Trimin1|352359|estExt_Genemark1.C_Ctg_1160044 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352359
Unique Name	Trimin1\|352359\|estExt_Genemark1.C_Ctg_1160044
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	712

Homology

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BLAST of jgi.p|Trimin1|352359 vs. uniprot
Match: A0A835ZBN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN4_9STRA)

HSP 1 Score: 1154 bits (2984), Expect = 0.000e+0
Identity = 711/711 (100.00%), Postives = 711/711 (100.00%), Query Frame = 0

Query:    1 MALRRPPLTNTRFPRINGSVAEELYRPIQTWELDNAWRAFTRPDPENNGVVLDSSLLPGQSAPPPGLADGELISNDLMDVVTDLMNNRQVQDAVLGTDIVHNMFAALAHDVGTGFADARPPPPRPPASRNRFAHLDSLSVFPGAHYGPPPLPDAAAEHHHQQHGLFLEPLLQLRGYAGPGSEWSGPLGGTYRDSSRAQAAQRGTQADAAQRQRPAAMAXXXXXXXXXXXXXXXXXXXXNEEAFKRELEDYTCALCLDATVGAHLCTCRCNKIFCGDSLSPVKLADCFGFPGPSPLLSAAAAARHAIRARTEESTRAAHYVFAQRKCILEYLSRHAVRRVLPDGRMGLACPTCSQRVDSVSAFPLMDATVERFVRGAPACASRDDWYARDAQWQRLHATGWPDKXXXXXXXXXXXXVRCSSDLRLVNCVNFFFEVGRAGVRVARNCHARDAAXXXXXXXXXXXXWRRLRGWPDKLRASGWHDKAREAVERRAVPTDPPDLSGGGSGSTGXDGSSAHHHVDSGDVPFAARADPLDGNPGRASAASXXXXXXXAPSAGDSAPRXXXXXXXXEYGTAAWWAALPEPVRAHGLKIFSLGGSGSGXXXXXXXXXXXXXCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARHGARASSKAFLLRALLPIIALLTRRHTPMELQQRGGSGAASLLAWQCSAL 711
            MALRRPPLTNTRFPRINGSVAEELYRPIQTWELDNAWRAFTRPDPENNGVVLDSSLLPGQSAPPPGLADGELISNDLMDVVTDLMNNRQVQDAVLGTDIVHNMFAALAHDVGTGFADARPPPPRPPASRNRFAHLDSLSVFPGAHYGPPPLPDAAAEHHHQQHGLFLEPLLQLRGYAGPGSEWSGPLGGTYRDSSRAQAAQRGTQADAAQRQRPAAMAXXXXXXXXXXXXXXXXXXXXNEEAFKRELEDYTCALCLDATVGAHLCTCRCNKIFCGDSLSPVKLADCFGFPGPSPLLSAAAAARHAIRARTEESTRAAHYVFAQRKCILEYLSRHAVRRVLPDGRMGLACPTCSQRVDSVSAFPLMDATVERFVRGAPACASRDDWYARDAQWQRLHATGWPDKXXXXXXXXXXXXVRCSSDLRLVNCVNFFFEVGRAGVRVARNCHARDAAXXXXXXXXXXXXWRRLRGWPDKLRASGWHDKAREAVERRAVPTDPPDLSGGGSGSTGXDGSSAHHHVDSGDVPFAARADPLDGNPGRASAASXXXXXXXAPSAGDSAPRXXXXXXXXEYGTAAWWAALPEPVRAHGLKIFSLGGSGSGXXXXXXXXXXXXXCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARHGARASSKAFLLRALLPIIALLTRRHTPMELQQRGGSGAASLLAWQCSAL
Sbjct:    1 MALRRPPLTNTRFPRINGSVAEELYRPIQTWELDNAWRAFTRPDPENNGVVLDSSLLPGQSAPPPGLADGELISNDLMDVVTDLMNNRQVQDAVLGTDIVHNMFAALAHDVGTGFADARPPPPRPPASRNRFAHLDSLSVFPGAHYGPPPLPDAAAEHHHQQHGLFLEPLLQLRGYAGPGSEWSGPLGGTYRDSSRAQAAQRGTQADAAQRQRPAAMAXXXXXXXXXXXXXXXXXXXXNEEAFKRELEDYTCALCLDATVGAHLCTCRCNKIFCGDSLSPVKLADCFGFPGPSPLLSAAAAARHAIRARTEESTRAAHYVFAQRKCILEYLSRHAVRRVLPDGRMGLACPTCSQRVDSVSAFPLMDATVERFVRGAPACASRDDWYARDAQWQRLHATGWPDKXXXXXXXXXXXXVRCSSDLRLVNCVNFFFEVGRAGVRVARNCHARDAAXXXXXXXXXXXXWRRLRGWPDKLRASGWHDKAREAVERRAVPTDPPDLSGGGSGSTGXDGSSAHHHVDSGDVPFAARADPLDGNPGRASAASXXXXXXXAPSAGDSAPRXXXXXXXXEYGTAAWWAALPEPVRAHGLKIFSLGGSGSGXXXXXXXXXXXXXCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARHGARASSKAFLLRALLPIIALLTRRHTPMELQQRGGSGAASLLAWQCSAL 711

[Close]

BLAST of jgi.p|Trimin1|352359 vs. uniprot
Match: A0A835YR15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR15_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.950e-21
Identity = 61/167 (36.53%), Postives = 83/167 (49.70%), Query Frame = 0

Query:  240 EEAFKRELEDYTCALCLDATVGAHLCTCRCNKIFCGDSLSPVKLADCFGFPGPSPLLSAAAAARHAIRARTEESTRAAHYVFAQRKCILEYLSRHAVRRV-LPDG--RMGLACPTCSQRVDSVSAFPLMDATVERFVRGAPACASRDDWYARDAQWQRLHATGWPDK 403
            E AF++EL DY CALC +  VGAH C+CRCN IFCG+                                                 C+L  LS+ A ++   P+   R G +CP+C  RVDS + F ++DA V RFVR APACAS++ W AR A+W++L+   WP +
Sbjct:  241 ERAFRQELGDYACALCRETVVGAHNCSCRCNGIFCGE-------------------------------------------------CLLTDLSKQAAQQCSAPNAPARGGPSCPSCRARVDSANGFGVIDAAVGRFVRAAPACASKERWVARGARWEQLNEHKWPQQ 358

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352359 vs. uniprot

BLAST of jgi.p|Trimin1|352359 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZBN4_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YR15_9STRA	4.950e-21	36.53	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 230..375 e-value: 1.0E-5 score: 27.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..540
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 601..661
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 601..621
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_116	contig	Contig_116:243999..250530 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352359	mRNA_11286	Tribonema minus UTEX_B_3156	mRNA	Contig_116 243999..250598 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352359|estExt_Genemark1.C_Ctg_1160044 ID=Trimin1|352359|estExt_Genemark1.C_Ctg_1160044|Name=jgi.p|Trimin1|352359|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=712bp
MALRRPPLTNTRFPRINGSVAEELYRPIQTWELDNAWRAFTRPDPENNGV
VLDSSLLPGQSAPPPGLADGELISNDLMDVVTDLMNNRQVQDAVLGTDIV
HNMFAALAHDVGTGFADARPPPPRPPASRNRFAHLDSLSVFPGAHYGPPP
LPDAAAEHHHQQHGLFLEPLLQLRGYAGPGSEWSGPLGGTYRDSSRAQAA
QRGTQADAAQRQRPAAMAAAAGAEAAAARFAAAAAAAANEEAFKRELEDY
TCALCLDATVGAHLCTCRCNKIFCGDSLSPVKLADCFGFPGPSPLLSAAA
AARHAIRARTEESTRAAHYVFAQRKCILEYLSRHAVRRVLPDGRMGLACP
TCSQRVDSVSAFPLMDATVERFVRGAPACASRDDWYARDAQWQRLHATGW
PDKWQRLHASGWPDKVRCSSDLRLVNCVNFFFEVGRAGVRVARNCHARDA
AWRRLRASGWPDKWRRLRGWPDKLRASGWHDKAREAVERRAVPTDPPDLS
GGGSGSTGGDGSSAHHHVDSGDVPFAARADPLDGNPGRASAASTAAAAAA
APSAGDSAPRAAAAAAAPEYGTAAWWAALPEPVRAHGLKIFSLGGSGSGG
SGGGGSGSGSGSCSGGGSSGGGGSGGGSGGGGGSDGGSGGGSGGGGGSGG
GSGGSGAAEARHGARASSKAFLLRALLPIIALLTRRHTPMELQQRGGSGA
ASLLAWQCSAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD