mRNA_12013 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351527
Unique NamemRNA_12013
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A836C838_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C838_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.270e-93
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR 375
            RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR
Sbjct:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR 125          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A835ZG28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG28_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.160e-53
Identity = 75/125 (60.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR 375
            R+G+  +L  L + EGR LSACNKFGESLAHLACR G    +  I+ +GGSLT+CDDL R+P H   W   P+WD+++ HL+AD  LL+T D RGWTPLRY+KRAN  AWR FLD VKD YWP R
Sbjct:    6 RNGSVQELLRLVEEEGRTLSACNKFGESLAHLACRKGSADVVATILRHGGSLTRCDDLGRVPAHDTCWESRPRWDIVQLHLEADAALLLTRDARGWTPLRYVKRANWAAWRAFLDAVKDRYWPAR 130          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A836CA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA41_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.740e-32
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGG--SLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 369
            R  +   LR L   EG  ++ACNKF ESL H+A R+G+ A ++ +I+  G   LT CDD  R PLH A WA  P +D++   LD D ++L+  D RG+TPL Y+KR   GAW  F+D VKD YWP
Sbjct:   13 RQADLDALRML-HAEGHGMNACNKFAESLVHMAGRSGNCAVMEFLIDCTGPEGLTICDDYGRTPLHDACWATEPCFDLVSFILDHDSSMLMVVDRRGYTPLSYVKRDQWGAWHAFIDAVKDKYWP 136          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A6H5JAC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.040e-25
Identity = 62/183 (33.88%), Postives = 83/183 (45.36%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLD------------------------------------------------------------ADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 369
            R+G+   L+  A + GR + ACNKFGES+ H+ACR G+L  L  ++ NGGSLT CDDL R PLH   WA  P++D++R  L+                                                             D  +L+ TD RG +PLRY+K  +  AWR FLD V D +WP
Sbjct:  187 RTGDMEGLQR-AVNAGRRMDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEVCWAAQPRFDIVRVFLEHERETNXXXXXXXXXXXXXXXATTVSGAXXXXSDGESTXXXXXXXXXXXXXXXXXXXNIVVDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWP 368          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.750e-25
Identity = 53/126 (42.06%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRC-LSACNKFGESLAHLACRNGDLATLKVIIENGG--SLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 369
            R+G+   LR +  H   C ++ACNKF ES+ H+A R G    ++ +IE  G  SL   DD  R PLH A W   P +D++   LD +  +L+  D RG+TPL Y+K+   GAW  F+D +KD YWP
Sbjct:   50 RAGDLDTLREM--HAAGCSMNACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVEMLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYWP 173          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.230e-24
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   43 EGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR 375
            EGR ++ACNK+GES+ H+ACR GD   +  ++E GG L   DD  R PLH A W   P  DV+   L+ +  LL   D RG++PL Y++R ++  W  F D +KD +W  R
Sbjct:  342 EGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWWSPR 452          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: D8LCH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.240e-23
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   46 GRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 369
            GR + ACNKFGES+ H+ACR G+L  L  ++ NGGSLT CDDL R PLH                             RG +PLRY+K  +  AWR FLD V D +WP
Sbjct:   28 GRRMDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHE----------------------------RGCSPLRYVKEESWPAWRQFLDEVVDEFWP 107          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A836CH78_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH78_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.350e-23
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 369
            R+ + + LR + +  GRC+SACN+FGES+ H A R G  A +  ++E+G     CDD  R  LH A W   P++DV+   ++AD  LL   D RG  PL+Y +  +   W  F    K  YWP
Sbjct:    6 RADDVAALRAM-RDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 127          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.400e-22
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   46 GRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYW 366
            G  ++ACNKFGES+ H+ACR G+   L+ ++ +G +L+  DD  R P+H A W   P +DV+   L+ D  LL   D RG TPL Y++  ++  W  FLD  KD +W
Sbjct:  193 GHHVNACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299          
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Match: A0A7S1XYJ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYJ1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.290e-21
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWPRR 375
            R G+  ++    + +GR  + CN+FGES+ H+A RNG    ++V++++G S+   DD+ R PLH A W       + R  L AD  L+   D RG TPL Y+       W+ FL  + D  WP R
Sbjct:  147 REGDVREVEKFLKEQGRSANTCNRFGESILHMAARNGHTDVVEVLLKHGASVWAVDDMNRTPLHDACWNPMSDLQIPRMLLSADPELIRARDQRGNTPLGYVNLDKEETWKCFLVSMVDICWPVR 271          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351527 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C838_9STRA2.270e-93100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZG28_9STRA3.160e-5360.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CA41_9STRA8.740e-3247.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JAC0_9PHAE1.040e-2533.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZH90_9STRA2.750e-2542.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RMJ8_9STRA9.230e-2443.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LCH5_ECTSI3.240e-2344.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH78_9STRA7.350e-2339.02Ankyrin repeat-containing domain protein (Fragment... [more]
A0A7S2DD81_9STRA8.400e-2242.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XYJ1_9STRA2.290e-2136.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_93contigContig_93:27889..28717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351527|estExt_Genemark1.C_Ctg_930007
Descriptionankyrin repeats
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C0FJ@1|root,2S48R@2759|Eukaryota
Evalue4.82e-22
Seed ortholog2880.D7FYR4
Hectar predicted targeting categoryother localisation
TranscriptId351849
TrackFilteredModels1
ProteinId351527
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351527gene_12013Tribonema minus UTEX_B_3156 geneContig_93 27889..28717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351527Trimin1|351527|estExt_Genemark1.C_Ctg_930007Tribonema minus UTEX_B_3156 polypeptideContig_93 27889..28717 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12013_2exon_12013_2Tribonema minus UTEX_B_3156 exonContig_93 27889..28104 -
exon_12013_1exon_12013_1Tribonema minus UTEX_B_3156 exonContig_93 28556..28717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12013CDS_12013Tribonema minus UTEX_B_3156 CDSContig_93 28556..28717 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12013 ID=mRNA_12013|Name=jgi.p|Trimin1|351527|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_93:27889..28717- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGAAGTGGCAACGCTTCCAAGTTACGACATCTCGCGCAACACGAAGGACG
GTGCCTCTCCGCGTGCAACAAGTTTGGAGAGAGCCTCGCCCACCTGGCCT
GCCGCAACGGCGACCTTGCGACATTGAAAGTCATAATTGAAAACGGCGGC
AGCCTAACTCAGTGCGACGACCTGCAGCGGCTGCCGCTGCACTGGGCGGC
GTGGGCGGACGCGCCGCAGTGGGACGTCATCCGCGCGCACCTCGACGCCG
ACGACACGCTGCTCGTCACCACGGACCTGCGCGGCTGGACGCCGCTGCGC
TACATAAAGCGCGCCAACCACGGCGCGTGGCGCGACTTTCTGGACGGCGT
GAAGGACCACTACTGGCCGCGCCGCTGA
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protein sequence of jgi.p|Trimin1|351527

>Trimin1|351527|estExt_Genemark1.C_Ctg_930007 ID=Trimin1|351527|estExt_Genemark1.C_Ctg_930007|Name=jgi.p|Trimin1|351527|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
RSGNASKLRHLAQHEGRCLSACNKFGESLAHLACRNGDLATLKVIIENGG
SLTQCDDLQRLPLHWAAWADAPQWDVIRAHLDADDTLLVTTDLRGWTPLR
YIKRANHGAWRDFLDGVKDHYWPRR*
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mRNA from alignment at Contig_93:27889..28717-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12013 ID=mRNA_12013|Name=jgi.p|Trimin1|351527|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=829bp|location=Sequence derived from alignment at Contig_93:27889..28717- (Tribonema minus UTEX_B_3156 )
CGAAGTGGCAACGCTTCCAAGTTACGACATCTCGCGCAACACGAAGGACG GTGCCTCTCCGCGTGCAACAAGTTTGGAGAGAGCCTCGCCCACCTGGCCT GCCGCAACGGCGACCTTGCGACATTGAAAGTCATAATTGAAAACGGCGGC AGCCTAACTCAGGTGTGTACCAGAAACTGAGCTGTCGTGTTGTGCTGGAC AAATTTAAACTGTGCTTGATCACCACTGCACCCTACAGCCACGCTCGGGC CACCACTCTTTGTATACCTGACACTCTGGGTGCCAAATTTGCAGTTGTGC TGATGTCGCAGCTCACAGCGGCAGCCGTCGACAGGTGTGGCCCACCTCTC TGGTCTGATGGGCAAAGACTCATCCGTCCATCAGCAAACCGAGTGCTGCT GAGCGCAAACACCCCATTTGCCACTGCGCTGCAGTGCGATGCCCTGCAGC GGCTGCCGCTGCACTGGGCGGCGTGGGCGGACATGCCGCATTTGGACATA CACTTGAAGTCTACACCTGCAGCATTTCTCTCCGTGCATGTGGTAGTACA TACAACTTCTCCTACCCTCAATTCTAACGCCCTCCCTCCCCACACGCGCG CAACCCCCCGCAGTGCGACGACCTGCAGCGGCTGCCGCTGCACTGGGCGG CGTGGGCGGACGCGCCGCAGTGGGACGTCATCCGCGCGCACCTCGACGCC GACGACACGCTGCTCGTCACCACGGACCTGCGCGGCTGGACGCCGCTGCG CTACATAAAGCGCGCCAACCACGGCGCGTGGCGCGACTTTCTGGACGGCG TGAAGGACCACTACTGGCCGCGCCGCTGA
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Coding sequence (CDS) from alignment at Contig_93:27889..28717-

>mRNA_12013 ID=mRNA_12013|Name=jgi.p|Trimin1|351527|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_93:27889..28717- (Tribonema minus UTEX_B_3156 )
CGAAGTGGCAACGCTTCCAAGTTACGACATCTCGCGCAACACGAAGGACG
GTGCCTCTCCGCGTGCAACAAGTTTGGAGAGAGCCTCGCCCACCTGGCCT
GCCGCAACGGCGACCTTGCGACATTGAAAGTCATAATTGAAAACGGCGGC
AGCCTAACTCAGTGCGACGACCTGCAGCGGCTGCCGCTGCACTGGGCGGC
GTGGGCGGACGCGCCGCAGTGGGACGTCATCCGCGCGCACCTCGACGCCG
ACGACACGCTGCTCGTCACCACGGACCTGCGCGGCTGGACGCCGCTGCGC
TACATAAAGCGCGCCAACCACGGCGCGTGGCGCGACTTTCTGGACGGCGT
GAAGGACCACTACTGGCCGCGCCGCTGA
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