mRNA_12053 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YGZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ6_9STRA) HSP 1 Score: 320 bits (820), Expect = 3.650e-109 Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 1
Query: 1 MDDGAQAHAALTFEAQVARMMLSFPDDASIQFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAAXXXXXXAANTSSE 540
MDDGAQAHAALTFEAQVARMMLSFPDDASIQFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAAXXXXX AANTSSE
Sbjct: 1 MDDGAQAHAALTFEAQVARMMLSFPDDASIQFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAAXXXXXGAANTSSE 180
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YQI2_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI2_9STRA) HSP 1 Score: 159 bits (401), Expect = 3.850e-43 Identity = 105/167 (62.87%), Postives = 113/167 (67.66%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAAXXXXXXAANTSSE*GPWRNNQRW-QAM*HT 588
QFL+AGAGNALM ALAAST A S LK L ALA G+AAQLLAAGVAEAIMAAVDKHC RG +LSAD KCT V+SAAM AIAALAASAPADSARLST GACEVV AVRLH D QE D+T + LA WR +QRW Q + HT
Sbjct: 243 QFLDAGAGNALMNALAASTASGATSDTLKALAALAQYGGSAAQLLAAGVAEAIMAAVDKHCVRGGVLSADFKCTLVISAAMSAIAALAASAPADSARLSTVGACEVVARAVRLHMDAQEFDQT-----FGIGSTLA-----------------WRRSQRWPQLVSHT 387
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YYM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM8_9STRA) HSP 1 Score: 139 bits (351), Expect = 6.220e-36 Identity = 87/138 (63.04%), Postives = 97/138 (70.29%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQES-DETCWYWEYSRLEALAA 501
QFL+AGAG ALMEALAAST AA H L L AL H G+AA LAAGVAEAIMAAVD+ CTRG SADS+C WVL AAM AIAALA APADSAR GAC+ VV AV+L + ++T W W + LEALAA
Sbjct: 133 QFLDAGAGEALMEALAASTAHGAARHTLIALAALVHHGGSAAHFLAAGVAEAIMAAVDRLCTRGGTFSADSECVWVLLAAM-AIAALATKAPADSARFYAAGACDAVVRAVQLFKEYHHRRNDTSWLWHHPGLEALAA 269
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YIU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU1_9STRA) HSP 1 Score: 127 bits (319), Expect = 4.590e-33 Identity = 90/139 (64.75%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 10 GAQAHAALTFEAQVARMMLSFPDDASI--QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTA 420
G QA AAL R S A+I QF++AGAGNALM+ALAAS AAS LK L ALA G+AAQLLAAGVAEAIMAAVDKHCTRGRMLSAD VL A+ AIAALAASAPADSARLS GAC VV++
Sbjct: 50 GLQAAAALAIRNMTER---SDAGGAAIAQQFVDAGAGNALMDALAASAIRGAASDTLKALAALARYGGSAAQLLAAGVAEAIMAAVDKHCTRGRMLSADYDGKQVLEPALSAIAALAASAPADSARLSMAGACNAVVSS 185
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835Z8E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E0_9STRA) HSP 1 Score: 124 bits (311), Expect = 4.440e-30 Identity = 80/137 (58.39%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAA 501
QFL+AG G L+EAL AST A LK LTALAH G+AAQL++A A AIMAAV K CTRG LSA C VLSAAM AIAALA APA+SAR GAC+ VV AV+L DV + W+W++ LEALAA
Sbjct: 128 QFLDAGVGEVLIEALTASTAHGTARFTLKALTALAHHGGSAAQLMSAVAAAAIMAAVGKLCTRGGTLSAVFVCLSVLSAAMWAIAALATKAPAESARFYAAGACQAVVRAVQLFKDVHR--RSSWFWQHPGLEALAA 262
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH98_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.280e-19 Identity = 69/117 (58.97%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKC-TWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTD 438
Q L A AGNALMEALA +T AA+ +L L ALA +AAQ LAAG AEAIMAAV KH L + C T V SAAM AIAALAASAPADSARL GACE VT V ++ +
Sbjct: 64 QLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVN 180
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YNT0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.680e-19 Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 127 EALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKC--TWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVR 426
EA+AAS+ AA+H L LTAL H G+AAQLLAAG AEAIMAAV + CTRGR LS + VLSAAM AIAALA APADSARLS GAC+V V A++
Sbjct: 257 EAVAASSPYGAAAHTLNALTALVHHGGSAAQLLAAGGAEAIMAAVGRLCTRGRALSPVVQFGRARVLSAAMKAIAALATKAPADSARLSAAGACQVAVNALK 358
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YPZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.170e-18 Identity = 69/147 (46.94%), Postives = 72/147 (48.98%), Query Frame = 1
Query: 1 MDDGAQAHAALTFEAQVARMMLSFPDDASIQ-------------------------------------------------------------FLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAA 258
MDDGAQ HAALTFEAQV+RMM SFPDDASIQ FL+AGAG AL EALAAST G A S LK LTALAH AAQLLAAGVAEAI+AA
Sbjct: 1 MDDGAQVHAALTFEAQVSRMMRSFPDDASIQVWGTHAIRAQIWDDVNNIEFKDRLGQAGACAALDLQAAAASAIESMAERNNGAGAAAIAQQFLDAGAGEALKEALAASTIGGATSDTLKALTALAHYGAGAAQLLAAGVAEAIVAA 147
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835Z6I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.750e-18 Identity = 69/137 (50.36%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCTRGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAA 501
QFL+A AGNALMEALAASTTG AA +ML+ LTALA G+AAQLLAAG AE IMAA+ K +LA APADSARLS GACE VV A++ SD+ L ALAA
Sbjct: 64 QFLDADAGNALMEALAASTTGGAAPYMLQALTALADYRGSAAQLLAAGAAETIMAAIAKL-------------------------SLATKAPADSARLSAAGACEAVVEALKC----DRSDDRLMALSLKALTALAA 171
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YKL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL3_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-13 Identity = 66/138 (47.83%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 91 QFLNAGAGNALMEALAASTTGYAASHMLKGLTALAHDSGNAAQLLAAGVAEAIMAAVDKHCT-RGRMLSADSKCTWVLSAAMLAIAALAASAPADSARLSTTGACEVVVTAVRLHTDVQESDETCWYWEYSRLEALAA 501
Q L+AGAGNALMEALA ST AA+ +L AG AEAIMA V KHC + R D + T +LSAAM AIAALA SAPADSA GACE VT V H + + + LEALAA
Sbjct: 175 QLLDAGAGNALMEALAVSTRHGAAAFVLLAXXXXXXXXXXXXXXXXAGAAEAIMAPVAKHCRDKPRSPYEDIRRTELLSAAMSAIAALAVSAPADSATPCAAGACEAAVTTVPEHVQILYARDIHRNLLERGLEALAA 312
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YT28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT28_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.440e-31 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 205 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT 369
MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT
Sbjct: 1 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAGSCRVSCQTEGNSDT 55
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.000e-26 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query: 1 MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 159
MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP
Sbjct: 21 MSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 73 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
BLAST of jgi.p|Trimin1|351550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12053 ID=mRNA_12053|Name=jgi.p|Trimin1|351550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=694bp|location=Sequence derived from alignment at Contig_93:341520..343137- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACGATGGGGCGCAGGCGCACGCAGCTTTGACGTTTGAGGCGCAGGTback to top protein sequence of jgi.p|Trimin1|351550 >Trimin1|351550|estExt_Genemark1.C_Ctg_930050 ID=Trimin1|351550|estExt_Genemark1.C_Ctg_930050|Name=jgi.p|Trimin1|351550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp MDDGAQAHAALTFEAQVARMMLSFPDDASIQFLNAGAGNALMEALAASTTback to top mRNA from alignment at Contig_93:341520..343137- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12053 ID=mRNA_12053|Name=jgi.p|Trimin1|351550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1618bp|location=Sequence derived from alignment at Contig_93:341520..343137- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:341520..343137- >mRNA_12053 ID=mRNA_12053|Name=jgi.p|Trimin1|351550|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_93:341520..343137- (Tribonema minus UTEX_B_3156 )back to top |