mRNA_11418 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172191
Unique NamemRNA_11418
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172191 vs. uniprot
Match: A0A836C7G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7G4_9STRA)

HSP 1 Score: 363 bits (932), Expect = 3.890e-127
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDSHVWKYDGPVASGRGRSFYVFILDATDWSRTAVSAAGGVHAYLLEQLIGKSDQRNACCGGFALVDDLLKFVSSELNVTSNSSAVNSWESDGSRALSFEECKLVQLAVKMWQDHGPSHIFEVPASYETVIG 537
            MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDSHVWKYDGPVASGRGRSFYVFILDATDWSRTAVSAAGGVHAYLLEQLIGKSDQRNACCGGFALVDDLLKFVSSELNVTSNSSAVNSWESDGSRALSFEECKLVQLAVKMWQDHGPSHIFEVPASYETVIG
Sbjct:    1 MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDSHVWKYDGPVASGRGRSFYVFILDATDWSRTAVSAAGGVHAYLLEQLIGKSDQRNACCGGFALVDDLLKFVSSELNVTSNSSAVNSWESDGSRALSFEECKLVQLAVKMWQDHGPSHIFEVPASYETVIG 179
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BLAST of jgi.p|Trimin1|172191 vs. uniprot
Match: A0A821BK86_9BILA (Hypothetical protein n=2 Tax=Rotaria socialis TaxID=392032 RepID=A0A821BK86_9BILA)

HSP 1 Score: 103 bits (256), Expect = 2.020e-24
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 1 
Query:    1 MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDSHVWKY--------DGPVASGRGRSFYVFILDATDWSRTAVSAAGG--VHAYLLEQLIG-KSDQRNACCGGFALVDDLLKFVSSELNVTSNSSAVNSWESDGSRALSFEECKLVQLAVKMWQDHGPSHIFEVPASYETVI 534
            MGK++F++L+R+ K   G   ++ +IS  S  + P   YAGVI+Y  D    W+          G     RGRSFY+ I    +WS       G   VH YLL+ ++G +SDQ+   CGGFA +   LKF S  LN T  + A    ESDG R LS  E  LV    + ++ HG  H+F VP   + ++
Sbjct:    1 MGKKNFKDLYRRVKGEHGN--VTCEISVFSDNFNPLLRYAGVIIYSIDGKFEWENYGEHIEDTGGKAYGRRGRSFYIIIQCTDNWSDDYYKPVGQGTVHDYLLKNVMGIESDQKRIACGGFAYLFHELKFSSIWLNGTDQTDA----ESDGDRYLSDSEKILVAYCWEEYKKHGAHHVFSVPFFIDELL 183
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BLAST of jgi.p|Trimin1|172191 vs. uniprot
Match: A0A818NGI9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818NGI9_9BILA)

HSP 1 Score: 90.1 bits (222), Expect = 8.860e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:    1 MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDSHVWK-YDGPVASGR-GRSFYVFILDATDWSRTAV--SAAGGVHAYLLEQLIG-KSDQRNACCGGFALVDDLLKFVSSELNV 378
            MGK++F++L+R+ K  R  G ++ +IS  S K+ P   YAGVI+Y  D    W+ Y+G  A GR GRSFY+ I     WS      S  G VH YLL+ +IG +SDQ+   CGGFA +   L+F S  LNV
Sbjct:    1 MGKKNFKDLYRRIK--REHGTVTCEISVFSDKFNPLLRYAGVIIYAIDGKFEWENYEGGKAYGRRGRSFYIIIQCTDKWSDDYYKPSGQGTVHDYLLKNVIGIESDQKRIACGGFAYLYGELRFSSIWLNV 129
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172191 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C7G4_9STRA3.890e-127100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A821BK86_9BILA2.020e-2436.51Hypothetical protein n=2 Tax=Rotaria socialis TaxI... [more]
A0A818NGI9_9BILA8.860e-2044.27Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:170112..170651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172191|e_gw1.90.2.1
Hectar predicted targeting categoryother localisation
TranscriptId172513
TrackFilteredModels1
ProteinId172191
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172191gene_11418Tribonema minus UTEX_B_3156 geneContig_90 170112..170651 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11418_1exon_11418_1Tribonema minus UTEX_B_3156 exonContig_90 170112..170651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11418CDS_11418Tribonema minus UTEX_B_3156 CDSContig_90 170112..170651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172191Trimin1|172191|e_gw1.90.2.1Tribonema minus UTEX_B_3156 polypeptideContig_90 170112..170651 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11418 ID=mRNA_11418|Name=jgi.p|Trimin1|172191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_90:170112..170651- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGCGTAGCTTTCGAGAGCTATTCCGTAAGGCAAAGGAGGCTCG
GGGAGGCGGCCCGCTTTCTATTAAGATCAGTTGCAGCTCCTCAAAGTACG
CGCCCACGGCCAACTATGCAGGCGTGATCGTCTACCACAAGGACGACTCT
CATGTTTGGAAGTATGACGGGCCTGTAGCCAGTGGACGGGGACGCAGCTT
CTACGTGTTCATACTGGATGCGACCGACTGGTCCCGTACGGCTGTGTCAG
CAGCAGGTGGCGTCCACGCGTACCTGCTCGAGCAGCTGATTGGAAAGAGC
GACCAGCGCAACGCCTGCTGCGGCGGGTTTGCGCTCGTTGACGATTTGCT
GAAGTTCGTCAGTTCCGAGCTGAACGTCACCTCGAATTCCTCCGCTGTCA
ACTCCTGGGAGTCTGATGGCAGCAGGGCTCTCAGCTTCGAGGAGTGCAAG
CTCGTGCAGCTGGCGGTTAAGATGTGGCAAGATCATGGCCCCAGCCACAT
CTTTGAGGTCCCCGCTTCCTACGAGACTGTCATCGGGTGA
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protein sequence of jgi.p|Trimin1|172191

>Trimin1|172191|e_gw1.90.2.1 ID=Trimin1|172191|e_gw1.90.2.1|Name=jgi.p|Trimin1|172191|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp
MGKRSFRELFRKAKEARGGGPLSIKISCSSSKYAPTANYAGVIVYHKDDS
HVWKYDGPVASGRGRSFYVFILDATDWSRTAVSAAGGVHAYLLEQLIGKS
DQRNACCGGFALVDDLLKFVSSELNVTSNSSAVNSWESDGSRALSFEECK
LVQLAVKMWQDHGPSHIFEVPASYETVIG*
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mRNA from alignment at Contig_90:170112..170651-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11418 ID=mRNA_11418|Name=jgi.p|Trimin1|172191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_90:170112..170651- (Tribonema minus UTEX_B_3156 )
ATGGGCAAGCGTAGCTTTCGAGAGCTATTCCGTAAGGCAAAGGAGGCTCG
GGGAGGCGGCCCGCTTTCTATTAAGATCAGTTGCAGCTCCTCAAAGTACG
CGCCCACGGCCAACTATGCAGGCGTGATCGTCTACCACAAGGACGACTCT
CATGTTTGGAAGTATGACGGGCCTGTAGCCAGTGGACGGGGACGCAGCTT
CTACGTGTTCATACTGGATGCGACCGACTGGTCCCGTACGGCTGTGTCAG
CAGCAGGTGGCGTCCACGCGTACCTGCTCGAGCAGCTGATTGGAAAGAGC
GACCAGCGCAACGCCTGCTGCGGCGGGTTTGCGCTCGTTGACGATTTGCT
GAAGTTCGTCAGTTCCGAGCTGAACGTCACCTCGAATTCCTCCGCTGTCA
ACTCCTGGGAGTCTGATGGCAGCAGGGCTCTCAGCTTCGAGGAGTGCAAG
CTCGTGCAGCTGGCGGTTAAGATGTGGCAAGATCATGGCCCCAGCCACAT
CTTTGAGGTCCCCGCTTCCTACGAGACTGTCATCGGGTGA
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Coding sequence (CDS) from alignment at Contig_90:170112..170651-

>mRNA_11418 ID=mRNA_11418|Name=jgi.p|Trimin1|172191|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_90:170112..170651- (Tribonema minus UTEX_B_3156 )
ATGGGCAAGCGTAGCTTTCGAGAGCTATTCCGTAAGGCAAAGGAGGCTCG
GGGAGGCGGCCCGCTTTCTATTAAGATCAGTTGCAGCTCCTCAAAGTACG
CGCCCACGGCCAACTATGCAGGCGTGATCGTCTACCACAAGGACGACTCT
CATGTTTGGAAGTATGACGGGCCTGTAGCCAGTGGACGGGGACGCAGCTT
CTACGTGTTCATACTGGATGCGACCGACTGGTCCCGTACGGCTGTGTCAG
CAGCAGGTGGCGTCCACGCGTACCTGCTCGAGCAGCTGATTGGAAAGAGC
GACCAGCGCAACGCCTGCTGCGGCGGGTTTGCGCTCGTTGACGATTTGCT
GAAGTTCGTCAGTTCCGAGCTGAACGTCACCTCGAATTCCTCCGCTGTCA
ACTCCTGGGAGTCTGATGGCAGCAGGGCTCTCAGCTTCGAGGAGTGCAAG
CTCGTGCAGCTGGCGGTTAAGATGTGGCAAGATCATGGCCCCAGCCACAT
CTTTGAGGTCCCCGCTTCCTACGAGACTGTCATCGGGTGA
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