mRNA_7997 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172544
Unique NamemRNA_7997
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A836C777_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C777_9STRA)

HSP 1 Score: 739 bits (1907), Expect = 1.500e-268
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 1
Query:    1 MRLALPVLRVLLHALIWAYCHGSLTRANAAGSRPALPAASSAPPQQLTSRRGVLSAVVAATTAVLYPDQSWANVNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCARRPLTTPLDLPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRLLWQQLPDADV 1182
            MRLALPVLRVLLHALIWAYCHGSLTRANAAGSRPALPAASSAPPQQLTSRRGVLSAVVAATTAVLYPDQSWANVNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCARRPLTTPLDLPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRLLWQQLPDADV
Sbjct:    1 MRLALPVLRVLLHALIWAYCHGSLTRANAAGSRPALPAASSAPPQQLTSRRGVLSAVVAATTAVLYPDQSWANVNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCARRPLTTPLDLPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRLLWQQLPDADV 394          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A8J6CK90_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CK90_DIALT)

HSP 1 Score: 249 bits (636), Expect = 1.510e-76
Identity = 144/315 (45.71%), Postives = 183/315 (58.10%), Query Frame = 1
Query:  220 VNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRV-LSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAE-DVYARVNGGRPFRDVAVTLATEGGGAVTLCARRPL-TTPL-DLPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRL 1152
            V+++  R + +PL +CGGS+C +F V+G  FR V+DTGSPFL+VAGSCT+ WGC+ GEG P+GL +T E Y G  GPV+W++G +  G           +    +FGVLSDELV RPGGVFLGLVK    GIRPTFL QT   A   D      L LS APL+P   A  +P+VDLRP G PV+HYA R                         K V+ IFDTGTTG+A+S ALWDA  D      G R    V V L       VT+   RP  TTP+  +PW+ F+   HL+V+GL F+    LT+DVD +R+
Sbjct:   35 VDTSYPRTLTVPLTDCGGSYCAVFRVDGTPFRAVIDTGSPFLSVAGSCTKLWGCYTGEGEPAGLAETWETYDGKEGPVAWRRGAVAFGAHE--------LSRSVVFGVLSDELVGRPGGVFLGLVKREAAGIRPTFLSQTPFEAFTVDLRAEPKLVLSTAPLVP-VDARWLPMVDLRPFGSPVEHYATRVSAMRVNGRAIRPPD---------GKPVFAIFDTGTTGMAMSGALWDASLDACLAAAGARWPGVVDVDLGMPRSPPVTMSVDRPFPTTPIRKIPWKLFD--GHLIVLGLSFLQDRALTVDVDKKRM 329          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A7S4UFA7_GUITH (Hypothetical protein n=4 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UFA7_GUITH)

HSP 1 Score: 219 bits (557), Expect = 1.470e-63
Identity = 137/338 (40.53%), Postives = 183/338 (54.14%), Query Frame = 1
Query:  235 GRVINLPLENCGGSWCTLFAV-EGNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFN--------KFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPR-RVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWD-------AEDVYARVNGGRPFRDVAVTL-ATEGGGAVTLCARRPLTTPLDLPWRGFNERAHLLVIGLDFMSSVVLTIDVD-------DRRLLWQQLPD 1173
            G ++ +PL+ C  S+C  F + +   FR V+DTGSPF TVAGSCT+RWGC++G+G  SGL  T E+YA   G V WK     + FL +      F             +FGVLSD LV+RPGGVFLGL+K     IRPTFLGQTD  +++ D    + L LS  PLI R     + L DLR  GDPVQHYA  A                          VY I DTGTTGL +SR L++       ++ + ++    R ++ V+V+L  TEGG  V + AR P+TTP+D+PW  F  R  LLV+GL F+    +T+D+        D+R   +  PD
Sbjct:  111 GSLVRIPLQVCDDSYCIFFNINDAGPFRAVVDTGSPFFTVAGSCTQRWGCYKGQGSDSGLAPTYEVYAAKEGEVVWKTA--RISFLNATGPGAAFAGAVRGVRGGIPLVFGVLSDVLVARPGGVFLGLIKEREDDIRPTFLGQTDFTSMQIDLSTSKSLVLSTRPLIARGSHSLIQLQDLRVFGDPVQHYACLANSMTVNGYKLDFGDDP----------VYTIVDTGTTGLTMSRELYEEILFLYASKKISSKA---RLWKKVSVSLEGTEGG--VEIEARNPITTPVDIPWPKFRSR--LLVLGLSFIEGTTITLDLKQGYMSIVDKRQTTRLQPD 429          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A448ZJV2_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJV2_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.600e-51
Identity = 131/365 (35.89%), Postives = 180/365 (49.32%), Query Frame = 1
Query:  199 PDQSWANVNSNGG--RVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSC----TRRWGCFRGEG--VPSGLDDTIEIYAGNSGPVSWKKGMLELGFL-------------------------RSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRR--VLSLSRAPLIPRACADAVPLVDL--RPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRP-FRDVAVTLATEGGGAVTLCARRPLTTPLD--LPWRGFNER-------AHLLVIGLDFMSSVVLTIDVDDRRL 1152
            P   + +    GG   ++ +PL + G      ++V+G+ F+ VLDTGSPFL + GSC     R+ GC+R +G  VPS L+ TIEI+ G  G V W+      GFL                                     + +FGV S+ ++  PGGVF G+++     IRP+FLGQTD +A R D   R   L+LSR  L+  A  D +P  DL  R  GDPV HY ARA                X         ++VIFDTG TG+ VSR L+D   + AR    +  F  V +   TEGG  VTL A +PLTTP D    W+ F +R        H++V+GL F+   VLT+D+D++RL
Sbjct:  139 PVLGYTSPGPGGGPPSLLTVPLASTGRELLVAYSVDGSPFKAVLDTGSPFLMIPGSCGANTRRKSGCYRNQGRPVPS-LEPTIEIFDGFEGEVEWRSA--SFGFLDIAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEVVFGVASESIMGGPGGVFFGMIRDTDARIRPSFLGQTDASAFRIDLASRPRTLTLSRTALL-GAAPDRIPTTDLLRRRYGDPVGHYTARAKSVVVDGVPLAETASGX------GTKIFVIFDTGVTGMVVSRGLFDERYLQARRQRSKTLFGRVELAFETEGGREVTLAANKPLTTPFDPERTWKRFPKRREGRKANVHIIVMGLAFLDDRVLTVDIDEQRL 493          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A7S4K7Y4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7Y4_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.880e-50
Identity = 126/318 (39.62%), Postives = 164/318 (51.57%), Query Frame = 1
Query:  235 GRVINLPLE--NCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTR----RWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFP--RRVLSLSRAPLIPRACADAVPLV-DLRP-LGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRP-FRDVAVTLATEGGGAVTLCARRPLTTPLD-LPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRL 1152
            G  + +PLE       +   + ++G++FR V+DTGSPFLT+ G+C      +WGC+R EGVPSGL +T E + G  G V W+       F  ++         K IFGVLS  L    GGVF GLV+     IRP+FLGQT V A   D     + L+LS  PLI R   D + LV DLR   GDP  HY A+                         K ++ I DTG TG+ VSR ++D   + AR    R  + DV V+  T  G AVTL A  PLTTP    PW+ F+  AHL+V+GL F+    LTID+   RL
Sbjct:  106 GEKVTVPLEWNEKIQGYLVCYRIDGDLFRAVVDTGSPFLTIPGTCDPTTKFKWGCYRNEGVPSGLKNTFEQFDGVEGEVEWRTAQ----FTFANATGSMIGPPKMIFGVLSPRLQGLSGGVFFGLVRDTDSWIRPSFLGQTVVEAFNIDLASAEKSLTLSTTPLIGRD-DDYIQLVNDLRRRYGDPTLHYTAKVKKLTVNGSPLAASD---------GKPIFAIIDTGVTGMIVSREIFDERYISARAQKERKMWNDVVVSFNTARGKAVTLTADAPLTTPFGGKPWKNFD--AHLIVLGLSFLEGNNLTIDISTDRL 407          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A7S0L8M6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L8M6_9EUKA)

HSP 1 Score: 181 bits (460), Expect = 1.700e-49
Identity = 139/415 (33.49%), Postives = 186/415 (44.82%), Query Frame = 1
Query:  148 RRGVLSAVVAATTAVLYPDQSWANVNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRR-------------WGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKF---IFGVLSDELVSRPG-GVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCA-----RRP---------------------LTTPLDLPW-------------------------------------RGFNERAHLLVIGLDFMSSVVLTIDVDDRRL 1152
            RR VL+A  A  TA L P +  A           +PL  CGG++C  +A++   F+GV DTGSPF+ V G+C+               WGCFRG G PSGL DT E++ G    V W++G   L  L+  +DDE  +  +    +FGV+ +   +R G GVFLGL K     IRPT L Q DVAALRFDF +R L LSR  LIPR+  DAV LVDLR  G PV +YA R                         K    + DTGTTG++VS  L+D+  +  +      +RD  +  ATE  G   + A     R+P                     + +P+ +PW                                      G     H+L IG+ F+    LTID+DD R+
Sbjct:   17 RRAVLAATTA-LTASLLPFRVPALAVPFSDLPAVVPLYLCGGAYCLAYAIDEQPFKGVADTGSPFILVDGTCSAADMQTSKTAALANIWGCFRGTGQPSGLADTSELFGGQDVGVQWRRGAFRLEQLK--IDDELRLMPRIDDAVFGVVREITENRGGSGVFLGLCKRRLPRIRPTLLEQIDVAALRFDFLKRTLELSRTSLIPRSAVDAVRLVDLRLAGAPVANYACRVDRLYVNGRAVALD-----------KPCVAVIDTGTTGVSVSDELFDSGLIPQQ------WRDARIEFATEHRGTCAVEASVKKRRKPSAGIPAIELPLDAPEYDEFPLVVSPVHVPWFEPGFGNEECADGEPYQCNGRPIGQRKPFLETLRFRALGLGPSPHVLFIGMTFLWQRQLTIDIDDGRM 411          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: A0A7S3XLC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC1_HETAK)

HSP 1 Score: 166 bits (419), Expect = 8.800e-46
Identity = 96/213 (45.07%), Postives = 120/213 (56.34%), Query Frame = 1
Query:  313 RGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNK--FIFGVLSDELV--SRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAA---------------KDVYVIFDTGTT 894
            RGVLDTGSPFLTV  SC+ +WGC+ G   PSGLDDT+E+YA + G V WKKG++  G  ++        + +   +FG+L + LV  S  GGVF+GLVKY    IRPTFLGQT   +LRF+FP + L LS  PLI ++  DA+ L DLRPLGDPV HYA  +                      AA               K  YV+FDTG T
Sbjct:    1 RGVLDTGSPFLTVPKSCSPQWGCWEGGYDPSGLDDTVEVYAADEGTVEWKKGLVSFGSFQNPQTGANMTWGEPGLVFGLLPNTLVRYSGGGGVFIGLVKYKEDDIRPTFLGQTSFQSLRFNFPEKQLFLSTKPLISKSI-DAIKLADLRPLGDPVFHYACESNGVWVNGQLLAPEEGAPAAALLAAPRLGDGRPPPGMLDKKKTYVVFDTGCT 212          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: C1MYX8_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MYX8_MICPC)

HSP 1 Score: 164 bits (415), Expect = 3.380e-42
Identity = 125/372 (33.60%), Postives = 166/372 (44.62%), Query Frame = 1
Query:  220 VNSNGGRVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTRRWGCFR-GEGVPSGLDDTIEIYA-GNSGPVSWKKGMLEL------------------------------GFLRSDVDDEG--FIFNKFIFGVLSDELVSRPGGV------FLGLVKYNTKGIRPTFLGQTDVAALRFDF------------PRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDV-YARVNGGRPFRDVAVTLATEGGGAVTLCARRP-LTTPLDLPWRGFNERAHLLVIGLDFM-SSVVLTIDVDDRRLLWQQLP 1170
            + ++    I +P+   GG++   +A+     RGVLDTGSPF+T+ G C + WGC R  +  PSG  +T EIY     G   W  G +                                G +++D D     F+F++ + GV S E+ SR GG       F+GLVK     IRPTFLGQTDV +   DF             R  L+LSR  LIP      + +VDLRPLG PV HYA R                       + K +YV+FD+GTTG+ V R L+D  D+           RD      T G    T   R   L TP+D+PW G    AH++  GL FM +   LT+D D RRL     P
Sbjct:  141 LRASSASSIRIPMTLEGGTYVVRYAIGDASVRGVLDTGSPFVTMDGRCGKYWGCLRESDARPSGYGETYEIYGLQEDGVTKWVLGDVRFEGTEAGDGXXXXXXXXXXXMVPVSQNGPQPGLIKNDDDAAATKFVFSEVLLGVTS-EVSSRQGGSSVGTAPFVGLVKERQDWIRPTFLGQTDVTSFALDFNSGAFSSHWSPYDRDQLTLSRRALIPDDAPGVMEMVDLRPLGSPVFHYAVRVEELWINGGKHRSK---------SNKPIYVVFDSGTTGMLVDRDLFDTSDLALGCFECHMKLRDRDGARVTIGSSLRTCVGRCLFLPTPIDVPWEGVPRDAHVVFAGLAFMFNQGTLTVDADARRLRLGNAP 502          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: R1DNI7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNI7_EMIHU)

HSP 1 Score: 161 bits (407), Expect = 7.440e-42
Identity = 127/391 (32.48%), Postives = 165/391 (42.20%), Query Frame = 1
Query:  238 RVINLPLENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVAGSCTR--RWGCFRGEGVPSGLDDTIEIYAGNSGPVSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDEL-VSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRPLGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCA---RR------------------------PLT-TPLDLPW-----------------------------------------------------RGFNERAHLLVIGLDFMSSVVLTIDVDDRRLLW 1158
            R + +PL  CGG++C  + ++G  FR ++DTGSPFL V G+CT    WGC+RG G  SGLDDT E + G      W+     +G++    ++   +  +  FGV+         G VFLGL K     IRPTFL QT VA+L+FDF R  L+LS  PLIPR   DA+ L+DLRP G P+     R                         +    + DTGTTGL+VS +L+ A D         P RD  V L TE G    L A   RR                        PL  +P+D+PW                                                      G  ER H+L +GL F     LTIDVDD RL +
Sbjct:   38 RPVVVPLTLCGGAYCVRYTLDGQPFRAIVDTGSPFLLVDGTCTEASEWGCYRGAGRASGLDDTEEEFGGQITGTQWR-----VGYMSLLGENAALVLPETTFGVVRTYTGKGGSGAVFLGLAKRRLPRIRPTFLEQTSVASLQFDFLRGSLTLSPRPLIPRG-TDAIRLLDLRPRGAPISAAVCRIRRLYVNGELLQLD-----------RPAVAVIDTGTTGLSVSESLFCAADGPLG-----PIRDCRVELVTEQGRVCALEASVRRRQVPSRFGDVPLVDVPDGAPESDAFPLVVSPVDVPWFEQDFGQGDALEQRVQAEAARDDALGDPYRACQARVQRAATRGAAPGEPLSRLDGLGERPHVLFVGLAFFWRRQLTIDVDDGRLAF 406          
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Match: K0RDI1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDI1_THAOC)

HSP 1 Score: 160 bits (406), Expect = 2.700e-41
Identity = 122/366 (33.33%), Postives = 177/366 (48.36%), Query Frame = 1
Query:  160 LSAVVAATTAVLYPDQSWANV-NSNGGRVINLPL--ENCGGSWCTLFAVEGNVFRGVLDTGSPFLTVA----GSCTR--RWGCFRGEGVP-SGLDDTIEIYAGNSGPVSWKKGMLELGF--------------LRSDVDDEGFIFNKFI-FGVLSDELVSRPGGVFLGLVKYNTKGIRPTFLGQTDVAALRFDFPR-----RVLSLSRAPLIPRACADAVPLV-DLRP-LGDPVQHYAARAXXXXXXXXXXXXXXXXXXXXXXAAKDVYVIFDTGTTGLAVSRALWDAEDVYARVNGGRP-FRDVAVTLATEGGGAVTLCARRPLTTPL--DLPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRL 1152
            LS++V +T+   +P  + A   N+  G  + +PL       ++   + V G++   ++DTGSPFL V      +C+    WGC R EG P  GL  T+E + GN G V W                       L S   D+  +F  ++ FG+LS+ L+   GG+FLGLVKY  + IRP+FL Q++V A   D        + LSL     +PR     +PLV DL    GDP  HY A A                        + +YVIFDTG +GL +S AL+D     AR N  +  F  V +T  T  G  +TL +++PLTTPL  + PW G     +LLV+GL F+   +LT+D+   ++
Sbjct:   94 LSSLVLSTSTACWPTIAAAGESNTATGASLRIPLTFRKRLSAYTVSYRVGGSIIEAIVDTGSPFLFVPKPSESTCSPSYEWGCLRDEGSPVPGLTPTVERFDGNEGYVDWSNSTFSFDRTLNDQATTINDVYPLTSSSADQSALFPVYVTFGILSESLLDGTGGIFLGLVKYTERRIRPSFLSQSNVEAFSIDLRNIEGRVKSLSLYGGGQLPRQDVPGIPLVRDLNQRFGDPTIHYCAVADKICVNDNVLASSTRK--------EKLYVIFDTGCSGLQLSPALFDERYATARANKEKSLFGTVDITFQTAEGNTLTLSSKKPLTTPLGSNRPW-GKRINGYLLVVGLAFLEDKLLTVDICKEKI 450          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172544 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C777_9STRA1.500e-268100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J6CK90_DIALT1.510e-7645.71Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S4UFA7_GUITH1.470e-6340.53Hypothetical protein n=4 Tax=Guillardia theta TaxI... [more]
A0A448ZJV2_9STRA4.600e-5135.89Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A7S4K7Y4_9STRA2.880e-5039.62Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0L8M6_9EUKA1.700e-4933.49Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3XLC1_HETAK8.800e-4645.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
C1MYX8_MICPC3.380e-4233.60Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
R1DNI7_EMIHU7.440e-4232.48Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
K0RDI1_THAOC2.700e-4133.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:474990..478559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172544|e_gw1.94.24.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CF0B@1|root,2S3QI@2759|Eukaryota
Evalue9.98e-57
Seed ortholog55529.EKX31891
Hectar predicted targeting categorysignal peptide
TranscriptId172866
TrackFilteredModels1
ProteinId172544
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172544gene_7997Tribonema minus UTEX_B_3156 geneContig_94 474990..478559 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7997_1exon_7997_1Tribonema minus UTEX_B_3156 exonContig_94 474990..475296 +
exon_7997_2exon_7997_2Tribonema minus UTEX_B_3156 exonContig_94 476201..476310 +
exon_7997_3exon_7997_3Tribonema minus UTEX_B_3156 exonContig_94 477465..477670 +
exon_7997_4exon_7997_4Tribonema minus UTEX_B_3156 exonContig_94 477998..478559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7997CDS_7997Tribonema minus UTEX_B_3156 CDSContig_94 474990..475296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172544Trimin1|172544|e_gw1.94.24.1Tribonema minus UTEX_B_3156 polypeptideContig_94 474990..478559 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7997 ID=mRNA_7997|Name=jgi.p|Trimin1|172544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1185bp|location=Sequence derived from alignment at Contig_94:474990..478559+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTGGCGCTCCCTGTGCTGCGAGTGCTCTTGCATGCACTGATTTG
GGCCTATTGTCATGGGAGCTTGACCAGAGCGAATGCTGCAGGATCTCGGC
CCGCTTTGCCTGCTGCGAGCTCGGCTCCTCCTCAACAGCTGACCTCTCGT
CGCGGAGTGCTGTCAGCTGTCGTGGCAGCGACGACGGCGGTTCTGTATCC
TGATCAAAGCTGGGCAAACGTAAACTCGAACGGGGGCAGGGTGATAAACT
TGCCACTGGAGAATTGCGGCGGGAGCTGGTGCACGCTATTTGCGGTAGAA
GGAAACGTATTTCGTGGGGTGCTGGACACCGGCTCCCCTTTCCTTACGGT
GGCAGGCAGCTGCACGCGGCGATGGGGCTGCTTCAGGGGCGAAGGCGTGC
CCAGTGGCCTAGACGATACGATCGAGATTTACGCGGGCAACTCGGGGCCC
GTGTCCTGGAAGAAGGGCATGCTGGAGCTGGGGTTCCTGCGCAGCGACGT
CGACGACGAGGGCTTCATCTTCAACAAGTTTATCTTTGGCGTGCTGAGCG
ATGAGCTCGTGAGCCGCCCCGGCGGGGTCTTCCTGGGGCTGGTCAAGTAC
AACACCAAGGGCATCCGGCCCACGTTCCTCGGGCAGACGGACGTCGCGGC
GCTGCGCTTCGACTTCCCGCGGCGCGTGCTGAGCCTGTCGCGCGCGCCGC
TCATACCGCGCGCGTGCGCCGACGCCGTCCCCCTCGTCGACCTGCGCCCG
CTCGGCGACCCCGTGCAGCACTACGCGGCGCGCGCCGCGGCGGTCACGAC
CAAGCAGCGCGCGCTGCACCCGCCGCCGCCGCCGCCAGCGCACGGCGCCG
CCGCCGCCAAGGACGTCTACGTCATCTTCGACACGGGGACGACGGGGCTC
GCCGTGTCGCGCGCGCTGTGGGACGCGGAGGATGTCTACGCGCGCGTCAA
TGGCGGGCGCCCCTTTCGCGACGTCGCCGTGACGCTCGCGACGGAGGGCG
GCGGTGCGGTGACGCTGTGCGCGCGCCGCCCGCTCACGACGCCACTCGAC
CTGCCGTGGCGCGGCTTCAACGAGCGCGCACACCTCCTCGTCATCGGCCT
CGACTTCATGTCGAGCGTCGTGCTGACCATCGACGTCGATGACCGCCGCC
TGCTGTGGCAGCAGCTGCCGGACGCGGATGTGTGA
back to top

protein sequence of jgi.p|Trimin1|172544

>Trimin1|172544|e_gw1.94.24.1 ID=Trimin1|172544|e_gw1.94.24.1|Name=jgi.p|Trimin1|172544|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=395bp
MRLALPVLRVLLHALIWAYCHGSLTRANAAGSRPALPAASSAPPQQLTSR
RGVLSAVVAATTAVLYPDQSWANVNSNGGRVINLPLENCGGSWCTLFAVE
GNVFRGVLDTGSPFLTVAGSCTRRWGCFRGEGVPSGLDDTIEIYAGNSGP
VSWKKGMLELGFLRSDVDDEGFIFNKFIFGVLSDELVSRPGGVFLGLVKY
NTKGIRPTFLGQTDVAALRFDFPRRVLSLSRAPLIPRACADAVPLVDLRP
LGDPVQHYAARAAAVTTKQRALHPPPPPPAHGAAAAKDVYVIFDTGTTGL
AVSRALWDAEDVYARVNGGRPFRDVAVTLATEGGGAVTLCARRPLTTPLD
LPWRGFNERAHLLVIGLDFMSSVVLTIDVDDRRLLWQQLPDADV*
back to top

mRNA from alignment at Contig_94:474990..478559+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7997 ID=mRNA_7997|Name=jgi.p|Trimin1|172544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3570bp|location=Sequence derived from alignment at Contig_94:474990..478559+ (Tribonema minus UTEX_B_3156 )
ATGAGACTGGCGCTCCCTGTGCTGCGAGTGCTCTTGCATGCACTGATTTG GGCCTATTGTCATGGGAGCTTGACCAGAGCGAATGCTGCAGGATCTCGGC CCGCTTTGCCTGCTGCGAGCTCGGCTCCTCCTCAACAGCTGACCTCTCGT CGCGGAGTGCTGTCAGCTGTCGTGGCAGCGACGACGGCGGTTCTGTATCC TGATCAAAGCTGGGCAAACGTAAACTCGAACGGGGGCAGGGTGATAAACT TGCCACTGGAGAATTGCGGCGGGAGCTGGTGCACGCTATTTGCGGTAGAA GGAAACGGTGAGTGTCCTGCTGCCCGCCTGCGTAGGCCTCGTGCAGCCCT TGCTGCATCACGCGTATAGGTGCTGTCTCCGAGAATTTGTTGGACTTTAT CAGCATCTCTCCCCCGTGCTTGGCCCCAAGCCCCATGCATGCAAACCGTC GAGAGGTGTACCAAACAGCAACTTCTTGCGCTGCGCATACTTCTCACCGC AAACACGCTCCCTCATGTCTTGGTAAAGTGTTGCATAAGAACAGGATATT GTCACATTGCAGGTGTTCTGTTGCCACTGCGCTATGGCACAGCGCTGCAG CACCTCTGCCGCTTCTCATATACATTAGATACGGCCTGGCACTGCAGCCC CAACACCTGACTGGAGCTGCCACATAAAGCGGTCGGACTCTGTAGGCTTT GCATGTTGTTCTGCTGGGTGTGAAACTCAGAGGAGCCTCGCCGGCACCAG CAGTCAACATCTTTGTGCTTTTGACCGGCTGCTTGCGCACCAGCAATTGC CCTAGTCGTCAGGCGTCCGTTGTGGTGCCGCAAATTGTGGTGTTCCAAAT GTTTTGCTGAGTGCAGCAGTGAAGGCTCTGTCCGACACACAGTTCTGCAA TGCCCCTCAATCACAAGCTCTGTGCATGCCGGAGATCGCTCGCGCTGTCA GCGCTGTGCATCACCACATCTACGCTAGCGACGGCGTGCTGGTGTTGTCA TCTCAAAAGGTTTCTCCTCTTCCCGCACTGCCAGCCAGCCCCGTTGCATG ACCACGCGCCTGTGAATGCGCTTGCGTTGCGCAGCTGCTGCTACGCGTAA AGCATCACAGTGCTCTACCATGGTCAGCAAACGTCAGTGTTTGCACTAAT ACTGATGATCGCGTGTCTGGTGCCCTCTGCTCCCCCCCCCCCTCCCTCCT TGCACTGTCAGTATTTCGTGGGGTGCTGGACACCGGCTCCCCTTTCCTTA CGGTGGCAGGCAGCTGCACGCGGCGATGGGGCTGCTTCAGGGGCGAAGGC GTGCCCAGTGGCCTAGACGATGTGAGTCTTGTGCATTTTCATGAGGTGTC GGTCTGCACACTGTTGCAAGATGGATCTCTCGCTCTATGCGCCGACAGAC CTCTTGCGTGCATATAGAATGAGGTGAAAGAGTGGGCCTCGCCCAGCTGC CTAGACGATGTGAGTCTTGTGCACTTCCATGCGGCATTGGCAAGGATACT GTCAGCATCTCGCTCTCTTGGCGCCTAACAGGCCCCGGCATGTGTGAAGC ATGAGGTGCGAGAGATGGGTGCGATCGCAATAACGCGCTACGCCGCATGG CGTTTACACACTTCAGTAACGTGCACAGGATTCAGCTCCAGCCGAGTGAT GTCTTCTCCTCTCTGAATGTCGGCGCAATTCATCGCCACGTGTGCACAGA GACGTCGGCGTGTGCGCTCATGGATGTTGAAGTTGCTGGGATTGAACGTG AAGTTGCGCTTCACAGTCTTCATGGCCTCACCTGGCATGCATGGTGACAA ATCGTAAGTGCCAGAGAGCGACTAGTGGCGCCAATCGAGTGTGTATCGCT CACCACCGTGCCAGACATCGACGACCAAGGGACTCAAGCTGACACAAGAC TCGCGGCTACTGCATGTACTGCGTTGAGAACCAGCAGGCAAAATATGAAC AGCCACGTCAGTGCCCAACAGGACCCAACCTCAACATGGGCTGAGCTCTG CGCTGTCACCCATCCACGGCCGCTGCCGACAGCCACACTCATACAGGGCA GCCGCCACGCCCTGTCCTCAGCAGAAGGTGCACAGTTCAATCACTCGCGG TGACCTGCACGCACGCGCACACGGCGCTTGTCCGTCCGCGTACACCTGTC CTGCTTTTGAATTCGATGGCGTGCGGCTCCGCCCATGGACGTGCTGCTCA CATTGCGCAGCCCGCCGCCTCGTGCACGCGCGACAGCAGCATCTAACCCC AACCCTAACCCTACGACATGCAATGCGTGCTGAACTCACGTGAGACCCTG CGTCCTGAGCACGGACTGCAGTAAGCAAACGCCCGCGCCCCCTGCCTCCG CGCGCGCGCGACCGCCGCGGCAGCACTTAACCCTAACCCTAGCCCCAACC CTAACCCTATTTTCAACCCCGACCCTAAGCTGACCCTGTTGAGCATCGCC ACGCGTGCGTCCGTCCCGCAAACAGACGATCGAGATTTACGCGGGCAACT CGGGGCCCGTGTCCTGGAAGAAGGGCATGCTGGAGCTGGGGTTCCTGCGC AGCGACGTCGACGACGAGGGCTTCATCTTCAACAAGTTTATCTTTGGCGT GCTGAGCGATGAGCTCGTGAGCCGCCCCGGCGGGGTCTTCCTGGGGCTGG TCAAGTACAACACCAAGGGCATCCGGCCCACGTGAGTGCGCGGAAGGGGA TGAGCGCGACGCTGTGTTTCAGTGTACCCGTGCTGTGCGTTCAGCGTACT GGCACTGTACCCACGCTGCTCTGCTCACGTGGTGACCTAGTGGCAGCGTG TGCAGCAGTATGTGGGCCTGGTGTGCACAGCACAGCGCGACTTGAAGTCG TGTTCATAGCAAACTCATCCCATGCTTCTGCGGTGACTTCGGTTGCTGTT GTCTGCCACAGCACACGACTTGCGGGCGCATACCCGCTTGACTACTCAAC TGAAATCCAACACTCATGCACTCACGTACTCGCCGACTCGACTCGCGCGC GCGCGCAGGTTCCTCGGGCAGACGGACGTCGCGGCGCTGCGCTTCGACTT CCCGCGGCGCGTGCTGAGCCTGTCGCGCGCGCCGCTCATACCGCGCGCGT GCGCCGACGCCGTCCCCCTCGTCGACCTGCGCCCGCTCGGCGACCCCGTG CAGCACTACGCGGCGCGCGCCGCGGCGGTCACGACCAAGCAGCGCGCGCT GCACCCGCCGCCGCCGCCGCCAGCGCACGGCGCCGCCGCCGCCAAGGACG TCTACGTCATCTTCGACACGGGGACGACGGGGCTCGCCGTGTCGCGCGCG CTGTGGGACGCGGAGGATGTCTACGCGCGCGTCAATGGCGGGCGCCCCTT TCGCGACGTCGCCGTGACGCTCGCGACGGAGGGCGGCGGTGCGGTGACGC TGTGCGCGCGCCGCCCGCTCACGACGCCACTCGACCTGCCGTGGCGCGGC TTCAACGAGCGCGCACACCTCCTCGTCATCGGCCTCGACTTCATGTCGAG CGTCGTGCTGACCATCGACGTCGATGACCGCCGCCTGCTGTGGCAGCAGC TGCCGGACGCGGATGTGTGA
back to top

Coding sequence (CDS) from alignment at Contig_94:474990..478559+

>mRNA_7997 ID=mRNA_7997|Name=jgi.p|Trimin1|172544|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1185bp|location=Sequence derived from alignment at Contig_94:474990..478559+ (Tribonema minus UTEX_B_3156 )
ATGAGACTGGCGCTCCCTGTGCTGCGAGTGCTCTTGCATGCACTGATTTG
GGCCTATTGTCATGGGAGCTTGACCAGAGCGAATGCTGCAGGATCTCGGC
CCGCTTTGCCTGCTGCGAGCTCGGCTCCTCCTCAACAGCTGACCTCTCGT
CGCGGAGTGCTGTCAGCTGTCGTGGCAGCGACGACGGCGGTTCTGTATCC
TGATCAAAGCTGGGCAAACGTAAACTCGAACGGGGGCAGGGTGATAAACT
TGCCACTGGAGAATTGCGGCGGGAGCTGGTGCACGCTATTTGCGGTAGAA
GGAAACGTATTTCGTGGGGTGCTGGACACCGGCTCCCCTTTCCTTACGGT
GGCAGGCAGCTGCACGCGGCGATGGGGCTGCTTCAGGGGCGAAGGCGTGC
CCAGTGGCCTAGACGATACGATCGAGATTTACGCGGGCAACTCGGGGCCC
GTGTCCTGGAAGAAGGGCATGCTGGAGCTGGGGTTCCTGCGCAGCGACGT
CGACGACGAGGGCTTCATCTTCAACAAGTTTATCTTTGGCGTGCTGAGCG
ATGAGCTCGTGAGCCGCCCCGGCGGGGTCTTCCTGGGGCTGGTCAAGTAC
AACACCAAGGGCATCCGGCCCACGTTCCTCGGGCAGACGGACGTCGCGGC
GCTGCGCTTCGACTTCCCGCGGCGCGTGCTGAGCCTGTCGCGCGCGCCGC
TCATACCGCGCGCGTGCGCCGACGCCGTCCCCCTCGTCGACCTGCGCCCG
CTCGGCGACCCCGTGCAGCACTACGCGGCGCGCGCCGCGGCGGTCACGAC
CAAGCAGCGCGCGCTGCACCCGCCGCCGCCGCCGCCAGCGCACGGCGCCG
CCGCCGCCAAGGACGTCTACGTCATCTTCGACACGGGGACGACGGGGCTC
GCCGTGTCGCGCGCGCTGTGGGACGCGGAGGATGTCTACGCGCGCGTCAA
TGGCGGGCGCCCCTTTCGCGACGTCGCCGTGACGCTCGCGACGGAGGGCG
GCGGTGCGGTGACGCTGTGCGCGCGCCGCCCGCTCACGACGCCACTCGAC
CTGCCGTGGCGCGGCTTCAACGAGCGCGCACACCTCCTCGTCATCGGCCT
CGACTTCATGTCGAGCGTCGTGCTGACCATCGACGTCGATGACCGCCGCC
TGCTGTGGCAGCAGCTGCCGGACGCGGATGTGTGA
back to top