Trimin1|338158|MIX46921_4_31 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|338158
Unique Name	Trimin1\|338158\|MIX46921_4_31
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	572

Homology

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BLAST of jgi.p|Trimin1|338158 vs. uniprot
Match: A0A835YHA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA3_9STRA)

HSP 1 Score: 624 bits (1608), Expect = 2.560e-217
Identity = 571/571 (100.00%), Postives = 571/571 (100.00%), Query Frame = 0

Query:    1 MGAGLPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDAWLQPLAPSHDGGSGSCSSGGAAANITALELPNCRRLTSAAVTRLGPLPYLRSVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLAPVAASALEELSLGWCRGLAPPQQRSPPPPAPAAPRPLQPLGVKLPPAPRLTSLTLAATGLTDAGLAALCAAAPALTRLSLSQCMLLXXXXXXXXXXXXXXXXXXXXXXXARVARVAPPPPRLRALALGGGAAASADLVAMARDSDGLRGVTALSVAGCARVDDGCARALAALPALARLDARDTXXXXXXXXXXXXXXAGRSLRALDVCFCSIGNAGLAALSVAAAGLTELRLDSREATDAGVAHLSKLAGLRVLHLGSTSVSDDAIVGTISNLRALESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRTSXXXXXXXXXXXXXXXXSLALFGCGVPRAPLCAALPALQALKA 571
            MGAGLPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDAWLQPLAPSHDGGSGSCSSGGAAANITALELPNCRRLTSAAVTRLGPLPYLRSVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLAPVAASALEELSLGWCRGLAPPQQRSPPPPAPAAPRPLQPLGVKLPPAPRLTSLTLAATGLTDAGLAALCAAAPALTRLSLSQCMLLXXXXXXXXXXXXXXXXXXXXXXXARVARVAPPPPRLRALALGGGAAASADLVAMARDSDGLRGVTALSVAGCARVDDGCARALAALPALARLDARDTXXXXXXXXXXXXXXAGRSLRALDVCFCSIGNAGLAALSVAAAGLTELRLDSREATDAGVAHLSKLAGLRVLHLGSTSVSDDAIVGTISNLRALESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRTSXXXXXXXXXXXXXXXXSLALFGCGVPRAPLCAALPALQALKA
Sbjct:    1 MGAGLPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDAWLQPLAPSHDGGSGSCSSGGAAANITALELPNCRRLTSAAVTRLGPLPYLRSVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLAPVAASALEELSLGWCRGLAPPQQRSPPPPAPAAPRPLQPLGVKLPPAPRLTSLTLAATGLTDAGLAALCAAAPALTRLSLSQCMLLXXXXXXXXXXXXXXXXXXXXXXXARVARVAPPPPRLRALALGGGAAASADLVAMARDSDGLRGVTALSVAGCARVDDGCARALAALPALARLDARDTXXXXXXXXXXXXXXAGRSLRALDVCFCSIGNAGLAALSVAAAGLTELRLDSREATDAGVAHLSKLAGLRVLHLGSTSVSDDAIVGTISNLRALESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRTSXXXXXXXXXXXXXXXXSLALFGCGVPRAPLCAALPALQALKA 571

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BLAST of jgi.p|Trimin1|338158 vs. uniprot
Match: A0A1E7FSH0_9STRA (RNI-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSH0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.060e-8
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 0

Query:    4 GLPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDAWLQPLAPSHD----GGSGSCSS 68
            GLP +++D + A L +H A+   TL  L NCE+ SL+L GCRGV D+WL+PL+ S       GS SC+S
Sbjct:  101 GLPQDIVDDVTASLVKHSALNATTLRVLRNCELGSLTLSGCRGVTDSWLEPLSCSSSTPTTNGSSSCAS 169

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BLAST of jgi.p|Trimin1|338158 vs. uniprot
Match: A0A7S1TXE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXE3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.040e-8
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:    5 LPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDAWLQPLAPSHDGGSGSCSSGGAAANITALELPNCRRLTSAAVTRLGPLPYLRSVN 104
            LP ++  +++ +L  H A+    LA L +C++ SLSL+GCRGV+D W  PL+ S    S           +TAL++  CR ++   +  LG LP L  +N
Sbjct:   92 LPPDLTQRVVDILVEHRALTLGGLAALRDCDLQSLSLQGCRGVNDTWFVPLSSSEIPRS-----------LTALDVGRCREVSDLGLRTLGCLPLLEKLN 180

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|338158 vs. uniprot

BLAST of jgi.p|Trimin1|338158 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YHA3_9STRA	2.560e-217	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1E7FSH0_9STRA	3.060e-8	47.83	RNI-like protein n=1 Tax=Fragilariopsis cylindrus ...	[more]
A0A7S1TXE3_9STRA	8.040e-8	35.00	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 569..571
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 147..177 e-value: 21.0 score: 7.8 coord: 267..295 e-value: 0.73 score: 18.1 coord: 242..266 e-value: 87.0 score: 3.4 coord: 394..424 e-value: 71.0 score: 4.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..234
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 340..552
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 112..307
None	No IPR available	PANTHER	PTHR13382:SF25	OS03G0633100 PROTEIN	coord: 112..307 coord: 35..109
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 35..109
None	No IPR available	PANTHER	PTHR13382:SF25	OS03G0633100 PROTEIN	coord: 340..552
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 71..387
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 313..553
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 367..391 e-value: 630.0 score: 0.5 coord: 394..418 e-value: 31.0 score: 10.7 coord: 293..323 e-value: 480.0 score: 1.4 coord: 267..292 e-value: 0.29 score: 20.2 coord: 98..122 e-value: 6.4 score: 15.7 coord: 147..172 e-value: 1.7E-4 score: 31.0 coord: 72..97 e-value: 31.0 score: 10.8 coord: 173..197 e-value: 19.0 score: 12.4 coord: 242..266 e-value: 500.0 score: 1.3 coord: 492..517 e-value: 130.0 score: 5.9
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 150..170 e-value: 0.032 score: 14.3 coord: 395..416 e-value: 0.5 score: 10.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 232..371 e-value: 9.9E-16 score: 59.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 115..216 e-value: 2.1E-18 score: 68.2 coord: 372..459 e-value: 1.5E-12 score: 49.1 coord: 460..570 e-value: 6.3E-13 score: 50.4 coord: 10..114 e-value: 9.1E-10 score: 40.1

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_90	contig	Contig_90:81870..85040 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|338158	mRNA_11408	Tribonema minus UTEX_B_3156	mRNA	Contig_90 81870..85040 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|338158|MIX46921_4_31 ID=Trimin1|338158|MIX46921_4_31|Name=jgi.p|Trimin1|338158|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=572bp
MGAGLPTEVIDKLLALLSRHHAVRRDTLAQLSNCEMSSLSLKGCRGVDDA
WLQPLAPSHDGGSGSCSSGGAAANITALELPNCRRLTSAAVTRLGPLPYL
RSVNLRHCHSLDSAALCALAACPLLTSLNAAHIRTLGDDALEALAQAAAL
RELDLEGCHAITDAGVAHIARLTNLRRLNLAQCHGLTQRGVDLLAPVAAS
ALEELSLGWCRGLAPPQQRSPPPPAPAAPRPLQPLGVKLPPAPRLTSLTL
AATGLTDAGLAALCAAAPALTRLSLSQCMLLTDRGAAGLADGLPSLTDLD
VSRCARVARVAPPPPRLRALALGGGAAASADLVAMARDSDGLRGVTALSV
AGCARVDDGCARALAALPALARLDARDTALTSAGLARVVSGCAGRSLRAL
DVCFCSIGNAGLAALSVAAAGLTELRLDSREATDAGVAHLSKLAGLRVLH
LGSTSVSDDAIVGTISNLRALESLEICSGRVTDRGAAALAPLARLRHLDL
SQNAHVTSAAAPHIAALSALTSLNLSRTSVARGAVPHLARLARLESLALF
GCGVPRAPLCAALPALQALKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf