ T+NR G+CELDLRAA  G LD+L WLKEHGLLM+ Q RE S+ACS AAAGC+DPNVIAWLRAEGYGWGSDICY AA  GH+EVLK
Sbjct:  573 WRAIGAQGDISIAEWAFSNLSRPTSQPSESDSESSITD-------DYGDHLDMRPREAMPHFLKGAAGAGKLAVLDWACTHGVLHLIPRCVRAVAEGATTGGSLDAIKWLHAQLGSSDAALRQVTVNRRGLCELDLRAAQAGRLDVLMWLKEHGLLMEAQRREASKACSKAAAGCDDPNVIAWLRAEGYGWGSDICYAAAKPGHVEVLK 774
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BLAST of jgi.p|Trimin1|351583 vs. uniprot
Match: A0A835YRI5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRI5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.310e-18
Identity = 71/250 (28.40%), Postives = 99/250 (39.60%), Query Frame = 1 
Query:   28 WQSLQPAKF----WHAIGARGDISIAEWSMENLCLSAEQPTDSESAGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQGILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRS-----------------GVCELDLRAAGVGC-----------LDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIAWLRAEGYGWGSDICYNAAMQGHLEVLK 681
            W  L+ +K+    W AIG  G + + EW+++  C              P    P +  D+                 GAAR  +L +L WA  +G L    H    +   A S   L    W  +    + DA   A + +S                 G  E   +    GC           L +L+WL EH  L     R   +AC  AA   ++P+VIAWLR  G+GWGSD+C  AA +GHL VLK
Sbjct:   91 WPPLEVSKWGYVLWPAIGEEGHVPVVEWAIQTYC--------------PNGVAPSHVLDN--------------ITDGAARGRRLPLLQWAFDRGALSQY-HMTNIMLAHATSVRGLPVFLWAWEHKFCNGDARLLARLAQSAARNGCVGVLAHMYARLGGDEFRRKLCHPGCWLHEPAVEGCQLQVLEWLVEHDALPPRNARPRIDACEEAALAADNPDVIAWLREAGFGWGSDVCTRAAERGHLNVLK 311
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BLAST of jgi.p|Trimin1|351583 vs. uniprot
Match: A0A836CMQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 9.910e-5
Identity = 48/153 (31.37%), Postives = 67/153 (43.79%), Query Frame = 1 
Query:  250 AARAGKLAMLDWACTQGILRWTPHCARA------VADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVCELDLR-----AAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDP-NVIAWLRAEGY-GWGSDICYNAAMQGHL 669
            A   G++A+L WA T+GILRW P           V + AV+ G L+ + W+         A  +A + R+   +L +      AA  G L +L+WL+ HG L           C  AAA CN    V+ W  A G       IC  AA   H+
Sbjct:    6 AGAGGRVALLKWAHTRGILRWAPTRDGGNEGIDWVVEEAVASGRLEVLAWMLAAGILQRPAELEAALMRTRGTQLTVFNPACVAAAHGRLRLLQWLRAHGFLWT------RGIC--AAAACNKRIGVLEWALANGCEDQEKSICRVAAEGAHM 150
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351583 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YKC7_9STRA3.930e-179100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIL7_9STRA6.560e-8665.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRI5_9STRA1.310e-1828.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMQ8_9STRA9.910e-531.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:159060..160611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351583|estExt_Genemark1.C_Ctg_940032
Hectar predicted targeting categoryother localisation
TranscriptId351905
TrackFilteredModels1
ProteinId351583
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351583gene_7945Tribonema minus UTEX_B_3156 geneContig_94 159060..160611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7945_1exon_7945_1Tribonema minus UTEX_B_3156 exonContig_94 159060..159548 +
exon_7945_2exon_7945_2Tribonema minus UTEX_B_3156 exonContig_94 160278..160468 +
exon_7945_3exon_7945_3Tribonema minus UTEX_B_3156 exonContig_94 160587..160611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7945CDS_7945Tribonema minus UTEX_B_3156 CDSContig_94 159060..159548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351583Trimin1|351583|estExt_Genemark1.C_Ctg_940032Tribonema minus UTEX_B_3156 polypeptideContig_94 159060..160611 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Trimin1|351583|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_94:159060..160611+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTACGGGGGCAGCTGGCGCCACTGGCAGTCCCTGCAACCTGCGAA
GTTCTGGCACGCCATCGGCGCACGGGGGGACATCTCCATTGCGGAGTGGT
CGATGGAAAATCTCTGCCTCTCCGCTGAGCAGCCTACCGACTCGGAGTCC
GCTGGGCAGCCTACTGAGTTCGAGCCTGAATATTCGTACGACTCAGACGA
GGAGCTGGACTGGACTCCGCATGAGACCACGCCGCCTTTCATGAAGGGGG
CTGCTCGGGCGGGCAAACTGGCCATGCTGGACTGGGCCTGCACACAGGGC
ATCCTCCGCTGGACTCCGCACTGCGCACGCGCAGTTGCGGATGGCGCAGT
CTCCGGCGGCTCGCTAGACGCTGTCAAGTGGCTGCACAAACAGCTGGGCA
GCAGCGACGATGCATTCCGACAGGCGACCATTAACCGGAGCGGCGTGTGC
GAGCTGGACCTGCGTGCAGCTGGAGTGGGGTGCCTAGATATACTGAAGTG
GCTGAAGGAGCACGGCCTTCTGATGGACCCGCAGCACCGTGAAGAGAGTG
AGGCATGCTCAAATGCAGCTGCAGGCTGCAACGACCCCAACGTCATAGCC
TGGCTGCGTGCGGAGGGCTATGGTTGGGGGTCGGACATCTGCTACAACGC
AGCCATGCAGGGCCATCTCGAGGTGCTCAAGGACGCTGGGACGTGGAGGG
GGTAA
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protein sequence of jgi.p|Trimin1|351583

>Trimin1|351583|estExt_Genemark1.C_Ctg_940032 ID=Trimin1|351583|estExt_Genemark1.C_Ctg_940032|Name=jgi.p|Trimin1|351583|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=235bp
MEYGGSWRHWQSLQPAKFWHAIGARGDISIAEWSMENLCLSAEQPTDSES
AGQPTEFEPEYSYDSDEELDWTPHETTPPFMKGAARAGKLAMLDWACTQG
ILRWTPHCARAVADGAVSGGSLDAVKWLHKQLGSSDDAFRQATINRSGVC
ELDLRAAGVGCLDILKWLKEHGLLMDPQHREESEACSNAAAGCNDPNVIA
WLRAEGYGWGSDICYNAAMQGHLEVLKDAGTWRG*
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mRNA from alignment at Contig_94:159060..160611+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Trimin1|351583|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1552bp|location=Sequence derived from alignment at Contig_94:159060..160611+ (Tribonema minus UTEX_B_3156 )
ATGGAGTACGGGGGCAGCTGGCGCCACTGGCAGTCCCTGCAACCTGCGAA
GTTCTGGCACGCCATCGGCGCACGGGGGGACATCTCCATTGCGGAGTGGT
CGATGGAAAATCTCTGCCTCTCCGCTGAGCAGCCTACCGACTCGGAGTCC
GCTGGGCAGCCTACTGAGTTCGAGCCTGAATATTCGTACGACTCAGACGA
GGAGCTGGACTGGACTCCGCATGAGACCACGCCGCCTTTCATGAAGGGGG
CTGCTCGGGCGGGCAAACTGGCCATGCTGGACTGGGCCTGCACACAGGGC
ATCCTCCGCTGGACTCCGCACTGCGCACGCGCAGTTGCGGATGGCGCAGT
CTCCGGCGGCTCGCTAGACGCTGTCAAGTGGCTGCACAAACAGCTGGGCA
GCAGCGACGATGCATTCCGACAGGCGACCATTAACCGGAGCGGCGTGTGC
GAGCTGGACCTGCGTGCAGCTGGAGTGGGGTGCCTAGATGTGAGTAACTC
CAAGTTGCTAGTCGTCCTGCTCATGCGAAGTGTGGTTCATAGCTGCATCA
GACCATTGCATGGGGCGGACTGCTTGTGTGCTCAAAAAAATGCCCCCCCC
CCCCCCCCCCCCCCCCCCCAAACCCCCCCCCCCACCCCCCACTTCATCGA
AGACATCAGCGTATTGTTGAGACCCACCCCGAGGTTCCGGCAGGCGGGTG
CGCCCTCGATACCGAATTGCCTGGCGGCTTTGGTCGTGGACCCCATCCAC
TTGCTATCTTGTGGGGGAAAATAGTCACACTGCATGTCTTCATGATGACA
CCTACACTTTTACTTCTGAATCAGGTGGAAGTGCAATGATTGCTCATTTA
GAGAGGATGTTGCTACAGTAGTTCAAATTTTAAAGAAGATCAGAATTTAG
TAACTGGTAGTATGTCATGATGCCCAAATGCATGTTGCACTTGCATTGCG
TGTACAATTGTGATCATGCGCTGCAGCAGTGCACTATTAAATAAGGCTGA
TTCAAACGTAAGAACAGACTCACGCAAGAGCACTTTTGCTTGACCAATAT
GAGTGGTCTACATCAACACTTGCCGTACTCAATCAATGCGACAGCTGTGC
TTCGCAAAACTCTCAACAATGAGCTGCTTCATCACCTCAGGTCCACACCA
CTTTTGTCATGCTGCAGTGCACCTGGTAAATTAATTGCTCCAATGCATGT
ATTGCTGCTGGCTGGCAGATACTGAAGTGGCTGAAGGAGCACGGCCTTCT
GATGGACCCGCAGCACCGTGAAGAGAGTGAGGCATGCTCAAATGCAGCTG
CAGGCTGCAACGACCCCAACGTCATAGCCTGGCTGCGTGCGGAGGGCTAT
GGTTGGGGGTCGGACATCTGCTACAACGCAGCCATGCAGGGCCATCTCGA
GGTGCTCAAGTGGCTGCAGAGCAACAGCTGCCCAGATTGGGCCAATGTCA
ATGATAAGTTCTGCATTGATATCACATGGCAGAGCTCCTGCATCCCCGCT
CTGGCCTGGCTGAAGTCTATCAGTAAGGGACGCTGGGACGTGGAGGGGGT
AA
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Coding sequence (CDS) from alignment at Contig_94:159060..160611+

>mRNA_7945 ID=mRNA_7945|Name=jgi.p|Trimin1|351583|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=705bp|location=Sequence derived from alignment at Contig_94:159060..160611+ (Tribonema minus UTEX_B_3156 )
ATGGAGTACGGGGGCAGCTGGCGCCACTGGCAGTCCCTGCAACCTGCGAA
GTTCTGGCACGCCATCGGCGCACGGGGGGACATCTCCATTGCGGAGTGGT
CGATGGAAAATCTCTGCCTCTCCGCTGAGCAGCCTACCGACTCGGAGTCC
GCTGGGCAGCCTACTGAGTTCGAGCCTGAATATTCGTACGACTCAGACGA
GGAGCTGGACTGGACTCCGCATGAGACCACGCCGCCTTTCATGAAGGGGG
CTGCTCGGGCGGGCAAACTGGCCATGCTGGACTGGGCCTGCACACAGGGC
ATCCTCCGCTGGACTCCGCACTGCGCACGCGCAGTTGCGGATGGCGCAGT
CTCCGGCGGCTCGCTAGACGCTGTCAAGTGGCTGCACAAACAGCTGGGCA
GCAGCGACGATGCATTCCGACAGGCGACCATTAACCGGAGCGGCGTGTGC
GAGCTGGACCTGCGTGCAGCTGGAGTGGGGTGCCTAGATATACTGAAGTG
GCTGAAGGAGCACGGCCTTCTGATGGACCCGCAGCACCGTGAAGAGAGTG
AGGCATGCTCAAATGCAGCTGCAGGCTGCAACGACCCCAACGTCATAGCC
TGGCTGCGTGCGGAGGGCTATGGTTGGGGGTCGGACATCTGCTACAACGC
AGCCATGCAGGGCCATCTCGAGGTGCTCAAGGACGCTGGGACGTGGAGGG
GGTAA
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