mRNA_7928 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172646
Unique NamemRNA_7928
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA)

HSP 1 Score: 483 bits (1243), Expect = 5.050e-172
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1 
Query:    1 MQFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 765
            MQFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP
Sbjct:    1 MQFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 255
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA)

HSP 1 Score: 418 bits (1074), Expect = 3.180e-146
Identity = 222/258 (86.05%), Postives = 239/258 (92.64%), Query Frame = 1 
Query:    1 MQFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAG---GEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 765
            MQFTGKVAIITGASSGIGLAAAQQ+AAEGAKVVLAARG++RL +AV++IKA+      AIGVVMDAS+DEDNKRLVDT LETYG LN+SFINAGVH AKPISEVD SMLD LYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSC GSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIA GA++T+LV APEE F+ +GKMV LMPRAGRPEEIARCVCFLASD+ASFVTGTV+ ADGG+SLKGP
Sbjct:    1 MQFTGKVAIITGASSGIGLAAAQQLAAEGAKVVLAARGKERLDEAVNNIKASRRMLAVAIGVVMDASVDEDNKRLVDTALETYGLLNVSFINAGVHRAKPISEVDASMLDTLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAAGAVFTNLVGAPEEAFEEMGKMVGLMPRAGRPEEIARCVCFLASDEASFVTGTVLTADGGSSLKGP 258
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BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 6.720e-136
Identity = 203/254 (79.92%), Postives = 224/254 (88.19%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 765
            +FT KVAI+TGASSGIGLA AQQMAAEGAKVVLAARGQ++L KAV SIKAAGGEAIGV MDAS+DEDNKRLVD  LETYG++N+SFINAG++     +EV  ++LD+LYD NVKGVAYALKYQL AIEKSGGKGSVVINSSCAG  VTAFP+F+ NGPYASTKAA DILMKYAAIEAIDHGTRVNSIAPG + T L + PE+ FD +GK VHLMPRAGRPEEIARCVCFLASDDASFVTGTV+ ADGG SLKGP
Sbjct:    3 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 256
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835Z2Q8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q8_9STRA)

HSP 1 Score: 325 bits (833), Expect = 1.040e-109
Identity = 173/254 (68.11%), Postives = 204/254 (80.31%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 765
            +FTG VA++TGASSGIGLA AQQMAAEGAKVV+AAR +DRL KA     A GG+AIGVVMDAS+DEDNKRLVD  L+ YG +N+SFINAGVH     +EV G+MLD+LYD NVKGVAYALK+QL AIE+SGG GSVVINSSCAGS VTAFP       +A  +A   +  +  AIEAIDHGTRVNS+APG + T+LV+ P + ++++   VHLMPR+GRPEEIARCVCFLASDDASFVTG V++ADGG SLKGP
Sbjct:    3 RFTGTVAVVTGASSGIGLATAQQMAAEGAKVVMAARTKDRLDKA-----ANGGDAIGVVMDASLDEDNKRLVDEALKAYGQINVSFINAGVHRGSVAAEVTGTMLDELYDTNVKGVAYALKHQLAAIERSGGNGSVVINSSCAGSNVTAFPA----ADHAHPRACARMQHRAQAIEAIDHGTRVNSVAPGVVRTNLVDRPADAYEALAASVHLMPRSGRPEEIARCVCFLASDDASFVTGAVLLADGGFSLKGP 247
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BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA)

HSP 1 Score: 310 bits (794), Expect = 9.760e-104
Identity = 161/250 (64.40%), Postives = 196/250 (78.40%), Query Frame = 1 
Query:   13 GKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKG 762
            GKV ++TG SSGIGLA AQ +A +G  VVLAARGQDRL KAVD IKA+GGEA GV+ DAS DEDNK+LVD  LE Y  L++SFINAG++    ++EV  + +D+L+  NVKGVA+ALKYQLPAIEKSGG GS+VINSS AG  V   P F GNGP++++KA  D+LM++AAIEA  HGTRVNSIAPG ++T      +EV+D +G  + LM RAGRPEEIA CVCFL SD+ASFVTGTVM+ADGG S+KG
Sbjct:    1 GKVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 250
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BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA)

HSP 1 Score: 286 bits (733), Expect = 1.930e-94
Identity = 153/252 (60.71%), Postives = 191/252 (75.79%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLK 759
            +FTG+V ++TG SSGIGLA A+Q+A EG KVVLAARG++RL KAVD IKA+GGEA GVV DAS ++DNKRLVD  L+ Y  L++SFINAG+H A    +V   MLD+L   NVK VA  LKYQLPAI KSGG G++VINSS AGS V     F GNGPYA+TKAA D+LM++AA+EA   GT++NSIAPG + T+L++ P++ ++  GK  ++M R GRPEEIA    FL SDDASFV GTV+ ADGG +LK
Sbjct:    3 RFTGRVCVVTGGSSGIGLATAEQLAREGGKVVLAARGKERLEKAVDGIKASGGEAFGVVADASKEDDNKRLVDAVLDKYHRLDVSFINAGIHRAAKAVDVTDEMLDELLAANVKSVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQINSIAPGVVKTNLLDLPDDAYEEFGKGANVMHRTGRPEEIAH---FLLSDDASFVMGTVLTADGGHALK 251
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 250 bits (639), Expect = 4.410e-80
Identity = 135/254 (53.15%), Postives = 178/254 (70.08%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEA--PEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLK 759
            +F G+VA++TGASSG+GLA A Q+AAEGAKVV+ AR +D+L  A   IKA GG+ + V  D S D  NK +VD  L  YG L+++F+NAG +   P+ +V   + DK++DVNVK VA+ LK+ LPAIEKSGG GSV+INSS      TA P F G G Y+++KAA D++MKYAAIEA  H TRVNSIAPG + T+++     +E +++    V L+ R G PEEIA  VCFLASD+A+F+TG+V   DGG  LK
Sbjct:    5 RFEGRVAVVTGASSGMGLATAAQLAAEGAKVVMVARTKDKLEAAAADIKAKGGDVLAVAADVSKDAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLK 258
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.030e-77
Identity = 135/260 (51.92%), Postives = 173/260 (66.54%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISE-----VDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDS----IGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASL 756
            +F GKVAI+TGAS+GIGLA   Q+  EGAKVVL +R QD+L  AV  IKA  G+   +  D S +  NK +VD  +  YG L+++F NAG     P +E     V   M+D + D N K V +  KY LPAIEKSGG GS+V+NSS AGST +A  +  G  PYA++KAAVD+L+KYAA+EA  H TRV S+APG + T + +   ++ DS    + K + LM RAGRPEE+AR VCFL SDDASFVTG+V   DGGAS+
Sbjct:    5 RFEGKVAIVTGASTGIGLATTAQLVREGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSKEATNKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASI 264
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A835YUN2_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN2_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.040e-73
Identity = 128/254 (50.39%), Postives = 170/254 (66.93%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEA--PEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLK 759
            +F G+VA++TGASSG+GLA A+Q+AAEGA+VV+ AR QD+L  A   IKAAGG         S D  N+ +V   L TYG L+++F+NAG +   P+ +V   + +K++D NVK VA+ LK+ LPAIE+SGG GSVV+NSSC G    A P F G G YA +KAA D++M+YAAIEA  H TRVNS+APG + T L+     E+ +      V L+ RAG   E++  VCFLASD+A F+TG+V   DGG  LK
Sbjct:    6 RFEGRVALVTGASSGMGLATARQLAAEGAQVVMVARTQDKLEAAAADIKAAGGXXXXXXXXVSTDAANEEMVKAALSTYGKLHVAFLNAGTYGGAPVDQVTEELFNKIFDANVKSVAFGLKHVLPAIERSGGGGSVVVNSSCMGLRAPANPTFTGAGLYAGSKAAADMIMRYAAIEASKHKTRVNSVAPGIVRTELMGEGMTEQGYHDFAAPVSLVGRAGTSNEVSALVCFLASDEARFITGSVHEIDGGWRLK 259
[Close]
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Match: A0A836CPZ3_9STRA (Short-chain dehydrogenase/reductase SDR n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ3_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.320e-68
Identity = 125/256 (48.83%), Postives = 164/256 (64.06%), Query Frame = 1 
Query:    4 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVE--AP---EEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASL 756
            +F GKVAI+TGAS+GIGLA   Q+  EGAKVVL +R QD+L  AV  IKA  G+   +  D S +  +K +VD  +  YG L+++                  M+D ++  N K   +  KY LPAIEKSGG+GS+V+NSS AGS  +A P+  GN  YA++KAAVD+L+KYAA+EA  H TR+NSIAPG + T + +  AP   +   D + K + LM RA  PEE+AR  CFL SDDASFVTG+V + DGGASL
Sbjct:    5 RFEGKVAIVTGASTGIGLATTVQLVHEGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSQEATSKAMVDLAMSKYGRLDIT----------------NEMVDTVFATNFKSAVFGFKYALPAIEKSGGQGSIVVNSSVAGSVASASPLASGNNAYAASKAAVDMLVKYAAVEAALHNTRINSIAPGTVRTPIFQVFAPGIQDNDIDELAKGIQLMQRAASPEEVARFTCFLLSDDASFVTGSVHLVDGGASL 244
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ90_9STRA5.050e-172100.00Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YKB8_9STRA3.180e-14686.05Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YRJ1_9STRA6.720e-13679.92Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835Z2Q8_9STRA1.040e-10968.11Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836C9I6_9STRA9.760e-10464.40Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836CAF4_9STRA1.930e-9460.71Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZCI5_9STRA4.410e-8053.15Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZEC4_9STRA1.030e-7751.92Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YUN2_9STRA1.040e-7350.39Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836CPZ3_9STRA1.320e-6848.83Short-chain dehydrogenase/reductase SDR n=2 Tax=Tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:91887..94439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172646|e_gw1.94.108.1
Descriptionoxidation-reduction process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Evalue8.83e-66
Seed ortholog2880.D8LQS3
Hectar predicted targeting categorysignal peptide
TranscriptId172968
TrackFilteredModels1
ProteinId172646
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172646gene_7928Tribonema minus UTEX_B_3156 geneContig_94 91887..94439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7928_1exon_7928_1Tribonema minus UTEX_B_3156 exonContig_94 91887..92036 +
exon_7928_2exon_7928_2Tribonema minus UTEX_B_3156 exonContig_94 92434..92583 +
exon_7928_3exon_7928_3Tribonema minus UTEX_B_3156 exonContig_94 93180..93401 +
exon_7928_4exon_7928_4Tribonema minus UTEX_B_3156 exonContig_94 94194..94439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7928CDS_7928Tribonema minus UTEX_B_3156 CDSContig_94 91887..92036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172646Trimin1|172646|e_gw1.94.108.1Tribonema minus UTEX_B_3156 polypeptideContig_94 91887..94439 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Trimin1|172646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_94:91887..94439+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTTACCGGGAAGGTAGCGATCATCACTGGTGCATCCTCTGGCAT
CGGCCTAGCGGCGGCTCAGCAGATGGCGGCAGAAGGCGCCAAGGTTGTGC
TGGCCGCGAGGGGGCAGGACCGGCTCGGCAAAGCGGTCGACAGCATCAAG
GCTGCCGGCGGTGAGGCTATTGGCGTTGTGATGGATGCATCAATAGATGA
AGACAACAAGCGACTGGTGGACACGACACTGGAAACATATGGATCACTCA
ACCTGAGCTTCATCAACGCGGGCGTTCACCTTGCAAAGCCCATCAGTGAG
GTGGATGGGTCCATGCTGGACAAGCTGTACGATGTCAACGTCAAGGGCGT
GGCGTACGCTCTCAAGTACCAACTTCCCGCCATTGAGAAGTCCGGCGGCA
AGGGGTCTGTGGTCATCAACAGCAGCTGTGCGGGGTCTACTGTAACGGCA
TTCCCCATCTTTAAGGGCAACGGACCGTACGCGTCGACCAAGGCGGCTGT
GGACATTCTGATGAAATACGCGGCAATAGAGGCCATCGACCACGGCACGC
GCGTCAACAGCATCGCCCCCGGCGCCATCTACACCAGCCTCGTCGAAGCG
CCCGAGGAGGTTTTTGATTCCATTGGCAAGATGGTGCACCTCATGCCGCG
CGCGGGGCGGCCGGAAGAGATAGCGCGCTGCGTGTGTTTCCTCGCCAGCG
ACGACGCGTCGTTCGTCACGGGAACGGTGATGATTGCTGATGGTGGCGCC
AGCCTCAAGGGTCCCTAG
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protein sequence of jgi.p|Trimin1|172646

>Trimin1|172646|e_gw1.94.108.1 ID=Trimin1|172646|e_gw1.94.108.1|Name=jgi.p|Trimin1|172646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MQFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIK
AAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISE
VDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTA
FPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEA
PEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGA
SLKGP*
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mRNA from alignment at Contig_94:91887..94439+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Trimin1|172646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2553bp|location=Sequence derived from alignment at Contig_94:91887..94439+ (Tribonema minus UTEX_B_3156 )
ATGCAGTTTACCGGGAAGGTAGCGATCATCACTGGTGCATCCTCTGGCAT
CGGCCTAGCGGCGGCTCAGCAGATGGCGGCAGAAGGCGCCAAGGTTGTGC
TGGCCGCGAGGGGGCAGGACCGGCTCGGCAAAGCGGTCGACAGCATCAAG
GTGCACCATGTGATTTGCCTAAGAGTTGAAAATGAAAAGATCCTGTGTCT
TAAGACCCATGCGTGCATCCCAGTTATGTGGCAGGTCTCCAGCAGAGGAG
CACTGACCTTATTCGCATAGAGGCACGCGTCATGCTTTTACAATGAAAGC
CAGCCAGCGACGCGCACTTCGGACAGTAGGAGTGTGTGCAACATGGCTGA
CTCTCGTGCCCGCCCACACCCAAGAATATGTGCTGTGTGTGTGTCACACT
TCCTGCACTTCATCTTCATATGGCTTGAGGCCCTACCGCCAAATCTTGTT
GCGCTCGATCCTTTTTTTGTTGATGAACTTCACCACTATCTTTCATTCAG
ATTCTAGTGCTGATCGCCATTACCGTCATCTCTTTTCAACATCTCAGGCT
GCCGGCGGTGAGGCTATTGGCGTTGTGATGGATGCATCAATAGATGAAGA
CAACAAGCGACTGGTGGACACGACACTGGAAACATATGGATCACTCAACC
TGAGCTTCATCAACGCGGGCGTTCACCTTGCAAAGCCCATCAGTGAGGTC
AGTACAGGACATGTACAGTACAAGGTATTCAACTTGAAGCATGCAGTGAT
TGCTGAACATGTGCAGCCACTTGCAGCACTTCGATGAACAGATATGCTCG
TCGATCATATTTAATGCTACAGGTGTAGTGCATATACAAGCATCTGAGTG
ACACGCGAATTGCGATCGACAGTATAAGATATTGTCAATCTGGAAGCAAC
TGGTCCAGTACAATGCGTCTGTGGCCATGAAAATCCACGGTGACATCTTG
TTGTGCCAGCCACAATACGATTCTCGCTTCTAAGACAATGTACAGTGAAA
GTGCCTTCACAACCCAATCTTGCAGTGCATGTAGCAGCTACACAATAGAA
TGTGGCCGGAAGGTCAAGGCACATACGTGGAGCTTGAACTTCATTCGACT
GATTTCACAGCAGCAGTTAATGTATCATTGCACATGCCAGCAGTAGTGTT
GCAGACAGCCGGCCTTCAGCACAGGCTGTGTGCTTCGCCACTGCTGCGCA
CTGAGGCAGTGCTCATCAACTAAGTAGCAAGCAGCGGTCAGCAAGCAGCA
AACAGCGCTCACCTAGCGTCCACTTTTTTTTCCCCCTCTTCAGGTGGATG
GGTCCATGCTGGACAAGCTGTACGATGTCAACGTCAAGGGCGTGGCGTAC
GCTCTCAAGTACCAACTTCCCGCCATTGAGAAGTCCGGCGGCAAGGGGTC
TGTGGTCATCAACAGCAGCTGTGCGGGGTCTACTGTAACGGCATTCCCCA
TCTTTAAGGGCAACGGACCGTACGCGTCGACCAAGGCGGCTGTGGACATT
CTGATGAAATACGCGGTGAGCTGCAGCTGTGCTTGAGGGTGTGTCTACAT
GGGTTGTGTCGTTTGATAAGGCGTGCATTCAAGTCCCACATGGCATGTCG
CACAGAAGGCAGCATGTACTTCAAAGTATGCACTTGGTTCATACAGCGTA
TACTCGGCGTGTTTAGCACCCAGATGTGCAGTTTATTGCAGCCCTACTAT
CATGTGTGTCGCGCGCTTACCTATGATCATGAATGCTGAGGGACCTCTGC
TTTTTGTGCTCAGAAAAGTTGGTGCAGCGCTTGCATCATGGCTCAGTTGG
CAGAGTTCACCGTTTCGTTGATGGTTGTTTGCTCACACCTCAAACATTGG
CGATTGGGGCATGCGTACAATATCACTAGAGGAATATTTAGCATCCTGGT
TGTCATTTCTCAACCAGACCGACAAAAGATAAGTTGTAGATCACAAGTAG
GTAAAATTGATCACGCAGGTTCATGTACTTTTGCCAATGACCTATGTGAG
GCGGTAGCATTGTGTACCTGCATGAAGACTTGACCACTTTTCTTCCAAAA
TCTGCAACGGGGATTCAAGCGACCGACGATGCTTGTCCAGGAGTTTGTTT
ACCGTGTTTGAGCAGCGCCGACGCTACCACTTCTTCTGCATCGGGGTGAG
GGCTTGCACGTGTAGGGTGCGAGCTAAAGTTGGACTGCAATCAACGGCCA
AGGCTACGCAGCATGTACCGCAGGTGGCTGTTGACTTCAAACGATGAGCT
TTGCAGTAAGCCCAACTTCAACCCTAACCCCAACTTCAACCCTCTCCCTT
ACTGCAGGCAATAGAGGCCATCGACCACGGCACGCGCGTCAACAGCATCG
CCCCCGGCGCCATCTACACCAGCCTCGTCGAAGCGCCCGAGGAGGTTTTT
GATTCCATTGGCAAGATGGTGCACCTCATGCCGCGCGCGGGGCGGCCGGA
AGAGATAGCGCGCTGCGTGTGTTTCCTCGCCAGCGACGACGCGTCGTTCG
TCACGGGAACGGTGATGATTGCTGATGGTGGCGCCAGCCTCAAGGGTCCC
TAG
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Coding sequence (CDS) from alignment at Contig_94:91887..94439+

>mRNA_7928 ID=mRNA_7928|Name=jgi.p|Trimin1|172646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_94:91887..94439+ (Tribonema minus UTEX_B_3156 )
ATGCAGTTTACCGGGAAGGTAGCGATCATCACTGGTGCATCCTCTGGCAT
CGGCCTAGCGGCGGCTCAGCAGATGGCGGCAGAAGGCGCCAAGGTTGTGC
TGGCCGCGAGGGGGCAGGACCGGCTCGGCAAAGCGGTCGACAGCATCAAG
GCTGCCGGCGGTGAGGCTATTGGCGTTGTGATGGATGCATCAATAGATGA
AGACAACAAGCGACTGGTGGACACGACACTGGAAACATATGGATCACTCA
ACCTGAGCTTCATCAACGCGGGCGTTCACCTTGCAAAGCCCATCAGTGAG
GTGGATGGGTCCATGCTGGACAAGCTGTACGATGTCAACGTCAAGGGCGT
GGCGTACGCTCTCAAGTACCAACTTCCCGCCATTGAGAAGTCCGGCGGCA
AGGGGTCTGTGGTCATCAACAGCAGCTGTGCGGGGTCTACTGTAACGGCA
TTCCCCATCTTTAAGGGCAACGGACCGTACGCGTCGACCAAGGCGGCTGT
GGACATTCTGATGAAATACGCGGCAATAGAGGCCATCGACCACGGCACGC
GCGTCAACAGCATCGCCCCCGGCGCCATCTACACCAGCCTCGTCGAAGCG
CCCGAGGAGGTTTTTGATTCCATTGGCAAGATGGTGCACCTCATGCCGCG
CGCGGGGCGGCCGGAAGAGATAGCGCGCTGCGTGTGTTTCCTCGCCAGCG
ACGACGCGTCGTTCGTCACGGGAACGGTGATGATTGCTGATGGTGGCGCC
AGCCTCAAGGGTCCCTAG
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