mRNA_11290 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352360
Unique NamemRNA_11290
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A835ZCX1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX1_9STRA)

HSP 1 Score: 1330 bits (3442), Expect = 0.000e+0
Identity = 720/720 (100.00%), Postives = 720/720 (100.00%), Query Frame = 3 
Query:  246 MWCDKAPLDGALRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTSIDDYPGHNSEGIKGRLRSFYINRYVTCSRLWDLLDVTGFVIVEGPPESGKTALLQLLSAFLQRELGVKPIYASCALLDEARGHDIHAALVAACGATLRELRAAQVPCTVLLDEAQHLYEETDSNRTFWSHIKMLMRGSCVRIALFAAYGDRSSNRPPTYPGMPVSIMPDVMVGNFPAQGGKVSLSLSQQEWHDLFERFADATGLQLEKRLRDYIFWLCAGQVGLLTFCLDYLVNEIVNDLRISSKVNGNAMLVFTSPLHKLCYMSKRFSGQTLSPFGTFTPSFKPDVRQLAIQLIERMDPFFLRETLNVDFNSNCRLLRCWQVEMYRALMQALPEGIAPAPDAEEALGPDGFMEFFVGNPYNAGLEIVRDSILAEDHYRRYLEGSNHWSMAMGVVIKEFLLIDLISPGKFDGRPPTSQEAYPNLLSVVVAADYKSAVVWHKGSMIQEVQMAGNADEACKLALQAIKNAAA 2405
            MWCDKAPLDGALRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTSIDDYPGHNSEGIKGRLRSFYINRYVTCSRLWDLLDVTGFVIVEGPPESGKTALLQLLSAFLQRELGVKPIYASCALLDEARGHDIHAALVAACGATLRELRAAQVPCTVLLDEAQHLYEETDSNRTFWSHIKMLMRGSCVRIALFAAYGDRSSNRPPTYPGMPVSIMPDVMVGNFPAQGGKVSLSLSQQEWHDLFERFADATGLQLEKRLRDYIFWLCAGQVGLLTFCLDYLVNEIVNDLRISSKVNGNAMLVFTSPLHKLCYMSKRFSGQTLSPFGTFTPSFKPDVRQLAIQLIERMDPFFLRETLNVDFNSNCRLLRCWQVEMYRALMQALPEGIAPAPDAEEALGPDGFMEFFVGNPYNAGLEIVRDSILAEDHYRRYLEGSNHWSMAMGVVIKEFLLIDLISPGKFDGRPPTSQEAYPNLLSVVVAADYKSAVVWHKGSMIQEVQMAGNADEACKLALQAIKNAAA
Sbjct:    1 MWCDKAPLDGALRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTSIDDYPGHNSEGIKGRLRSFYINRYVTCSRLWDLLDVTGFVIVEGPPESGKTALLQLLSAFLQRELGVKPIYASCALLDEARGHDIHAALVAACGATLRELRAAQVPCTVLLDEAQHLYEETDSNRTFWSHIKMLMRGSCVRIALFAAYGDRSSNRPPTYPGMPVSIMPDVMVGNFPAQGGKVSLSLSQQEWHDLFERFADATGLQLEKRLRDYIFWLCAGQVGLLTFCLDYLVNEIVNDLRISSKVNGNAMLVFTSPLHKLCYMSKRFSGQTLSPFGTFTPSFKPDVRQLAIQLIERMDPFFLRETLNVDFNSNCRLLRCWQVEMYRALMQALPEGIAPAPDAEEALGPDGFMEFFVGNPYNAGLEIVRDSILAEDHYRRYLEGSNHWSMAMGVVIKEFLLIDLISPGKFDGRPPTSQEAYPNLLSVVVAADYKSAVVWHKGSMIQEVQMAGNADEACKLALQAIKNAAA 720
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A835YR60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR60_9STRA)

HSP 1 Score: 351 bits (901), Expect = 7.730e-112
Identity = 235/241 (97.51%), Postives = 238/241 (98.76%), Query Frame = 3 
Query:  273 GALRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            G LRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:    7 GPLRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 247
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A836CIN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN4_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.080e-86
Identity = 209/216 (96.76%), Postives = 212/216 (98.15%), Query Frame = 3 
Query:  348 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:  138 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 353
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A836CMV7_9STRA (Soluble NSF attachment protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV7_9STRA)

HSP 1 Score: 298 bits (763), Expect = 4.060e-86
Identity = 210/218 (96.33%), Postives = 214/218 (98.17%), Query Frame = 3 
Query:  342 REDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            +EDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGD RDTSRRRQQASARVLAQLRSQRASGAMAWMS PPA NDRPGAAPMS++S
Sbjct:  326 QEDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDLRDTSRRRQQASARVLAQLRSQRASGAMAWMSAPPAANDRPGAAPMSTSS 543
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A836CIR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR8_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.490e-85
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 3 
Query:  348 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGD RDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:  384 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDLRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 599
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A836CL34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL34_9STRA)

HSP 1 Score: 301 bits (770), Expect = 8.840e-85
Identity = 200/219 (91.32%), Postives = 205/219 (93.61%), Query Frame = 3 
Query:  339 IREDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            +REDQGLPPIIEAVRRSTRAL ADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAA           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCL+EDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:    1 MREDQGLPPIIEAVRRSTRALAADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAATAATVPGPQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLLEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 219
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A835YI57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI57_9STRA)

HSP 1 Score: 298 bits (762), Expect = 6.630e-84
Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 3 
Query:  345 EDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            +DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGD RDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:  459 KDQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDLRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 675
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A835ZAI2_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI2_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.570e-81
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 3 
Query:  348 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGD RDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:  616 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDLRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 831
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A835YYK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK6_9STRA)

HSP 1 Score: 269 bits (687), Expect = 2.150e-76
Identity = 200/240 (83.33%), Postives = 201/240 (83.75%), Query Frame = 3 
Query:  348 DQGLPPIIEAVRRSTRALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR---------------------------QDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMS 986
            DQGLPPIIEAVRRSTRALTADG EKSRTAVAEQLP SLLRWAADTTAAASTLPTAVQAIYAATAV ET TTEPAPHTHGIVPGAEAA XXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXDWEAYADEICR                           +DCLVEDLEAASAGAVGKPTQA  IGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPP  NDRPGAAPMS
Sbjct:  263 DQGLPPIIEAVRRSTRALTADGSEKSRTAVAEQLPASLLRWAADTTAAASTLPTAVQAIYAATAVMETVTTEPAPHTHGIVPGAEAAAXXXXXXXXXXXXXXXXXXXAKTXXXXXXXXXXXXXXXXXXDWEAYADEICRKLVPRRRRGHFTHGLQAGLSNVLRRQYEDCLVEDLEAASAGAVGKPTQAAPIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPTANDRPGAAPMS 502
[Close]
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Match: A0A836CDF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.420e-62
Identity = 168/174 (96.55%), Postives = 171/174 (98.28%), Query Frame = 3 
Query:  474 ADTTAAASTLPTAVQAIYAATAVTETGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGDSRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS 995
            ADTTAAASTLPTAVQAIYAATAVTE GTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICR+DCLVEDLEAASAGAVGKPTQATLIGD RDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPA NDRPGAAPMS++S
Sbjct:    5 ADTTAAASTLPTAVQAIYAATAVTEAGTTEPAPHTHGIVPGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWEAYADEICRKDCLVEDLEAASAGAVGKPTQATLIGDLRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAANDRPGAAPMSTSS 178
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352360 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCX1_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YR60_9STRA7.730e-11297.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIN4_9STRA2.080e-8696.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMV7_9STRA4.060e-8696.33Soluble NSF attachment protein n=1 Tax=Tribonema m... [more]
A0A836CIR8_9STRA1.490e-8597.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CL34_9STRA8.840e-8591.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI57_9STRA6.630e-8496.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAI2_9STRA1.570e-8197.22C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835YYK6_9STRA2.150e-7683.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF5_9STRA3.420e-6296.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:278709..289290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352360|estExt_Genemark1.C_Ctg_1160049
Max annot lvl33090|Viridiplantae
EggNOG OGs2CF1P@1|root,2S68H@2759|Eukaryota,381KE@33090|Viridiplantae
Evalue1.35e-42
Seed ortholog248742.XP_005642859.1
Hectar predicted targeting categoryother localisation
TranscriptId352682
TrackFilteredModels1
ProteinId352360
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352360gene_11290Tribonema minus UTEX_B_3156 geneContig_116 278709..289290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352360Trimin1|352360|estExt_Genemark1.C_Ctg_1160049Tribonema minus UTEX_B_3156 polypeptideContig_116 278954..289201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11290_1exon_11290_1Tribonema minus UTEX_B_3156 exonContig_116 278709..278981 +
exon_11290_2exon_11290_2Tribonema minus UTEX_B_3156 exonContig_116 279915..280408 +
exon_11290_3exon_11290_3Tribonema minus UTEX_B_3156 exonContig_116 280490..280709 +
exon_11290_4exon_11290_4Tribonema minus UTEX_B_3156 exonContig_116 283486..283800 +
exon_11290_5exon_11290_5Tribonema minus UTEX_B_3156 exonContig_116 284329..284684 +
exon_11290_6exon_11290_6Tribonema minus UTEX_B_3156 exonContig_116 285289..285377 +
exon_11290_7exon_11290_7Tribonema minus UTEX_B_3156 exonContig_116 287622..287904 +
exon_11290_8exon_11290_8Tribonema minus UTEX_B_3156 exonContig_116 288824..289290 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11290UTR5_11290Tribonema minus UTEX_B_3156 five_prime_UTRContig_116 278709..278953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11290CDS_11290Tribonema minus UTEX_B_3156 CDSContig_116 278954..278981 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11290UTR3_11290Tribonema minus UTEX_B_3156 three_prime_UTRContig_116 289202..289290 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11290 ID=mRNA_11290|Name=jgi.p|Trimin1|352360|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2497bp|location=Sequence derived from alignment at Contig_116:278709..289290+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGTGCGCCACAGTCAACTGCACAGTTTTGCAAGCAAGGCAGCGACG
TGCGCTGTGACACATTCAGACTCAGGGATGCGTTGCGCGCTGCACAGCCT
TATGAAAAGACGTGCTCAGGACCCCTCTTGGCACTGCAGGTAGCATGCAG
TAGTGCATGCCACGCCCCAGTGCTGCTGAGAACTGCCACAGTCTCTGCAC
AACAAACATTACGCTCGGCTCATACGCATAGCGCGGTGGCCGCGCATGTG
GTGCGACAAAGCACCTCTGGATGGGGCCCTGAGGCTCGGCACTGACGAAC
ACGGCGCAGTCACCTGGTTCGCGCAGCACTCATGCGCAATACGCGAGGAC
CAGGGACTGCCGCCAATCATCGAGGCCGTGCGACGCTCTACGCGAGCGCT
GACAGCTGATGGCGGCGAAAAATCACGCACAGCTGTGGCCGAGCAGCTCC
CAGAATCGTTGCTACGGTGGGCAGCAGATACGACGGCCGCAGCGTCGACG
CTCCCCACTGCGGTGCAAGCGATCTACGCCGCAACTGCCGTCACGGAGAC
GGGGACCACTGAGCCAGCCCCACACACCCACGGCATTGTGCCTGGCGCCG
AGGCGGCCGCTGCGGCGGCGACCGTACCTGGCCCTCAAGCCGCTGCCGCG
GCTGCCTCTTCCACGCGCGCTAAAACACAAACTAGCGCGGAAGAAAGCAG
CTGCAGCGGCGGGCAGGAGGACGACGACGACGACTGGGAGGCCTATGCTG
ACGAGATCTGCAGGCAGGACTGCCTGGTGGAGGACCTAGAGGCTGCCTCG
GCTGGTGCCGTGGGCAAGCCGACGCAGGCTACACTTATTGGTGACTCGCG
TGACACCAGCCGCCGCCGCCAACAGGCTAGCGCGCGGGTCCTGGCGCAGC
TGCGCAGCCAGCGTGCGTCCGGGGCAATGGCGTGGATGAGCGTGCCACCC
GCTGTCAATGACCGCCCGGGTGCGGCGCCCATGTCCAGCACCTCCATCGA
TGACTACCCTGGCCACAACTCGGAGGGCATCAAAGGGCGGCTCCGCTCCT
TCTACATCAATCGCTACGTCACGTGTAGCCGGCTCTGGGACCTGCTGGAC
GTCACGGGGTTTGTCATAGTCGAAGGCCCTCCTGAGTCGGGCAAAACAGC
GCTGTTGCAGCTGCTCAGCGCCTTCCTCCAGAGGGAGCTGGGCGTCAAGC
CCATCTACGCGTCGTGCGCCCTCTTGGACGAGGCTCGAGGCCATGACATT
CACGCCGCGCTTGTGGCAGCTTGCGGTGCCACGTTACGCGAGCTGCGGGC
GGCGCAAGTCCCCTGCACCGTCTTGCTGGACGAGGCACAGCACCTCTACG
AAGAAACCGACAGCAACCGCACGTTCTGGTCTCACATCAAGATGCTCATG
CGAGGCAGCTGCGTCCGCATCGCGCTCTTTGCTGCCTACGGCGACCGAAG
CAGCAACCGCCCGCCCACCTACCCTGGTATGCCGGTGTCCATAATGCCCG
ACGTGATGGTCGGCAACTTTCCTGCACAGGGCGGCAAGGTCAGCTTGAGC
CTGTCCCAGCAGGAGTGGCACGACCTGTTTGAGAGGTTCGCCGACGCGAC
AGGCTTGCAGCTGGAGAAGCGGCTGCGAGACTACATTTTCTGGCTGTGTG
CTGGCCAGGTGGGCCTTCTCACCTTCTGCCTGGACTACCTAGTCAATGAG
ATCGTCAACGACTTGCGCATTTCCTCTAAAGTCAATGGCAATGCCATGCT
GGTCTTCACGAGCCCGCTGCACAAGCTCTGCTACATGTCGAAGCGCTTCA
GCGGCCAGACTCTGAGTCCATTTGGGACATTCACTCCAAGTTTCAAGCCA
GACGTGCGTCAACTTGCAATCCAGCTCATTGAGAGGATGGACCCTTTCTT
TCTTCGAGAAACTCTGAACGTGGACTTCAACAGCAACTGCCGCCTGCTGC
GTTGCTGGCAAGTGGAGATGTACAGGGCGCTGATGCAGGCGCTGCCTGAG
GGAATCGCCCCCGCACCGGATGCTGAGGAGGCTCTGGGGCCGGACGGCTT
CATGGAGTTCTTCGTGGGCAACCCCTACAATGCGGGGCTGGAGATCGTGC
GGGACAGCATCCTGGCTGAAGACCACTACAGGCGCTACCTCGAAGGCAGC
AACCACTGGTCCATGGCAATGGGTGTGGTGATAAAGGAATTTCTCTTGAT
TGACCTCATCAGCCCGGGGAAGTTCGATGGCAGGCCTCCCACATCTCAAG
AAGCGTACCCAAACCTGCTGTCTGTGGTGGTGGCTGCGGACTACAAGAGT
GCTGTGGTGTGGCACAAGGGCTCAATGATTCAAGAGGTGCAGATGGCAGG
CAATGCTGACGAGGCTTGCAAGCTGGCGCTGCAGGCCATCAAGAATGCTG
CAGCTTGAAGTGAGAGCTAACGCATCAGTCGTCGCCAGAGTGAGTGTGAG
CATTAAATGTTGCCAGAGTGAGTGTGAGCCAAAGTAGGCATCAGTTG
back to top

protein sequence of jgi.p|Trimin1|352360

>Trimin1|352360|estExt_Genemark1.C_Ctg_1160049 ID=Trimin1|352360|estExt_Genemark1.C_Ctg_1160049|Name=jgi.p|Trimin1|352360|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=721bp
MWCDKAPLDGALRLGTDEHGAVTWFAQHSCAIREDQGLPPIIEAVRRSTR
ALTADGGEKSRTAVAEQLPESLLRWAADTTAAASTLPTAVQAIYAATAVT
ETGTTEPAPHTHGIVPGAEAAAAAATVPGPQAAAAAASSTRAKTQTSAEE
SSCSGGQEDDDDDWEAYADEICRQDCLVEDLEAASAGAVGKPTQATLIGD
SRDTSRRRQQASARVLAQLRSQRASGAMAWMSVPPAVNDRPGAAPMSSTS
IDDYPGHNSEGIKGRLRSFYINRYVTCSRLWDLLDVTGFVIVEGPPESGK
TALLQLLSAFLQRELGVKPIYASCALLDEARGHDIHAALVAACGATLREL
RAAQVPCTVLLDEAQHLYEETDSNRTFWSHIKMLMRGSCVRIALFAAYGD
RSSNRPPTYPGMPVSIMPDVMVGNFPAQGGKVSLSLSQQEWHDLFERFAD
ATGLQLEKRLRDYIFWLCAGQVGLLTFCLDYLVNEIVNDLRISSKVNGNA
MLVFTSPLHKLCYMSKRFSGQTLSPFGTFTPSFKPDVRQLAIQLIERMDP
FFLRETLNVDFNSNCRLLRCWQVEMYRALMQALPEGIAPAPDAEEALGPD
GFMEFFVGNPYNAGLEIVRDSILAEDHYRRYLEGSNHWSMAMGVVIKEFL
LIDLISPGKFDGRPPTSQEAYPNLLSVVVAADYKSAVVWHKGSMIQEVQM
AGNADEACKLALQAIKNAAA*
back to top

mRNA from alignment at Contig_116:278709..289290+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11290 ID=mRNA_11290|Name=jgi.p|Trimin1|352360|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10582bp|location=Sequence derived from alignment at Contig_116:278709..289290+ (Tribonema minus UTEX_B_3156 )
CAGCAGTGCGCCACAGTCAACTGCACAGTTTTGCAAGCAAGGCAGCGACG
TGCGCTGTGACACATTCAGACTCAGGGATGCGTTGCGCGCTGCACAGCCT
TATGAAAAGACGTGCTCAGGACCCCTCTTGGCACTGCAGGTAGCATGCAG
TAGTGCATGCCACGCCCCAGTGCTGCTGAGAACTGCCACAGTCTCTGCAC
AACAAACATTACGCTCGGCTCATACGCATAGCGCGGTGGCCGCGCATGTG
GTGCGACAAAGCACCTCTGGATGGTAAGTAATGTATGAACATGCAGTGGT
GCTGTGCAGCGCGTGCAGCAGTACATAGTAAAGCACACAGCCACGGCAGA
GAACACATTGTGTTTCATTCATACAGGCCTTGAGAAAAGGCCGGCTGCAC
GTTGGCATGCATGGCCACCGAATCGTACGCAGCAACTCCAGCTGCAGGAA
ATAAGAACTCGTCTTTCCACACCGTCCTTGCCTTCTCTGTGCTGCCTCGA
CTCCTCCCTGGTATGATGATGCAATGTCAACGAGCCAACGACATTATGCA
TACGACAGTTACGGGGTTTGTTCAGAACTGGGCAGTGGACAACACCTACC
AATGCCCCATTTAAGGAACAGGAATGAACGCGCAAAACAGTTGTCCAAAG
CGTGCACACCATGCTGTTGCTGTTTCAGACAAGCTCCATTTCTTGCGTTG
AGTGACCGTTGAGTAGCAGCGACGTCTCGGGCCCTGAAATACTAGATACA
ATTGGCGGTGTCGTTTAAAAGTGTCAGTCAATGCGCATTAAGGAGGAGCA
AGAAGCAGTGCATGTGGACTTGACAACTGTTCCGCAGCAAATGCTGTCAC
CTGCACTGATGCCGTGTCGCCTTCACAATACGCTTCTCTACTCTACAGTG
CCCCTGTTATGCCAGCCCCGTCTTTTCTAAGCTAATCGCTGCAGCAATTG
CATAACATGCATATATTGTGGATGGCTGACGTCAAACAAGTAGTTAGCCA
ATGAACACCCAGTAGTGCTGAAGTATTGCCGCGCTTGGGCCCGCCAGAAC
TCACGGACATCGCAGTGCCACTGCGGGCGTCACGGTTGCCGGAGCGATGA
GGCGGTCTGGGCATGCCGCTTTTGGGGCTACTGGCACCAGCCGCATACAC
GGCCCAGGCATGCACAACACTGCGGCCTGCAATAATTCATGCCACTGTGG
CAGCAGGGGCCCTGAGGCTCGGCACTGACGAACACGGCGCAGTCACCTGG
TTCGCGCAGCACTCATGCGCAATACGCGAGGACCAGGGACTGCCGCCAAT
CATCGAGGCCGTGCGACGCTCTACGCGAGCGCTGACAGCTGATGGCGGCG
AAAAATCACGCACAGCTGTGGCCGAGCAGCTCCCAGAATCGTTGCTACGG
TGGGCAGCAGATACGACGGCCGCAGCGTCGACGCTCCCCACTGCGGTGCA
AGCGATCTACGCCGCAACTGCCGTCACGGAGACGGGGACCACTGAGCCAG
CCCCACACACCCACGGCATTGTGCCTGGCGCCGAGGCGGCCGCTGCGGCG
GCGACCGTACCTGGCCCTCAAGCCGCTGCCGCGGCTGCCTCTTCCACGCG
CGCTAAAACACAAACTAGCGCGGAAGAAAGCAGCTGCAGCGGCGGGCAGG
AGGACGACGACGACGACTGGGAGGCCTATGCTGACGAGATCTGCAGGCAG
GTAGTGCCCCGCCGCCGGCGCGGTCACTTCACGCACGGACTACAAGCCGG
CCTTTCAAATGTTCTTCGACGTCAATACGAGGACTGCCTGGTGGAGGACC
TAGAGGCTGCCTCGGCTGGTGCCGTGGGCAAGCCGACGCAGGCTACACTT
ATTGGTGACTCGCGTGACACCAGCCGCCGCCGCCAACAGGCTAGCGCGCG
GGTCCTGGCGCAGCTGCGCAGCCAGCGTGCGTCCGGGGCAATGGCGTGGA
TGAGCGTGCCACCCGCTGTCAATGACCGCCCGGGTGCGGCGCCCATGTCC
AGTATGGCAGCAGCCACGATGATTTTGGTTGCGATCTTTATAGACGGGTG
GGGCATACAGGGCGAGGTGTGCCCATGGCGGTGCAGTGACGTGAGCCCCA
CCTCCACGCATGCGATCAGCTGCCCAAGCCAGCACATACGGGGGCACAAC
GCGACACACACTGCCCAAAAGCGGTGCCTACAGCGCATCTTGAGACAGCA
CCATGTCTCTATTGTCAATGAGGACGCTAGCGTCTTCAAGGTACCGGGGT
ATCGGGCGGACACAGTCAATTGACCCAGGGTGTCTGCACTTTAGCAGTGC
GTACCGTAACAAGGGAATAGTGCTAGACACAAGTGTGCGCGCGCCCACAG
CGAGCTCATACCTGACAGGCAAAACAAATGCCTCGAACACGGACGGCTAT
GCTGCTGGGGTGGGGGAGGACGCGAAGGTCAAGCACCACACCGGCACCTT
GACGTCATCCTGGGCTTTTGTGCCATTCGTGCAGGAGTCGTACGGACGGC
TGGGCAAGCAGACAAGCCTTTTTGTTAAGGAGTTGGCAATGCACTCAGCA
CTGTGCTCAGGGGGAGGGAAGGCAGATGTGTTACGCAAGGCCGGGTTAGC
GAAGCGTCAGATCCACATTGAGCTGAGCATATCGCTGGCGCGGGAGTTGG
CGGAGCGCGTCATGGCATACACACGTGGAGCGCGAATGCTGGGCTGTGTT
GCGGCGCCGGTATCCAAACTCCTAGGGCACAGCGCAGACTAGGCTGCTGC
GTTGACGCAAGCTTTTCGATTGCATAGGCAACCCGGCCTCCCTTGGGCCT
TTATAAATACAAGTCCATACGTGCTGAGGGCTGCCTTGCACAACAGCCTG
CAGCGCATGGTCTACAACAAATTGTCAAGATAGAATGCTTTGCTATAGCC
TGTGCCCAGTACAAGAGTCTACAAGTAGTGGTTGACATTGTGACACTTTC
AGACTGTCACATGACATGTAGATTCCGTACAGCAAGCTTAGATACCATTC
ATCTGCACTTTTTCGCGCCCTGAGCTAGAATTTAAAAAACAAAGAAAAGA
ACGAGTCCATCATGTTGCCTCAATGCCTCAACTGTTGTTGGGTTTGTGCG
CTGCATGAGTCCCCATCATGCTGCGTGCTTGAAAACAGCTAGCCACTGCC
TATTCCCTGGATGTTTGTTCGGGGGGGGGGGGGGCACATGGACTCGGACG
TAGGGGTGGATCTTGAGATGCAATTTGGCGGCGTTGTTTGAGTGGTTGTC
ATTCGTCGAGTGGTTGTCATTGAGACACCTTCATACTGTCACATGACATG
TAGATTCCGTGCAGCAAGCTTAGATACCATTCACCCGGGCTGTTTCGCGC
CCTGTGCGAGAATTAACATTAACGGTACATCATAATGCCTCAACCGTTGT
AAGGTTTGTGCACTGCATGAGACCCCATCAGCGTGCTTGAAAACAGCTAG
CCACTGCCTATTCCCTGCGTCTTTGTTCGCTGCCTGAGGGACGAAATGGC
AGCCACGTACACGAAGAAACAATTGCGAAGGACGCACAAGGATGTAAGCT
AGGCTGAGGCCACCGTGCTGCAAGATGCTCGCTCGGGCTGATCAATAATG
GCAGATATTAGGTGATAGATGGCGGTTGAGGACACATTGAGCATGTTGTG
CTGAAAAGTATCAAGGACATTTGGGGCGCTCTGCAGTCAGCGACGCCGAA
GCATACGCTGCTCAAAAGCTTCGCCGGCACTCGAGGATGGTGAATGGCGA
TCAAATGTTTGACATGACTCTAGATGGAACACGTACTAGTGAAGGTGCAA
CAGACCAAAGTGTGCCCTTTTGGGTGACTGGGTGCTGCAGCGCTGCAGAG
TCCGCCCCTTCCGCATAAGTGCCCGATATCGTGCACAATTTTCAAGGGCC
TGGTGCGCTGGCGCACCGAACAACCATGAAGCACCATGAACTTCAATTTA
GTTTATTCTAGTTTTATTCTGCATGAGCCGGTTTGTGTGAGCAAGAATCG
TGAACGAGGCGGGCTGCTGTCCTAGCTTTTGGCTGTGGCGGGTCATGCAA
CCCACTGATTCAGCCACTGATTCAGCCACCGCCGCTGCGTCCGTTGGCCG
TGAGCCCACATGCGAGAGGTAGGGGCCCCGGGCTCTGAATAAGTTTTAGT
CTTGAACTGCAGCCGCTCGGTTTCTGCAGCTGTTTTCCGCAGCGACCGCT
AGATAACCTTCATCACCAGTGTCTCTTGCCTCTGCTTTCCGCAGTGACGC
GACAGGTGCCGCAGTCTCAACAACTGCTGATGGCGGCGATGACCAGAGGG
TGGCTGCAGCGAGGCAGCTTGCAGCGAGGCAGCGTGCTGGTGAGGAAGTT
ATTCCAGCGTCGCTTGCCGTGTCTTTAGCACTTTATCGAACCAAGCCCTT
GTGAAATCATTTTTACAGATCATGTTTCTTCGCGGATTGTTGAGCATACC
TGCTCTTGCCTAAAATGCAGAGACAGTTTAGGGTTAGCAACATGGTTTTT
CGCAGCACCATCTGACAATCATTGCACCATCTGACCATGCCGCTGTCAGG
TGTGATTGTTGCTGACTCCACGACTTTCGATTTGGCTGATTTGAGGTGCT
TCTGTGATATTCCAACACATTGCATCAAAATAGTCGGACCATCGATCGTG
CTCTTTGCCTGAGCAGAGTGAAGGTGCCTGCAACTTTAATTTACCCAATC
GTTTCAGGGTCTTGTGCATTATTTCCGCTTCAGTTGTGCATGCACCCACA
TTCGCATGCGCAATTGCTCCCTGACAGGCACCTCCATCGATGACTACCCT
GGCCACAACTCGGAGGGCATCAAAGGGCGGCTCCGCTCCTTCTACATCAA
TCGCTACGTCACGTGTAGCCGGCTCTGGGACCTGCTGGACGTCACGGGGT
TTGTCATAGTCGAAGGCCCTCCTGAGTCGGGCAAAACAGCGCTGTTGCAG
CTGCTCAGCGCCTTCCTCCAGAGGGAGCTGGGCGTCAAGCCCATCTACGC
GTCGTGCGCCCTCTTGGACGAGGCTCGAGGCCATGACATTCACGCCGCGC
TTGTGGCAGCTTGCGGTGCCACGTTACGCGAGCTGCGGGCGGGTAAGCTC
CGAGTCCATCGATACAGCCACCATGATGCATTTTTGTTACCAGCAGGCCT
GGTGAACCGCGCTGCCTCGCCCGTGCATTTCGGGAACGCGCAATGCCTTT
TGCTGTAGCTGCAGTGGAATCTGGGTAGGTCCGCTTCATTTTTTACCAGA
AAAATGGCAAAACACTCTAGGCTTCCATTGCAGCCTAAGTGCAAGTCGCC
ACGTATTTCAGACATAGATAAAACCACATCCACTTTTACGAAACACAGAT
CCATGAGCGCTCACTTGTAAGTTAAGGGTTTATGAGGGTGTGACATGGTT
CATGCATTGACTCCCATATGCCTCGTATTGGCAAGGTTCCTCCTGCCAGC
GAGTGACCATTGTGAGAGCACTGCTGGAGACAGTTCTTACTCATCTCGTT
GTGGACAGGGCATGATTGAAATCATTTGTGATAGTCCACCCTTCGCTGCT
GCTGTATGGCCTGTGTCCTCTCTAACGGTGCAACCGTCCGACGCCGCTGC
TGCACTGCGCGCGTCCGCAGCGCAAGTCCCCTGCACCGTCTTGCTGGACG
AGGCACAGCACCTCTACGAAGAAACCGACAGCAACCGCACGTTCTGGTCT
CACATCAAGATGCTCATGCGAGGCAGCTGCGTCCGCATCGCGCTCTTTGC
TGCCTACGGCGACCGAAGCAGCAACCGCCCGCCCACCTACCCTGGTATGC
CGGTGTCCATAATGCCCGACGTGATGGTCGGCAACTTTCCTGCACAGGGC
GGCAAGGTCAGCTTGAGCCTGTCCCAGCAGGAGTGGCACGACCTGTTTGA
GAGGTTCGCCGACGCGACAGGCTTGCAGCTGGAGAAGCGGCTGCGAGACT
ACATTTTCTGGCTGTGTGCTGGCCAGGTGAGGATTTCTGTATGATTTCCA
CTAATGCGCCCATTGATGGAAATCACAATGTATATAAAACACATAGAAGT
ATACCCCCCCCCCCGCCTTGCAGCGTATACAATGTAGCCACCTAGGTAGG
CTTTATGAGTTGTTAGCCACAGGAGCAGGCAGGAGGCTGAGGCTGGCCAT
GCTTGCACATGACACAACATCATGCTGTGCACAGGCACCAGTGTGGCAGC
CCTAAATTCATTTTTCAATTTGCATTGACATGTACCTTCTGTCAGTGTAG
GCACGTGTAGCTATAACATGACATGTGTGCTCACAGCAGCAGCCCCACGT
GCGGCCGACGGGTAGTGCTTACACAGGCGACATCATTCATGCTCGCAGTA
TGAAGAGCCCAAGATTATCGTTTCACTATGCTGTTTCATCTTTTTTTTTG
AACTGGCTTTCTCATGAACTCATTATTGATAGCTCTTGTTTAAAATTTGG
ATTTGTCCCTATTAATTTTTGGGTTCATTGCAAATTTCTTTATGCTGACG
GCGTACCTCCTAAGCCGATATGATTTTCTGCTTGCGACTTCAAGTTGGCT
CACCCTCTTTCAATCGCTCATGCTGCGCAGGTGGGCCTTCTCACCTTCTG
CCTGGACTACCTAGTCAATGAGATCGTCAACGACTTGCGCATTTCCTCTA
AAGTCAATGGCAATGCCATGTAAGTTTATTGCCAGAAAACTAACGATCGC
CAGATACAAGGCCACGATGCAACCAATGCCTCGCCGATGTGCAAGGTTCA
ATTTACAGCTACTGCCACAAAGTACATGTACTGCTGATGCAGGGTTTCCA
GCGCAGTCATGGCTGCACTGTTTTTTAAGATCAGACAGTCGTGTGCAATA
ATTATATCGCATGTTAGCACTCGACTGGTGTAATAAGACACAGTCAGCGG
TGTCATATTTGCAGCAAAGAATGGGGGTTTACCGCTCCATGCCTTCAGCA
ACTTCAACCTTCAGATGTGGCAATGCTACTCAGTGCTTCACCAGCATTAA
GCACTTGTAAAGTATTGAAACGATGCCAGAGTGCTGATATCACCTGGACA
GTTACGGCCTGTAGCATTGGAGCTCTAGGTGCAGTTTGCTGTTTCCTTCC
CTTACTCAGAGGCTCCAGCACGTACATCAACCCACACTTCGTGCAGAAGT
GCAGCAGTTGTCATATGCAGCTGCATGCGCACACGCAACGGCTTTGCAGT
TTGCAAAATGTCAGTACCTCAATTGAGGTACACCATTCCACGAATCGCGG
CGAATTGATCGGCATGTTATGGTTCTACTTAAAGATTGCATTGAAGCATA
TTGATAGCAATTCAAGACCTATCTGCATTTTTCATCCTCAGCAGCGGCAA
CCACGCCAGTTCTTGCACGTTGCTGCACGTCGCATGTTGCAGTTTTGGGA
GGGCCATGAATTTCTGAGCTTCCTTTTTTTAAAAAAGAAACTGTTTCTCC
TACACCCTTGAGGTTTTTGCTGCTGGAGTTATTCTAAAGAGCATAAACCT
GATGTAATGAAAGCCGTGCAATTTCATGCACTAGGGTCGAGGCGCGAGAC
TGCTTCTGCCACTGGCACTAGGACTCACATCACAAGCTCCAACAGACAAC
GGTGTCAGTTCTAGTCCCGGGCACACATTGGCTCGGCTATGTGTGCTGGT
GTGATGTAGGTACCCTCGGTACATGTACATGTCTGGATACCGGATGCATG
TGCAGCTTCATGAACAGTGGCGCCGTATATAGCCTGCCATTGCTCTTGCC
CAACTTGAATGCTGCCATCACTGATCCAAGATCGTGGCACCTCAAGCTGA
TGTGCAGAAATTTGAAATCAAAAGTGTGCATTGGAAACAATTGTATTTGC
GCCCTCAGCAATAATGATAAAGCCACGAAGCCCCCAGCACTGTGGCACCT
ACTGTAAAGGTTTTCTTTCTTTGTGTGCCAGTGGCTGGGTATGGCTGCGC
TTCTGTCCATCCCGTCTAGGCAGCCGCTTGCACAATCTGAAGTTTGAGCA
TTGTTAATGCAAAATTCGACTTTGGTGTTGCAGGTACAAGCTGAGTTCAC
CGAGGTTCATCAGAATCTGCGGCACAGGGCGAAGGTTTGGCAAATATAAT
GATCTCAAATTAGCCACTGATCCAGTGGCAGAGGGCCTTCTTGGTCAGCT
GCTCTACACAGGTGCACTGCCGGCACCAACATTTTGGCAAGAGGACAACG
ACCCAGAGATGAAAGCTAGGCATCGCCTACAGGCTGCTGGCATAGCCATA
TCGGATCATGACGACAGGTAAACATATTGATTGAGTTCCACGAAGTACTA
CGTAGTAAGTATGAATCTTGTTGTAGCTGCCAAAAAGATTTTTCCAGCGC
TTTCTCGCCTTACTTTGTAGTTCAAGGTCAATTCAATTTCAAGTTGGTGC
AGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTATTCTAGCCGCGAAT
GAAACACCAATTTCAAATTGTCACGTGTAGACCCTCATGGTATGCCATGC
AGCTTAGCGTATATCCAGCCATGCCTGGCATTGTTGCGTCTGCTGTATGA
TGCTCGTCCGAGGAGCACACAGAGGGAAAGCGTGAAAGCCATACGCATAA
ACATCAGGGGCCCATATATTTTAGTTCTTGGGCTCACGGCTTCTACCTGG
TCTGCCGAAGCCGATAAAAATCTCCAAAATAGGTTGCGGACATCTACTGT
CTGCGCATTCAAGCACCCCCCCCCCCTTTCAAGACTTCGGAAGCTCCCTC
CGCATTTTAAAATTTTGAGCGTGACATTGCGTCCATGTCGTGCCCATCAT
TACCATTAGTAGTGTGCACACTCCGTGGAGACACTGCAGTGCATGACCGC
CTACTGCTCACTACTTGTGTGTGTGCCATTGCATCATTCGACGACTTCTC
TCACGCCTCACAGGCTGGTCTTCACGAGCCCGCTGCACAAGCTCTGCTAC
ATGTCGAAGCGCTTCAGCGGCCAGACTCTGAGTCCATTTGGGACATTCAC
TCCAAGTTTCAAGCCAGACGTGCGTCAACTTGCAATCCAGCTCATTGAGA
GGATGGACCCTTTCTTTCTTCGAGAAACTCTGAACGTGGACTTCAACAGC
AACTGCCGCCTGCTGCGTTGCTGGCAAGTGGAGATGTACAGGGCGCTGAT
GCAGGCGCTGCCTGAGGGAATCGCCCCCGCACCGGATGCTGAGGAGGTAA
TGTGCTGCTGCTTGCGCGGTGCTACGTACTTGACTTCATGTGATCGCTGG
TGTTCACCGCATGATGCGATCACATCAAAGCGGTTTCCGGCCCTTCAAGT
TGTAGCGCCAGCGACAGCTGCTGCTGTCAGTTTGTCACTATCGTTGTTGC
TTGGGACCTGGAGGCAACTGCCATGGGTCAGTACTGAACACATGGCTCAG
CTTTGGTCCTTCTGTATCTGCAGCAGATTTGAGCACCAGCACGCTTTGAA
TGGAGTCAACTGCAAAAAAGCTCTGCACACTGCATGTGCCATCATACAGA
TTTTCTGCCCGACACAGGCGGATGCCAAAATTGATACATGTTTGGCGCGT
ACCTGTTGTTCTTTCAGTCTTGGGCAGTCAGCAAAAGGGATTTTACTTCA
GGTGACATTGCTTACTGACTCAATTGTTGAACTCACAGCCTGCGTCACAG
GAGGAGCGAGTCACTGACAGTGCCAGCCTTTGGAAGTAGACATCACAACT
TCAACACGCGTGCCTGCCTGTCGTATTGCAGATTGTGAATGCACCATCGA
GTCAACCGCGGGTGTTGAAATTCCCTTCATGCACTGCACTAGTTGCTGCA
GCTGTGAAGGCCAATCATGTAAAAGCTGTGCTTGTGTGGGTTGACTGATT
TAAAACCTTGCCCATGGCCAGTGCGGTCGGGGGGTTGGGGCGTCTCAGAG
TCGGCAGCGTTGACTCAGTGATCTTAATGCATACCCAGGACAACTGTAGA
AGCTTCAAATACGTGTGCATCACCCGCGATCCTCCTTTTTGCCTGGCCCT
TGTAGCCATGATGGTGCTTGCTTTGTTGCCATTGTGTTGCAAAGGGCCGC
CACTCACTTGAATTTCGAAATTTTGTACATGCTATTGCTGTTGCTATTGC
TGTTGGCACTCGCAGGCTCTGGGGCCGGACGGCTTCATGGAGTTCTTCGT
GGGCAACCCCTACAATGCGGGGCTGGAGATCGTGCGGGACAGCATCCTGG
CTGAAGACCACTACAGGCGCTACCTCGAAGGCAGCAACCACTGGTCCATG
GCAATGGGTGTGGTGATAAAGGAATTTCTCTTGATTGACCTCATCAGCCC
GGGGAAGTTCGATGGCAGGCCTCCCACATCTCAAGAAGCGTACCCAAACC
TGCTGTCTGTGGTGGTGGCTGCGGACTACAAGAGTGCTGTGGTGTGGCAC
AAGGGCTCAATGATTCAAGAGGTGCAGATGGCAGGCAATGCTGACGAGGC
TTGCAAGCTGGCGCTGCAGGCCATCAAGAATGCTGCAGCTTGAAGTGAGA
GCTAACGCATCAGTCGTCGCCAGAGTGAGTGTGAGCATTAAATGTTGCCA
GAGTGAGTGTGAGCCAAAGTAGGCATCAGTTG
back to top

Coding sequence (CDS) from alignment at Contig_116:278709..289290+

>mRNA_11290 ID=mRNA_11290|Name=jgi.p|Trimin1|352360|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2163bp|location=Sequence derived from alignment at Contig_116:278709..289290+ (Tribonema minus UTEX_B_3156 )
ATGTGGTGCGACAAAGCACCTCTGGATGGGGCCCTGAGGCTCGGCACTGA
CGAACACGGCGCAGTCACCTGGTTCGCGCAGCACTCATGCGCAATACGCG
AGGACCAGGGACTGCCGCCAATCATCGAGGCCGTGCGACGCTCTACGCGA
GCGCTGACAGCTGATGGCGGCGAAAAATCACGCACAGCTGTGGCCGAGCA
GCTCCCAGAATCGTTGCTACGGTGGGCAGCAGATACGACGGCCGCAGCGT
CGACGCTCCCCACTGCGGTGCAAGCGATCTACGCCGCAACTGCCGTCACG
GAGACGGGGACCACTGAGCCAGCCCCACACACCCACGGCATTGTGCCTGG
CGCCGAGGCGGCCGCTGCGGCGGCGACCGTACCTGGCCCTCAAGCCGCTG
CCGCGGCTGCCTCTTCCACGCGCGCTAAAACACAAACTAGCGCGGAAGAA
AGCAGCTGCAGCGGCGGGCAGGAGGACGACGACGACGACTGGGAGGCCTA
TGCTGACGAGATCTGCAGGCAGGACTGCCTGGTGGAGGACCTAGAGGCTG
CCTCGGCTGGTGCCGTGGGCAAGCCGACGCAGGCTACACTTATTGGTGAC
TCGCGTGACACCAGCCGCCGCCGCCAACAGGCTAGCGCGCGGGTCCTGGC
GCAGCTGCGCAGCCAGCGTGCGTCCGGGGCAATGGCGTGGATGAGCGTGC
CACCCGCTGTCAATGACCGCCCGGGTGCGGCGCCCATGTCCAGCACCTCC
ATCGATGACTACCCTGGCCACAACTCGGAGGGCATCAAAGGGCGGCTCCG
CTCCTTCTACATCAATCGCTACGTCACGTGTAGCCGGCTCTGGGACCTGC
TGGACGTCACGGGGTTTGTCATAGTCGAAGGCCCTCCTGAGTCGGGCAAA
ACAGCGCTGTTGCAGCTGCTCAGCGCCTTCCTCCAGAGGGAGCTGGGCGT
CAAGCCCATCTACGCGTCGTGCGCCCTCTTGGACGAGGCTCGAGGCCATG
ACATTCACGCCGCGCTTGTGGCAGCTTGCGGTGCCACGTTACGCGAGCTG
CGGGCGGCGCAAGTCCCCTGCACCGTCTTGCTGGACGAGGCACAGCACCT
CTACGAAGAAACCGACAGCAACCGCACGTTCTGGTCTCACATCAAGATGC
TCATGCGAGGCAGCTGCGTCCGCATCGCGCTCTTTGCTGCCTACGGCGAC
CGAAGCAGCAACCGCCCGCCCACCTACCCTGGTATGCCGGTGTCCATAAT
GCCCGACGTGATGGTCGGCAACTTTCCTGCACAGGGCGGCAAGGTCAGCT
TGAGCCTGTCCCAGCAGGAGTGGCACGACCTGTTTGAGAGGTTCGCCGAC
GCGACAGGCTTGCAGCTGGAGAAGCGGCTGCGAGACTACATTTTCTGGCT
GTGTGCTGGCCAGGTGGGCCTTCTCACCTTCTGCCTGGACTACCTAGTCA
ATGAGATCGTCAACGACTTGCGCATTTCCTCTAAAGTCAATGGCAATGCC
ATGCTGGTCTTCACGAGCCCGCTGCACAAGCTCTGCTACATGTCGAAGCG
CTTCAGCGGCCAGACTCTGAGTCCATTTGGGACATTCACTCCAAGTTTCA
AGCCAGACGTGCGTCAACTTGCAATCCAGCTCATTGAGAGGATGGACCCT
TTCTTTCTTCGAGAAACTCTGAACGTGGACTTCAACAGCAACTGCCGCCT
GCTGCGTTGCTGGCAAGTGGAGATGTACAGGGCGCTGATGCAGGCGCTGC
CTGAGGGAATCGCCCCCGCACCGGATGCTGAGGAGGCTCTGGGGCCGGAC
GGCTTCATGGAGTTCTTCGTGGGCAACCCCTACAATGCGGGGCTGGAGAT
CGTGCGGGACAGCATCCTGGCTGAAGACCACTACAGGCGCTACCTCGAAG
GCAGCAACCACTGGTCCATGGCAATGGGTGTGGTGATAAAGGAATTTCTC
TTGATTGACCTCATCAGCCCGGGGAAGTTCGATGGCAGGCCTCCCACATC
TCAAGAAGCGTACCCAAACCTGCTGTCTGTGGTGGTGGCTGCGGACTACA
AGAGTGCTGTGGTGTGGCACAAGGGCTCAATGATTCAAGAGGTGCAGATG
GCAGGCAATGCTGACGAGGCTTGCAAGCTGGCGCTGCAGGCCATCAAGAA
TGCTGCAGCTTGA
back to top