mRNA_12054 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338847
Unique NamemRNA_12054
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH98_9STRA)

HSP 1 Score: 509 bits (1311), Expect = 4.330e-180
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 3
Query:   45 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 962
            MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE
Sbjct:    1 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 306          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YKL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL3_9STRA)

HSP 1 Score: 343 bits (880), Expect = 3.920e-113
Identity = 220/307 (71.66%), Postives = 233/307 (75.90%), Query Frame = 3
Query:   12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRL 932
            VPRQALYALGAMAVRPNEPA  TL  RRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHN        QQLL A AGNALMEALAV+TR GAAA VLLA                AGAAEAIMA VAKH R KPR PYEDI RTE+ SAAMSAIAALA SAPADSA  CAAGACEAAVTTVP +V  LYA   + +LL++GL+ALAALASAAESHS  VALSLVQA ACEAATAALN+VL P  ++  LTSA+RTIC L ADA AAARL AA     V SAIPRCSNCP      Q  L+RL
Sbjct:  101 VPRQALYALGAMAVRPNEPADATLLLRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNNNGGAAIAQQLLDAGAGNALMEALAVSTRHGAAAFVLLAXXXXXXXXXXXXXXXXAGAAEAIMAPVAKHCRDKPRSPYEDIRRTELLSAAMSAIAALAVSAPADSATPCAAGACEAAVTTVPEHVQILYARDIHRNLLERGLEALAALASAAESHSPVVALSLVQARACEAATAALNLVLTPCGNDATLTSAMRTICALCADASAAARLSAAGARESVISAIPRCSNCP----IVQTQLERL 403          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YYM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM8_9STRA)

HSP 1 Score: 249 bits (637), Expect = 6.610e-77
Identity = 184/321 (57.32%), Postives = 215/321 (66.98%), Query Frame = 3
Query:   12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXX-QQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDK-GLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL--PPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 962
            VP+QALYAL  +AV    PA +TL  + HAAQ+ QA+VAAMR D+T QDLQAAAA+A+E I + N         QQ L A AG ALMEALA +T  GAA   L+ALAAL  HG SAA FLAAG AEAIMAAV +          +  C   V  AAM AIAALA  APADSAR  AAGAC+A V  V ++    +  +    L    GL+ALAALA+AAE+HSQ +ALSLV+AGACEAAT  LN VL  P  SS K LT+ L+ IC LSADA AAARL  A     V +AIPRCSN  DAA++A+LALDRLAAGAA+ SSE
Sbjct:   58 VPKQALYALYTLAVPCLGPADITLPQQLHAAQIAQAVVAAMRTDITQQDLQAAAASAVEGITQRNTGGVGAAIAQQFLDAGAGEALMEALAASTAHGAARHTLIALAALVHHGGSAAHFLAAGVAEAIMAAVDRLCTRGGTFSADSEC-VWVLLAAM-AIAALATKAPADSARFYAAGACDAVVRAVQLFKEYHHRRNDTSWLWHHPGLEALAALAAAAEAHSQDMALSLVEAGACEAATTFLNAVLLIPALSSSKALTTVLQAICALSADASAAARLNTAGAHKAVANAIPRCSNHSDAAQSARLALDRLAAGAADASSE 376          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835Z8E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 5.880e-73
Identity = 187/329 (56.84%), Postives = 213/329 (64.74%), Query Frame = 3
Query:   18 RQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXX-QQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL-PPWSSE--KMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAA-RAAQLALDRLAAGAANVSSE*GSQRRKQQ 989
            RQALYALGAM V    PA VTL  + HAAQ  QA+ AAMR D+T QDLQ AAA+AIE I ++N         QQ L A  G  L+EAL  +T  G A   L AL ALA HG SAAQ ++A AA AIMAAV K       L    +C + V SAAM AIAALA  APA+SAR  AAGAC+A V  V ++ +     S +      GL+ALAALA+AAE+HSQ +ALSLVQAGACE ATA LN VL  P S    +MLTSAL+ IC LSADA AAARL AA     V SAIPRC    DAA RAAQLAL RLAAGAAN +SE GS R K +
Sbjct:   55 RQALYALGAMVVCRYPPADVTLPQKLHAAQAAQAVAAAMRTDITQQDLQTAAASAIEGITQNNNGGVGAAIAQQFLDAGVGEVLIEALTASTAHGTARFTLKALTALAHHGGSAAQLMSAVAAAAIMAAVGKLCTRGGTLSAVFVCLS-VLSAAMWAIAALATKAPAESARFYAAGACQAVVRAVQLFKDVHRRSSWFWQ--HPGLEALAALAAAAEAHSQDMALSLVQAGACEVATAVLNAVLLVPLSDAGYRMLTSALQAICTLSADASAAARLSAAGAREAVASAIPRCREGDDAAARAAQLALHRLAAGAANAASERGSWRSKHR 380          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YNT0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.450e-52
Identity = 143/232 (61.64%), Postives = 157/232 (67.67%), Query Frame = 3
Query:  270 EALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKH-RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL-PPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSS 959
            EA+A ++  GAAA  L AL AL  HG SAAQ LAAG AEAIMAAV +   RG+   P     R  V SAAM AIAALA  APADSARL AAGAC+ AV  +       Y  S  C LLD  L+ LAAL +AA SHS AVALSLV AGACEAATA LN VL  P  S  +LTSALR ICGLSADA AAARL  A     V SAIPRCSN  DAA++A+LALDRLA GAA+ SS
Sbjct:  257 EAVAASSPYGAAAHTLNALTALVHHGGSAAQLLAAGGAEAIMAAVGRLCTRGRALSPVVQFGRARVLSAAMKAIAALATKAPADSARLSAAGACQVAVNALK------YNISDDC-LLDLSLKTLAALVTAAVSHSPAVALSLVTAGACEAATATLNAVLLSPSGSSNVLTSALRAICGLSADASAAARLNTAGAREAVASAIPRCSNHDDAAQSARLALDRLAVGAADASS 481          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835Z6I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.360e-48
Identity = 134/255 (52.55%), Postives = 154/255 (60.39%), Query Frame = 3
Query:   45 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCD-----LLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL--PPWSSEKMLTSALR 788
            MAVR   P  +TL  R HAAQV QA+VAAMR ++T QDLQAAAA+AIER+ E +        QQ L A AGNALMEALA +T  GAA  +L AL ALA +  SAAQ LAAGAAE IMAA+AK                           +LA  APADSARL AAGACEA V  +             CD     L+   L+AL ALA+AAESHS AVALSLV+AGACEAATA LN VL  P  SS K++T  +R
Sbjct:    1 MAVRGYGPPDITLPQRLHAAQVAQAVVAAMRTEITQQDLQAAAASAIERMTERHNGNGATIAQQFLDADAGNALMEALAASTTGGAAPYMLQALTALADYRGSAAQLLAAGAAETIMAAIAK--------------------------LSLATKAPADSARLSAAGACEAVVEALK------------CDRSDDRLMALSLKALTALAAAAESHSSAVALSLVEAGACEAATATLNAVLLLPASSSSKVMTQRIR 217          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YIU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.460e-39
Identity = 110/184 (59.78%), Postives = 124/184 (67.39%), Query Frame = 3
Query:   18 RQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKH-RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTT 566
            RQALYAL AMAV   EPA  TL  R +AAQV QA+VAAMR DVT   LQAAAA AI  + E +        QQ + A AGNALM+ALA +   GAA+  L ALAALA +G SAAQ LAAG AEAIMAAV KH  RG  R+   D    +V   A+SAIAALAASAPADSARL  AGAC A V++
Sbjct:    4 RQALYALAAMAVPCFEPADATLPQRLNAAQVAQAVVAAMRTDVTQAGLQAAAALAIRNMTERSDAGGAAIAQQFVDAGAGNALMDALAASAIRGAASDTLKALAALARYGGSAAQLLAAGVAEAIMAAVDKHCTRG--RMLSADYDGKQVLEPALSAIAALAASAPADSARLSMAGACNAVVSS 185          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YQI2_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.120e-39
Identity = 112/191 (58.64%), Postives = 126/191 (65.97%), Query Frame = 3
Query:   12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVN 584
            VP QAL AL AMAV    P  +TL  R HAAQV QA+VAAMR DVT + LQ+AAATAIE + E +        QQ L A AGNALM ALA +T  GA +  L ALAALA +G SAAQ LAAG AEAIMAAV KH      L  +  C T V SAAMSAIAALAASAPADSARL   GACE     V ++++
Sbjct:  169 VPHQALSALSAMAVCRFGPVDITLPQRLHAAQVAQAVVAAMRTDVTLEGLQSAAATAIESMTESSDGGGAAVAQQFLDAGAGNALMNALAASTASGATSDTLKALAALAQYGGSAAQLLAAGVAEAIMAAVDKHCVRGGVLSADFKC-TLVISAAMSAIAALAASAPADSARLSTVGACEVVARAVRLHMD 358          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835ZGT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.520e-23
Identity = 117/261 (44.83%), Postives = 150/261 (57.47%), Query Frame = 3
Query:   21 QALYALGAM--AVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDG-AAAPVLLALAALASHGVSAA--QFLAAGAAEAIMAAVAKH----RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCD-----LLDKGLQALAALASAAE-----SHSQAVALSLVQAGACEAATAALNMVL 746
            QAL AL A+  A R ++ AA+ L  R HAA V +AIVAA+R+DVT   LQ     A+  + +          QQLL A AG+ L++ LA +T     AA  L ALA LA +G  AA  + LAAGA EAIMAAVAKH      G  R       R  V  +A SA+AALAA +PA+ AR CAAGA  AAV  V + ++   A  Q  D     L D GL+A+ ALA+A +     S   + +++LV+AGA EAATAALN +L
Sbjct:   24 QALRALRAVVAANRGSQIAALQLWERLHAAHVSEAIVAALRVDVTQPGLQMVGTGAVSTLAQ--CLGGTPAVQQLLDAGAGDVLIKVLAASTAAYICAAATLSALAMLARNGGGAASERLLAAGADEAIMAAVAKHCEIEEGGTAR-------RAHVLWSAASAVAALAAHSPANGARFCAAGAAAAAVRAVQLSLDAQEA--QQLDGTAHLLRDFGLEAIGALAAAGDAARSGSEPGSESVALVEAGAREAATAALNALL 273          
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YHV7_9STRA (PD-XK nuclease superfamily-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHV7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.020e-18
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = -2
Query:   66 QRLHECIACSRAKKLLCDGGTAIVVVLHYPLNCRRSSGLQVLVSDVNAHGSNDRLHHLRCMTPVRQGDGCW 278
            Q  HECIAC+R ++LL +GG A  VVL  P +C RS+GLQ LVS V+AHGSNDRLH+LRCM   RQGD CW
Sbjct:  232 QAPHECIACARFQELLRNGGAATDVVLRDPRDCLRSTGLQGLVSCVSAHGSNDRLHNLRCMMLQRQGDVCW 302          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835YH98_9STRA4.330e-180100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKL3_9STRA3.920e-11371.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYM8_9STRA6.610e-7757.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8E0_9STRA5.880e-7356.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNT0_9STRA1.450e-5261.64Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A835Z6I2_9STRA3.360e-4852.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIU1_9STRA2.460e-3959.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQI2_9STRA6.120e-3958.64Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A835ZGT2_9STRA7.520e-2344.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHV7_9STRA6.020e-1864.79PD-XK nuclease superfamily-domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_93contigContig_93:344183..345211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338847|MIX47610_12_49
Hectar predicted targeting categoryother localisation
TranscriptId339169
TrackFilteredModels1
ProteinId338847
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338847gene_12054Tribonema minus UTEX_B_3156 geneContig_93 344183..345211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12054_1exon_12054_1Tribonema minus UTEX_B_3156 exonContig_93 344183..345211 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12054UTR5_12054Tribonema minus UTEX_B_3156 five_prime_UTRContig_93 344183..344226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12054CDS_12054Tribonema minus UTEX_B_3156 CDSContig_93 344227..345147 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12054UTR3_12054Tribonema minus UTEX_B_3156 three_prime_UTRContig_93 345148..345211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338847Trimin1|338847|MIX47610_12_49Tribonema minus UTEX_B_3156 polypeptideContig_93 344227..345147 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACAGCCTGAGTGCCGCGCCAGGCCCTATATGCACTGGGCGCCATGGCT
GTGCGCCCTAACGAGCCAGCAGCCGTCACCTTGTCGCACAGGCGTCATGC
AGCGCAGGTGGTGCAAGCGATCGTTGCTGCCATGCGCATTGACGTCACTC
ACCAGGACCTGCAGGCCGCTGCTGCGACGGCAATTGAGAGGATAATGGAG
CACAACAACAATGGCGGTGCCGCCATCGCACAGCAGCTTCTTGGCGCGGC
TGCAGGCAATGCACTCATGGAGGCGCTGGCAGTGGCCACGAGAGACGGCG
CAGCTGCCCCTGTTCTCCTAGCGTTGGCAGCACTGGCGTCTCATGGCGTC
AGCGCTGCACAGTTCTTGGCAGCGGGCGCCGCGGAGGCCATCATGGCGGC
TGTCGCCAAGCATCGTAGAGGCAAGCCCAGGTTGCCATATGAAGATATTT
GCCGCACTGAGGTGCAGTCGGCTGCGATGTCGGCGATTGCAGCACTTGCG
GCGAGTGCCCCCGCAGACAGCGCCAGGCTCTGTGCTGCGGGCGCCTGTGA
GGCGGCCGTGACGACAGTGCCGGTGTACGTGAACAGACTGTACGCTCATA
GTCAGTACTGCGATTTGCTGGACAAGGGGCTGCAGGCACTAGCAGCACTT
GCCTCAGCAGCTGAGTCACACTCGCAAGCCGTGGCTCTCAGTCTTGTGCA
GGCAGGAGCGTGTGAGGCGGCAACAGCTGCCCTCAATATGGTGCTGCCTC
CTTGGAGCAGCGAAAAAATGTTGACCTCGGCGTTGCGCACGATATGCGGG
CTGAGCGCTGATGCAGGTGCAGCAGCACGGCTCAGAGCCGCAGGCGCCTG
CGAAGCAGTAACTAGTGCCATTCCCAGATGCTCCAATTGTCCAGACGCAG
CTCGAGCGGCTCAGCTGGCTCTAGATCGGCTTGCTGCAGGTGCTGCAAAC
GTGTCAAGCGAATGAGGATCACAGCGCAGGAAGCAACAACGACACGTCTG
TGTCACACGGTAACACGCGCACAGAAGAG
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protein sequence of jgi.p|Trimin1|338847

>Trimin1|338847|MIX47610_12_49 ID=Trimin1|338847|MIX47610_12_49|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=307bp
MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERI
MEHNNNGGAAIAQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASH
GVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAA
LAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALA
ALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTI
CGLSADAGAAARLRAAGACEAVTSAIPRCSNCPDAARAAQLALDRLAAGA
ANVSSE*
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mRNA from alignment at Contig_93:344183..345211+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )
CAACAGCCTGAGTGCCGCGCCAGGCCCTATATGCACTGGGCGCCATGGCT GTGCGCCCTAACGAGCCAGCAGCCGTCACCTTGTCGCACAGGCGTCATGC AGCGCAGGTGGTGCAAGCGATCGTTGCTGCCATGCGCATTGACGTCACTC ACCAGGACCTGCAGGCCGCTGCTGCGACGGCAATTGAGAGGATAATGGAG CACAACAACAATGGCGGTGCCGCCATCGCACAGCAGCTTCTTGGCGCGGC TGCAGGCAATGCACTCATGGAGGCGCTGGCAGTGGCCACGAGAGACGGCG CAGCTGCCCCTGTTCTCCTAGCGTTGGCAGCACTGGCGTCTCATGGCGTC AGCGCTGCACAGTTCTTGGCAGCGGGCGCCGCGGAGGCCATCATGGCGGC TGTCGCCAAGCATCGTAGAGGCAAGCCCAGGTTGCCATATGAAGATATTT GCCGCACTGAGGTGCAGTCGGCTGCGATGTCGGCGATTGCAGCACTTGCG GCGAGTGCCCCCGCAGACAGCGCCAGGCTCTGTGCTGCGGGCGCCTGTGA GGCGGCCGTGACGACAGTGCCGGTGTACGTGAACAGACTGTACGCTCATA GTCAGTACTGCGATTTGCTGGACAAGGGGCTGCAGGCACTAGCAGCACTT GCCTCAGCAGCTGAGTCACACTCGCAAGCCGTGGCTCTCAGTCTTGTGCA GGCAGGAGCGTGTGAGGCGGCAACAGCTGCCCTCAATATGGTGCTGCCTC CTTGGAGCAGCGAAAAAATGTTGACCTCGGCGTTGCGCACGATATGCGGG CTGAGCGCTGATGCAGGTGCAGCAGCACGGCTCAGAGCCGCAGGCGCCTG CGAAGCAGTAACTAGTGCCATTCCCAGATGCTCCAATTGTCCAGACGCAG CTCGAGCGGCTCAGCTGGCTCTAGATCGGCTTGCTGCAGGTGCTGCAAAC GTGTCAAGCGAATGAGGATCACAGCGCAGGAAGCAACAACGACACGTCTG TGTCACACGGTAACACGCGCACAGAAGAG
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Coding sequence (CDS) from alignment at Contig_93:344183..345211+

>mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=921bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )
ATGGCTGTGCGCCCTAACGAGCCAGCAGCCGTCACCTTGTCGCACAGGCG
TCATGCAGCGCAGGTGGTGCAAGCGATCGTTGCTGCCATGCGCATTGACG
TCACTCACCAGGACCTGCAGGCCGCTGCTGCGACGGCAATTGAGAGGATA
ATGGAGCACAACAACAATGGCGGTGCCGCCATCGCACAGCAGCTTCTTGG
CGCGGCTGCAGGCAATGCACTCATGGAGGCGCTGGCAGTGGCCACGAGAG
ACGGCGCAGCTGCCCCTGTTCTCCTAGCGTTGGCAGCACTGGCGTCTCAT
GGCGTCAGCGCTGCACAGTTCTTGGCAGCGGGCGCCGCGGAGGCCATCAT
GGCGGCTGTCGCCAAGCATCGTAGAGGCAAGCCCAGGTTGCCATATGAAG
ATATTTGCCGCACTGAGGTGCAGTCGGCTGCGATGTCGGCGATTGCAGCA
CTTGCGGCGAGTGCCCCCGCAGACAGCGCCAGGCTCTGTGCTGCGGGCGC
CTGTGAGGCGGCCGTGACGACAGTGCCGGTGTACGTGAACAGACTGTACG
CTCATAGTCAGTACTGCGATTTGCTGGACAAGGGGCTGCAGGCACTAGCA
GCACTTGCCTCAGCAGCTGAGTCACACTCGCAAGCCGTGGCTCTCAGTCT
TGTGCAGGCAGGAGCGTGTGAGGCGGCAACAGCTGCCCTCAATATGGTGC
TGCCTCCTTGGAGCAGCGAAAAAATGTTGACCTCGGCGTTGCGCACGATA
TGCGGGCTGAGCGCTGATGCAGGTGCAGCAGCACGGCTCAGAGCCGCAGG
CGCCTGCGAAGCAGTAACTAGTGCCATTCCCAGATGCTCCAATTGTCCAG
ACGCAGCTCGAGCGGCTCAGCTGGCTCTAGATCGGCTTGCTGCAGGTGCT
GCAAACGTGTCAAGCGAATGA
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