mRNA_7911 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172702
Unique NamemRNA_7911
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA)

HSP 1 Score: 738 bits (1904), Expect = 1.270e-269
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
Query:    1 MYWRCLAGATALWLCLLPHSADGAETRGFTTGTPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQAST 1047
            MYWRCLAGATALWLCLLPHSADGAETRGFTTGTPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQAST
Sbjct:    1 MYWRCLAGATALWLCLLPHSADGAETRGFTTGTPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQAST 349          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA)

HSP 1 Score: 293 bits (749), Expect = 1.860e-94
Identity = 162/333 (48.65%), Postives = 206/333 (61.86%), Query Frame = 1
Query:    7 WR--CLAGATALWLCLLPHSADGAETRGFTTGTPPVIPSHMDGLVVEHVWQF-DPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNF---AGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 987
            WR  CLAGA  L       +A     RGFT   P ++PS    LVVE VWQF  P    +   QI+W+PGT+QVVT HK G +RLY SIDA V+DF+   + ++ VDS+ DHGLLS  FHP+F   AG  G+K  FL+YSGNPKDVTLLPNN  ++  RP  WG+   D P GY W +  C +LG DN +G ICEKVYY+DR     D AT     D+ L   +CG+SSTHG G L+ +  D  F++GDG+QF             + DPGFP ++ACYVPG G DQG F AQR D  NGKV+++P   LD+  PLT  D+  +++G+RQP R
Sbjct:    8 WRLACLAGAALL------GAASAQTIRGFTANKP-IVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGV-GSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPD-PKGYTWGDGPCPDLGKDNMDGLICEKVYYLDRYTY--DPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFV------------VFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 317          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 309 bits (792), Expect = 6.300e-92
Identity = 173/333 (51.95%), Postives = 216/333 (64.86%), Query Frame = 1
Query:   61 ADGAETRGFTTGTPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTD-QVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNL-----GPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFP--NGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVG 1035
            A  AE  GF    PP +PS  + LV+EH+WQF  D+     V++ +VPGTD  VVT HK G +RLY ++DA V+D+  LID+R  V S  DHGLLS  FHP+F    G K AFL Y+G PKDV++LPN+AAI+P RP  WG    +  G Y W  D+C  L     GP++Y G ICE  YY+DRV V+LDA T   T ++TL   VCGS+S+HGPG+L+ INGD   S GDGSQFA              DPGFP+ D CYVP AG DQG FRAQR+D P  NGK+MR+P  LLDS   +T + +E +++GNRQPFRMFY E  D L+I DVG
Sbjct:   17 AAAAEVLGFKAN-PPDVPSQNEDLVIEHLWQFSMDDPP---VKLAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFE--KGVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTG-YTW-GDICPCLDCDGTGPNHY-GNICEHPYYIDRVAVDLDAGT--FTKEVTLLNDVCGSASSHGPGTLIFINGDLVASNGDGSQFAE------------FDPGFPE-DGCYVPDAGADQGCFRAQRMDLPYANGKIMRVPAALLDSAATITLEQVEFISRGNRQPFRMFYHEPADQLWIADVG 325          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.990e-74
Identity = 144/279 (51.61%), Postives = 178/279 (63.80%), Query Frame = 1
Query:  217 VVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPG--GYEWPEDL----CTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVG 1035
            VVT HK G+VRL+ SI A   D   ++D+   V   +DHGLLS +FHP FA  NG + AFL+Y+G PKDV +LPNNA I+P RP  WG+     PG  G+ W +      C  +GP++Y G ICE  YY+DRV V+L+A T  MT ++TL    CGSSS+HGPG++L I GD   S+GDGSQ+A             +DPGF DVD CYVPGAG DQG FRAQR DF NGKV RIP  LL++P  +  +    V  G RQPFRMFY    DTL+IGD G
Sbjct:    2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQFA--NGVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGP---PGKMGFTWNDQCRCLDCDGIGPNHY-GNICEHPYYLDRVAVDLEAGT--MTKEVTLLQVACGSSSSHGPGTVLSIGGDLLVSVGDGSQYAE------------LDPGF-DVDGCYVPGAGDDQGVFRAQREDFGNGKVHRIPAALLNAPAAIALEATSPVAIGLRQPFRMFYHAPGDTLWIGDTG 259          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.140e-68
Identity = 127/299 (42.47%), Postives = 170/299 (56.86%), Query Frame = 1
Query:  103 PVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDL----CTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 987
            P+ P+    L +E +W F+ ++       +++VPG+D V+TV K G++R Y SIDA  D F  ++D+   V S++DHG+ SL FHP++    G  TAF++Y+G PK V  LPN AAI   RP  WG   G    GY+W +      C   G  N NG +CE  YY+DR+N+  D      T DITL    CG+SS+HGPG LL +  D  F +GDGSQF             IID G P+ D C+ P  G  QG  RA R DF NGK+ R+P  L+DSP  L  D + ++ KG RQPFR
Sbjct:    1 PLQPNDDPELKLEQLWTFEYNDKP---TMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDW--DLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNG----GYKWWDQCPCLDCEGTG-QNENGLLCEHPYYIDRINI--DVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFT------------IIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 274          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA)

HSP 1 Score: 233 bits (595), Expect = 7.430e-68
Identity = 146/357 (40.90%), Postives = 197/357 (55.18%), Query Frame = 1
Query:    7 WRCLAGATALWLCLLPHSADGAETRGFTTG--TPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIA--------VDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGS-QTGDLPGGYEWPEDL----CTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDV 1032
            WR  + A  L LC L +SA   + +GF  G    P +    D ++VE +W +D D+L      I++VPG++QV+  HK G +RLY SID+ V+ +  L+D+           V+S  DHGL S  FHP++    G +  FL+YSG PKD+  LPN AAI   RP D+G+   GD   G  W ++     C   G  N +G +CEK YY+DR +++LDA T   T D+TL    CGSS+THGP  L  I  D  +  GD SQ A             +D G  DVDAC+ P     QG +R  R  F  GK+ RIP  LLDS   L F+ +E+V KG RQP+RMF+ +  D L+IGDV
Sbjct:    2 WRA-SPAALLALCCL-YSAQAVQFKGFDAGGSRKPEVRLDDDNVLVELLWTWDEDDLP---TMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWDA--GVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDH--GQTWGDECPCLDCDGTGA-NLDGLVCEKPYYLDRFSIDLDAGTA--TRDVTLLTASCGSSTTHGPTDLKVIGKDLIYGAGDSSQVAT------------LDYGL-DVDACFDPNQSAGQGSYRCVRETFGAGKIGRIPHDLLDSDKELAFEQVELVAKGLRQPWRMFHHKAQDRLYIGDV 333          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.470e-55
Identity = 88/138 (63.77%), Postives = 112/138 (81.16%), Query Frame = 1
Query:  628 MTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQA 1041
            MT D+TLY GVCGSSSTHGPG+L+ +  +  F+MGDG+QFAA+  ++IPAPLN+IDPGFP  D C+VPGAG DQG+FR+QR+DFP+GKV+ IPGKLLDS  P+T D + +V++GNRQPFRM+Y    D L+I DVGQ 
Sbjct:    1 MTKDLTLYVGVCGSSSTHGPGTLINVGANMIFAMGDGAQFAAVDEKYIPAPLNVIDPGFPQTDGCFVPGAGADQGEFRSQRMDFPHGKVLMIPGKLLDSKVPITLDQLVVVSRGNRQPFRMYYHAQKDALWICDVGQG 138          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.980e-52
Identity = 136/396 (34.34%), Postives = 183/396 (46.21%), Query Frame = 1
Query:  106 VIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPG--GYEWPEDLCTNLGPD----NYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAG----------------------------------------------------------------------------LDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQAST 1047
            + P   D L+VEH+W +  D+ A   V I++VPG+DQV++VHK G VRLY ++ +    +  L+D+        DHGLL++ +HP++    G +  F++Y+G PKDV  LPNN A+   RP  WG      PG  G  WP D C  L  D    N +G ICE  YY+DR++V+LDA T     D+TL + +CGSS THGPG L  I  D  +S G+GSQF             + D GF D D CY   +                                                                               QG FRA R  F NGK+ RIP  LLDS + ++ D +E+V KG RQP R+F+ E  D L +G  G A T
Sbjct:   14 LAPVDDDNLLVEHIWTWQYDDRA---VMIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWDA--GVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGP---PGKHGQLWP-DSCPCLDCDGAGKNRDGLICEHPYYIDRISVDLDAGTS--KKDVTLLSVMCGSSDTHGPGDLKIIGKDLIYSTGEGSQFT------------VFDYGFED-DGCYNSDSDSPLFPHPPXXXXXXXXXXXXXXXXXXXXXXXXIPLSTPAXXXXXXXXXXXXWLRPRSXXXXXXXXXXXXXXXXDQTAGQGSFRAIRETFGNGKIGRIPYDLLDSDSEISLDQVELVAKGVRQPVRLFHHEKQDRLDVG-FGDAGT 384          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.760e-36
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  130 LVVEHVWQFDPDNLAEC--VVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPN-GTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPG--GYEWPED--LCTNLGP--DNYNGEICE 573
            LVVE VW+FD   + E   V  + W+PGT++V+   K G + +Y +IDA VD++ ++ D+ + V S  DHGLL   FHPNF  P  GT + F++YSG PKDVTLLPN+AA++  RPA WG      PG  GY W E   LC  L    +NY G++CE
Sbjct:    2 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGP---PGTKGYAWDESGYLCPALEKPLNNYGGKLCE 155          
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.380e-25
Identity = 102/337 (30.27%), Postives = 144/337 (42.73%), Query Frame = 1
Query:   85 FTTGTPPVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSG-----NPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSL-LEINGDFYFSMGDGSQFAAMGSQF-IPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRI-PGKLLDSPT----------------PLTFD-DMEIVTKGNRQPFRMFYRETDDTLF 1020
            FT    PVI +    LVV+  W+F P   A     +++ P +  V+T+HKHG VRLY S+D   +D+  ++++   V S  DHG++   F P + G +  + A+L Y       +    T  PN  A+   RP DWG     L           TN          CEK+  + R+ ++L A T     D  L    CG S+THG G++      +     G+ +Q+A         A            DACY P     QG F AQR DF +GK +RI P    +S +                PL  D D  +  KG R PFR F    DD L+
Sbjct:   55 FTGDNDPVIANKDVNLVVQQHWEFSPQEKATA---LRFSPISAHVITIHKHGEVRLYDSVDVDGEDYKTILNIEDKVYSADDHGMVGFAFDPQY-GVDRNQYAYLFYMSQLGPAHAVSKTTFPN-PAVGATRPLDWGDNNCPLE----------TN----------CEKLSVLTRLLIDLAAKTA--KEDAVLLVDQCGGSATHGVGAINFASTEEMIIMYGEHAQYALFDYNMPADAXXXXXXXXXXAKDACYDPAKLPGQGCFHAQRDDFIHGKGIRIAPDSYRNSTSTLLVSRLRSGGYAVDQPLVKDVDYTVFGKGFRNPFRSFIAP-DDVLW 363          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835YGZ7_9STRA1.270e-269100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCH6_9STRA1.860e-9448.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA6.300e-9251.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK08_9STRA1.990e-7451.61Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZE02_9STRA1.140e-6842.47Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YZK9_9STRA7.430e-6840.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB5_9STRA5.470e-5563.77CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YXY7_9STRA1.980e-5234.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQG5_9STRA1.760e-3646.50Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YYP6_9STRA8.380e-2530.27Plastocyanin-like domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:11645..14364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172702|e_gw1.94.91.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
Descriptionmetallopeptidase activity
COG categoryS
Max annot lvl2|Bacteria
EggNOG OGsCOG2133@1|root,COG3055@1|root,COG3291@1|root,COG2133@2|Bacteria,COG3055@2|Bacteria,COG3291@2|Bacteria
Evalue3.21e-06
Seed ortholog1123320.KB889698_gene9323
Hectar predicted targeting categorysignal peptide
TranscriptId173024
TrackFilteredModels1
ProteinId172702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172702gene_7911Tribonema minus UTEX_B_3156 geneContig_94 11645..14364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172702Trimin1|172702|e_gw1.94.91.1Tribonema minus UTEX_B_3156 polypeptideContig_94 11645..14364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7911_5exon_7911_5Tribonema minus UTEX_B_3156 exonContig_94 11645..11856 -
exon_7911_4exon_7911_4Tribonema minus UTEX_B_3156 exonContig_94 12230..12491 -
exon_7911_3exon_7911_3Tribonema minus UTEX_B_3156 exonContig_94 12887..13273 -
exon_7911_2exon_7911_2Tribonema minus UTEX_B_3156 exonContig_94 13693..13770 -
exon_7911_1exon_7911_1Tribonema minus UTEX_B_3156 exonContig_94 14254..14364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7911CDS_7911Tribonema minus UTEX_B_3156 CDSContig_94 14254..14364 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Trimin1|172702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1050bp|location=Sequence derived from alignment at Contig_94:11645..14364- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTGGAGATGTCTGGCTGGAGCCACGGCTTTGTGGCTTTGTTTGCT
GCCGCATAGTGCGGATGGAGCAGAAACCCGTGGGTTTACGACAGGGACGC
CACCGGTCATCCCGAGCCACATGGATGGACTGGTGGTGGAGCATGTGTGG
CAGTTTGACCCTGACAACCTCGCAGAATGCGTCGTGCAGATACAATGGGT
TCCTGGCACCGACCAAGTCGTGACCGTCCACAAGCACGGCATCGTGCGCC
TCTACCCCAGCATCGACGCCAGCGTCGACGACTTTGTGCAGCTCATTGAC
CTGCGCATCGCAGTCGACTCCGACTCAGACCACGGACTTCTTTCGCTCAA
CTTCCACCCCAACTTTGCGGGCCCCAACGGCACCAAGACGGCTTTCCTCA
TGTACTCCGGTAACCCCAAGGACGTTACGCTCCTGCCCAACAACGCCGCC
ATCTCGCCAAAACGACCTGCCGACTGGGGGTCGCAGACCGGGGACCTGCC
TGGGGGGTACGAGTGGCCGGAGGATCTGTGCACGAACCTGGGGCCTGACA
ACTACAACGGCGAGATCTGTGAAAAGGTGTACTATATGGACCGAGTCAAC
GTCAACCTGGACGCAGCCACCCCCGTCATGACCCCCGACATCACACTCTA
CGCCGGCGTGTGCGGCAGCAGCAGCACGCACGGCCCCGGCTCCCTACTCG
AAATCAACGGCGACTTCTACTTCAGCATGGGAGATGGCTCGCAGTTTGCA
GCTATGGGGTCTCAGTTCATTCCAGCACCGCTCAACATCATCGACCCTGG
GTTTCCTGACGTGGATGCATGCTACGTGCCTGGCGCAGGTCTGGACCAAG
GGCAGTTCCGCGCCCAGCGCCTCGATTTCCCCAATGGCAAGGTCATGCGC
ATTCCCGGCAAGCTTCTAGACTCCCCCACTCCACTGACGTTCGATGACAT
GGAGATAGTGACCAAGGGCAACAGGCAGCCGTTCCGCATGTTCTACCGCG
AGACTGACGACACTCTGTTCATTGGTGACGTGGGACAGGCAAGTACCTGA
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protein sequence of jgi.p|Trimin1|172702

>Trimin1|172702|e_gw1.94.91.1 ID=Trimin1|172702|e_gw1.94.91.1|Name=jgi.p|Trimin1|172702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=350bp
MYWRCLAGATALWLCLLPHSADGAETRGFTTGTPPVIPSHMDGLVVEHVW
QFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLID
LRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAA
ISPKRPADWGSQTGDLPGGYEWPEDLCTNLGPDNYNGEICEKVYYMDRVN
VNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFA
AMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMR
IPGKLLDSPTPLTFDDMEIVTKGNRQPFRMFYRETDDTLFIGDVGQAST*
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mRNA from alignment at Contig_94:11645..14364-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Trimin1|172702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2720bp|location=Sequence derived from alignment at Contig_94:11645..14364- (Tribonema minus UTEX_B_3156 )
ATGTATTGGAGATGTCTGGCTGGAGCCACGGCTTTGTGGCTTTGTTTGCT GCCGCATAGTGCGGATGGAGCAGAAACCCGTGGGTTTACGACAGGGACGC CACCGGTCATCGTAAGTTCGGTGTCGAGAGCCATGTAATGCCCCTCTGTG CTTGCTTGAGTGCATCCTGATCAAGCACAAGGATGTACAGTAAAGCAGAC CGGAAGAACCATGCTTCAGTTACCGTATTCGCAAGGTCAGGTCCAACCTG GCGCCGCTCTTCCTGTGTTGCATCGCGCCTGAAATGTGATAAAGTTGCTG TATCGTCATTGTTTTAGTAGGCCTGCTTGCGGTGATCTAAGTAGAGTACG GCTATGCGGCACACAAATTAATGTAGTTGCTCAAGCGGGTCATTGGTTGA TTCGTGTGCTGCGTCCGATGCATGATACGCTCCCATACCAACATCATCAG CAGTCACTTTACGCCGGAGGTGACCGACTGTCTGCTGGCAACAGCCTACA ACACGGATGCTTTCCTCTGAACTATTTCATCGCATTCATTTTACATGCCT GCCTGGTGCTCTTTTGTTGCCTGTGTTCTTGTTCGTTACCTCAGCCGAGC CACATGGATGGACTGGTGGTGGAGCATGTGTGGCAGTTTGACCCTGACAA CCTCGCAGAATGCGTCGTGCAGGTGAGGGCTACACCAGCTGAGACAGCAA ATTATTAGACATTACTGGTGCTCTTGATGCCTTCTTTGTATGCTAAAGAT GTCTGGGGTGGACACCTGGAACGGTAGTATGCTTGACGCATCTCATGTCT GCGTTTGCAAGTAGGCACTGGCTGGTCTCAGGGATGTGCTGATATGCTTG CATCCGCTGGCAGCATAGGCAGCAACACATGGTCAGTTCATGCTCCGTAA TCGCATGCAACAGGCGTGGTGATGTTCAGACAAGTGATGCTGCCGCTTGT TTTACCACACACGGTGTGAGAGGCTGTGTCGACAGCAAGGCATCTCATTG TGGCATGCATCACACACATGTGAAGAGCAAACTACTGTAGCACTAAGCTA GCTGCTGTCTTACTTTCTCTCTACTTTTTCCATCTGTGCAGATACAATGG GTTCCTGGCACCGACCAAGTCGTGACCGTCCACAAGCACGGCATCGTGCG CCTCTACCCCAGCATCGACGCCAGCGTCGACGACTTTGTGCAGCTCATTG ACCTGCGCATCGCAGTCGACTCCGACTCAGACCACGGACTTCTTTCGCTC AACTTCCACCCCAACTTTGCGGGCCCCAACGGCACCAAGACGGCTTTCCT CATGTACTCCGGTAACCCCAAGGACGTTACGCTCCTGCCCAACAACGCCG CCATCTCGCCAAAACGACCTGCCGACTGGGGGTCGCAGACCGGGGACCTG CCTGGGGGGTACGAGTGGCCGGAGGATCTGTGCACGAACCTGGGGCCTGA CAACTACAACGGCGAGATCTGTGAAAAGGTGAGGTGGCGAGAGTGTGCTA TTATGTGCGCGTGGTGTCGTAAAGCAGGCAAGTTGTGATGCGCAGCGTCA TGCGCATGTGTAGCGTCATAGTGATGCTTGGCCATGGCAGATTGCGCGGC CTTTTCTAGTTCTTATTCATCTGAAGCACAAGTGCTTGGTTTGCACGGTT GTCCTGCATATCAGCACTCAAACTGCACATTGACACACTTTAAGTAGAAG GATCAGAGTGCAACATGGATTCGCTCTCCTGTTGTGTCGTGTGCACTGTC CTTGGACCCACTGTTGTGTTCTTCCTAGCTGTAGTGTTGTATGCACTGTC TCCTGACCCTCTGTTGTGAAGTTTGTCCTAGCCGCTCACATCTCCTCTCT GCCACCATCTCCCTGCACACCAGGTGTACTATATGGACCGAGTCAACGTC AACCTGGACGCAGCCACCCCCGTCATGACCCCCGACATCACACTCTACGC CGGCGTGTGCGGCAGCAGCAGCACGCACGGCCCCGGCTCCCTACTCGAAA TCAACGGCGACTTCTACTTCAGCATGGGAGATGGCTCGCAGTTTGCAGCT ATGGGGTCTCAGTTCATTCCAGCACCGCTCAACATCATCGACCCTGGGTT TCCTGACGTGGATGCATGCTACGTGCCTGGCGCAGGTACGCATGGGCTTT GTTGTGGCTCACCTCACTTTATTTGTTAACTGTGCTTCAAAGTAGCTGCC AAAGAGAGGTGTGAAGGCCATTGCCATTCATGCCTTGAAATTTTTCAATG AAGTATTTTAAGGTAGTCGCGCTACTCAAAACTGCCCGTCCCTCATTGTA GCATCTTGCGTGCATTCAACACTGAAGCAATAGTGCGTACGCTGAAGTAC ATAGCAAATGTGGTGATTGCGCATGTGCCAAACATAACGGCAGACCTCAT CGCACACGTGCATATGCGTATCTTTGATGTTTGTACTTCATTTGCGCTTC ACATGGTCACATAAGAGTACTCACCACTCACCAATCCCCGATGTGTGCGT CATTACAGGTCTGGACCAAGGGCAGTTCCGCGCCCAGCGCCTCGATTTCC CCAATGGCAAGGTCATGCGCATTCCCGGCAAGCTTCTAGACTCCCCCACT CCACTGACGTTCGATGACATGGAGATAGTGACCAAGGGCAACAGGCAGCC GTTCCGCATGTTCTACCGCGAGACTGACGACACTCTGTTCATTGGTGACG TGGGACAGGCAAGTACCTGA
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Coding sequence (CDS) from alignment at Contig_94:11645..14364-

>mRNA_7911 ID=mRNA_7911|Name=jgi.p|Trimin1|172702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1050bp|location=Sequence derived from alignment at Contig_94:11645..14364- (Tribonema minus UTEX_B_3156 )
ATGTATTGGAGATGTCTGGCTGGAGCCACGGCTTTGTGGCTTTGTTTGCT
GCCGCATAGTGCGGATGGAGCAGAAACCCGTGGGTTTACGACAGGGACGC
CACCGGTCATCCCGAGCCACATGGATGGACTGGTGGTGGAGCATGTGTGG
CAGTTTGACCCTGACAACCTCGCAGAATGCGTCGTGCAGATACAATGGGT
TCCTGGCACCGACCAAGTCGTGACCGTCCACAAGCACGGCATCGTGCGCC
TCTACCCCAGCATCGACGCCAGCGTCGACGACTTTGTGCAGCTCATTGAC
CTGCGCATCGCAGTCGACTCCGACTCAGACCACGGACTTCTTTCGCTCAA
CTTCCACCCCAACTTTGCGGGCCCCAACGGCACCAAGACGGCTTTCCTCA
TGTACTCCGGTAACCCCAAGGACGTTACGCTCCTGCCCAACAACGCCGCC
ATCTCGCCAAAACGACCTGCCGACTGGGGGTCGCAGACCGGGGACCTGCC
TGGGGGGTACGAGTGGCCGGAGGATCTGTGCACGAACCTGGGGCCTGACA
ACTACAACGGCGAGATCTGTGAAAAGGTGTACTATATGGACCGAGTCAAC
GTCAACCTGGACGCAGCCACCCCCGTCATGACCCCCGACATCACACTCTA
CGCCGGCGTGTGCGGCAGCAGCAGCACGCACGGCCCCGGCTCCCTACTCG
AAATCAACGGCGACTTCTACTTCAGCATGGGAGATGGCTCGCAGTTTGCA
GCTATGGGGTCTCAGTTCATTCCAGCACCGCTCAACATCATCGACCCTGG
GTTTCCTGACGTGGATGCATGCTACGTGCCTGGCGCAGGTCTGGACCAAG
GGCAGTTCCGCGCCCAGCGCCTCGATTTCCCCAATGGCAAGGTCATGCGC
ATTCCCGGCAAGCTTCTAGACTCCCCCACTCCACTGACGTTCGATGACAT
GGAGATAGTGACCAAGGGCAACAGGCAGCCGTTCCGCATGTTCTACCGCG
AGACTGACGACACTCTGTTCATTGGTGACGTGGGACAGGCAAGTACCTGA
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