mRNA_12054 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH98_9STRA) HSP 1 Score: 509 bits (1311), Expect = 4.330e-180 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 3 Query: 45 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 962 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE Sbjct: 1 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 306
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YKL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL3_9STRA) HSP 1 Score: 343 bits (880), Expect = 3.920e-113 Identity = 220/307 (71.66%), Postives = 233/307 (75.90%), Query Frame = 3 Query: 12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVLPPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRL 932 VPRQALYALGAMAVRPNEPA TL RRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHN QQLL A AGNALMEALAV+TR GAAA VLLA AGAAEAIMA VAKH R KPR PYEDI RTE+ SAAMSAIAALA SAPADSA CAAGACEAAVTTVP +V LYA + +LL++GL+ALAALASAAESHS VALSLVQA ACEAATAALN+VL P ++ LTSA+RTIC L ADA AAARL AA V SAIPRCSNCP Q L+RL Sbjct: 101 VPRQALYALGAMAVRPNEPADATLLLRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNNNGGAAIAQQLLDAGAGNALMEALAVSTRHGAAAFVLLAXXXXXXXXXXXXXXXXAGAAEAIMAPVAKHCRDKPRSPYEDIRRTELLSAAMSAIAALAVSAPADSATPCAAGACEAAVTTVPEHVQILYARDIHRNLLERGLEALAALASAAESHSPVVALSLVQARACEAATAALNLVLTPCGNDATLTSAMRTICALCADASAAARLSAAGARESVISAIPRCSNCP----IVQTQLERL 403
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YYM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM8_9STRA) HSP 1 Score: 249 bits (637), Expect = 6.610e-77 Identity = 184/321 (57.32%), Postives = 215/321 (66.98%), Query Frame = 3 Query: 12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXX-QQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDK-GLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL--PPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSSE 962 VP+QALYAL +AV PA +TL + HAAQ+ QA+VAAMR D+T QDLQAAAA+A+E I + N QQ L A AG ALMEALA +T GAA L+ALAAL HG SAA FLAAG AEAIMAAV + + C V AAM AIAALA APADSAR AAGAC+A V V ++ + + L GL+ALAALA+AAE+HSQ +ALSLV+AGACEAAT LN VL P SS K LT+ L+ IC LSADA AAARL A V +AIPRCSN DAA++A+LALDRLAAGAA+ SSE Sbjct: 58 VPKQALYALYTLAVPCLGPADITLPQQLHAAQIAQAVVAAMRTDITQQDLQAAAASAVEGITQRNTGGVGAAIAQQFLDAGAGEALMEALAASTAHGAARHTLIALAALVHHGGSAAHFLAAGVAEAIMAAVDRLCTRGGTFSADSEC-VWVLLAAM-AIAALATKAPADSARFYAAGACDAVVRAVQLFKEYHHRRNDTSWLWHHPGLEALAALAAAAEAHSQDMALSLVEAGACEAATTFLNAVLLIPALSSSKALTTVLQAICALSADASAAARLNTAGAHKAVANAIPRCSNHSDAAQSARLALDRLAAGAADASSE 376
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835Z8E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E0_9STRA) HSP 1 Score: 239 bits (611), Expect = 5.880e-73 Identity = 187/329 (56.84%), Postives = 213/329 (64.74%), Query Frame = 3 Query: 18 RQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXX-QQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL-PPWSSE--KMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAA-RAAQLALDRLAAGAANVSSE*GSQRRKQQ 989 RQALYALGAM V PA VTL + HAAQ QA+ AAMR D+T QDLQ AAA+AIE I ++N QQ L A G L+EAL +T G A L AL ALA HG SAAQ ++A AA AIMAAV K L +C + V SAAM AIAALA APA+SAR AAGAC+A V V ++ + S + GL+ALAALA+AAE+HSQ +ALSLVQAGACE ATA LN VL P S +MLTSAL+ IC LSADA AAARL AA V SAIPRC DAA RAAQLAL RLAAGAAN +SE GS R K + Sbjct: 55 RQALYALGAMVVCRYPPADVTLPQKLHAAQAAQAVAAAMRTDITQQDLQTAAASAIEGITQNNNGGVGAAIAQQFLDAGVGEVLIEALTASTAHGTARFTLKALTALAHHGGSAAQLMSAVAAAAIMAAVGKLCTRGGTLSAVFVCLS-VLSAAMWAIAALATKAPAESARFYAAGACQAVVRAVQLFKDVHRRSSWFWQ--HPGLEALAALAAAAEAHSQDMALSLVQAGACEVATAVLNAVLLVPLSDAGYRMLTSALQAICTLSADASAAARLSAAGAREAVASAIPRCREGDDAAARAAQLALHRLAAGAANAASERGSWRSKHR 380
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YNT0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT0_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.450e-52 Identity = 143/232 (61.64%), Postives = 157/232 (67.67%), Query Frame = 3 Query: 270 EALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKH-RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCDLLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL-PPWSSEKMLTSALRTICGLSADAGAAARLRAAXXXXXVTSAIPRCSNCPDAARAAQLALDRLAAGAANVSS 959 EA+A ++ GAAA L AL AL HG SAAQ LAAG AEAIMAAV + RG+ P R V SAAM AIAALA APADSARL AAGAC+ AV + Y S C LLD L+ LAAL +AA SHS AVALSLV AGACEAATA LN VL P S +LTSALR ICGLSADA AAARL A V SAIPRCSN DAA++A+LALDRLA GAA+ SS Sbjct: 257 EAVAASSPYGAAAHTLNALTALVHHGGSAAQLLAAGGAEAIMAAVGRLCTRGRALSPVVQFGRARVLSAAMKAIAALATKAPADSARLSAAGACQVAVNALK------YNISDDC-LLDLSLKTLAALVTAAVSHSPAVALSLVTAGACEAATATLNAVLLSPSGSSNVLTSALRAICGLSADASAAARLNTAGAREAVASAIPRCSNHDDAAQSARLALDRLAVGAADASS 481
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835Z6I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I2_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.360e-48 Identity = 134/255 (52.55%), Postives = 154/255 (60.39%), Query Frame = 3 Query: 45 MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCD-----LLDKGLQALAALASAAESHSQAVALSLVQAGACEAATAALNMVL--PPWSSEKMLTSALR 788 MAVR P +TL R HAAQV QA+VAAMR ++T QDLQAAAA+AIER+ E + QQ L A AGNALMEALA +T GAA +L AL ALA + SAAQ LAAGAAE IMAA+AK +LA APADSARL AAGACEA V + CD L+ L+AL ALA+AAESHS AVALSLV+AGACEAATA LN VL P SS K++T +R Sbjct: 1 MAVRGYGPPDITLPQRLHAAQVAQAVVAAMRTEITQQDLQAAAASAIERMTERHNGNGATIAQQFLDADAGNALMEALAASTTGGAAPYMLQALTALADYRGSAAQLLAAGAAETIMAAIAK--------------------------LSLATKAPADSARLSAAGACEAVVEALK------------CDRSDDRLMALSLKALTALAAAAESHSSAVALSLVEAGACEAATATLNAVLLLPASSSSKVMTQRIR 217
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YIU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU1_9STRA) HSP 1 Score: 147 bits (370), Expect = 2.460e-39 Identity = 110/184 (59.78%), Postives = 124/184 (67.39%), Query Frame = 3 Query: 18 RQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKH-RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTT 566 RQALYAL AMAV EPA TL R +AAQV QA+VAAMR DVT LQAAAA AI + E + QQ + A AGNALM+ALA + GAA+ L ALAALA +G SAAQ LAAG AEAIMAAV KH RG R+ D +V A+SAIAALAASAPADSARL AGAC A V++ Sbjct: 4 RQALYALAAMAVPCFEPADATLPQRLNAAQVAQAVVAAMRTDVTQAGLQAAAALAIRNMTERSDAGGAAIAQQFVDAGAGNALMDALAASAIRGAASDTLKALAALARYGGSAAQLLAAGVAEAIMAAVDKHCTRG--RMLSADYDGKQVLEPALSAIAALAASAPADSARLSMAGACNAVVSS 185
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YQI2_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI2_9STRA) HSP 1 Score: 151 bits (382), Expect = 6.120e-39 Identity = 112/191 (58.64%), Postives = 126/191 (65.97%), Query Frame = 3 Query: 12 VPRQALYALGAMAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDGAAAPVLLALAALASHGVSAAQFLAAGAAEAIMAAVAKHRRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVN 584 VP QAL AL AMAV P +TL R HAAQV QA+VAAMR DVT + LQ+AAATAIE + E + QQ L A AGNALM ALA +T GA + L ALAALA +G SAAQ LAAG AEAIMAAV KH L + C T V SAAMSAIAALAASAPADSARL GACE V ++++ Sbjct: 169 VPHQALSALSAMAVCRFGPVDITLPQRLHAAQVAQAVVAAMRTDVTLEGLQSAAATAIESMTESSDGGGAAVAQQFLDAGAGNALMNALAASTASGATSDTLKALAALAQYGGSAAQLLAAGVAEAIMAAVDKHCVRGGVLSADFKC-TLVISAAMSAIAALAASAPADSARLSTVGACEVVARAVRLHMD 358
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835ZGT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT2_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.520e-23 Identity = 117/261 (44.83%), Postives = 150/261 (57.47%), Query Frame = 3 Query: 21 QALYALGAM--AVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIMEHNXXXXXXXXQQLLGAAAGNALMEALAVATRDG-AAAPVLLALAALASHGVSAA--QFLAAGAAEAIMAAVAKH----RRGKPRLPYEDICRTEVQSAAMSAIAALAASAPADSARLCAAGACEAAVTTVPVYVNRLYAHSQYCD-----LLDKGLQALAALASAAE-----SHSQAVALSLVQAGACEAATAALNMVL 746 QAL AL A+ A R ++ AA+ L R HAA V +AIVAA+R+DVT LQ A+ + + QQLL A AG+ L++ LA +T AA L ALA LA +G AA + LAAGA EAIMAAVAKH G R R V +A SA+AALAA +PA+ AR CAAGA AAV V + ++ A Q D L D GL+A+ ALA+A + S + +++LV+AGA EAATAALN +L Sbjct: 24 QALRALRAVVAANRGSQIAALQLWERLHAAHVSEAIVAALRVDVTQPGLQMVGTGAVSTLAQ--CLGGTPAVQQLLDAGAGDVLIKVLAASTAAYICAAATLSALAMLARNGGGAASERLLAAGADEAIMAAVAKHCEIEEGGTAR-------RAHVLWSAASAVAALAAHSPANGARFCAAGAAAAAVRAVQLSLDAQEA--QQLDGTAHLLRDFGLEAIGALAAAGDAARSGSEPGSESVALVEAGAREAATAALNALL 273
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Match: A0A835YHV7_9STRA (PD-XK nuclease superfamily-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHV7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 6.020e-18 Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = -2 Query: 66 QRLHECIACSRAKKLLCDGGTAIVVVLHYPLNCRRSSGLQVLVSDVNAHGSNDRLHHLRCMTPVRQGDGCW 278 Q HECIAC+R ++LL +GG A VVL P +C RS+GLQ LVS V+AHGSNDRLH+LRCM RQGD CW Sbjct: 232 QAPHECIACARFQELLRNGGAATDVVLRDPRDCLRSTGLQGLVSCVSAHGSNDRLHNLRCMMLQRQGDVCW 302 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338847 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAACAGCCTGAGTGCCGCGCCAGGCCCTATATGCACTGGGCGCCATGGCTback to top protein sequence of jgi.p|Trimin1|338847 >Trimin1|338847|MIX47610_12_49 ID=Trimin1|338847|MIX47610_12_49|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=307bp MAVRPNEPAAVTLSHRRHAAQVVQAIVAAMRIDVTHQDLQAAAATAIERIback to top mRNA from alignment at Contig_93:344183..345211+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:344183..345211+ >mRNA_12054 ID=mRNA_12054|Name=jgi.p|Trimin1|338847|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=921bp|location=Sequence derived from alignment at Contig_93:344183..345211+ (Tribonema minus UTEX_B_3156 )back to top |