mRNA_11453 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A836C814_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C814_9STRA) HSP 1 Score: 236 bits (601), Expect = 2.090e-78 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 Query: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK Sbjct: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 126
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: D8LK70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK70_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.010e-55 Identity = 93/126 (73.81%), Postives = 110/126 (87.30%), Query Frame = 1 Query: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 WM+ + +M++LK+M + ILHNVE+VQ+R++ I+QEQE+DLLRAFRARLFDVQTELEKEK +KD G S WIERTRR EAEL+WAKE ADRLDRVNQGL REN RLK FKSQE+DR FLIKQLVA+K Sbjct: 3 WMQGNHSMESLKNMHQQILHNVEMVQDRSSKILQEQEKDLLRAFRARLFDVQTELEKEKTRKDGGDSAWIERTRRTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK 128
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A482S3B0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3B0_9ARCH) HSP 1 Score: 169 bits (429), Expect = 3.300e-50 Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 1 Query: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 WM+ D + L++M IL NVELVQ+RTA I+QEQERDLLRAFRARLFDVQTELEKEK KKDDGA+ WIER+R++EAE+EWAKE ADRL+RVNQ L +EN RLK F SQEEDR FLIKQLVAVK Sbjct: 102 WMKSDLKISKLRAMHGQILGNVELVQDRTARILQEQERDLLRAFRARLFDVQTELEKEKGKKDDGAAAWIERSRQLEAEVEWAKEVADRLERVNQTLLQENNRLKSQFTSQEEDRNFLIKQLVAVK 227
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A7S1CCY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCY3_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.290e-43 Identity = 80/119 (67.23%), Postives = 96/119 (80.67%), Query Frame = 1 Query: 22 MQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 M+ L+ M NIL N+E VQE+T+ I+ E ERDLLRAFRARLFDVQTELEKEK + +DGA+VWIE+ R++E EL+WAKE ADRLDR NQ L REN RLK FK+QE+DR +LI QLVA K Sbjct: 2 MEVLRDMHTNILGNIEHVQEQTSRILAENERDLLRAFRARLFDVQTELEKEKARAEDGAAVWIEKNRQLEKELDWAKEMADRLDRHNQALTRENGRLKTQFKTQEDDRNYLIHQLVAAK 120
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: K3X1U5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1U5_GLOUD) HSP 1 Score: 146 bits (368), Expect = 2.570e-39 Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 1 Query: 13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 D +M+ ++ M +NI+ +V+ VQ+RT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WIE+++++E E+EW KE ADRLDR+NQ L REN RLK F +QE DR FL+KQLV+VK Sbjct: 106 DASMEEIRQMHRNIIESVDQVQDRTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVSVK 227
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A6V1XND5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XND5_HETAK) HSP 1 Score: 140 bits (353), Expect = 4.760e-39 Identity = 77/126 (61.11%), Postives = 99/126 (78.57%), Query Frame = 1 Query: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 WM++D++M LK++ + IL NV+ VQERTA I+QEQERDL R+F+ARLFDVQTELEKEK KKDDGA+ +IE+ +++E E++ +E A RVN L REN RLK F++QEEDR FLIKQLV VK Sbjct: 107 WMKDDRHMAALKALHREILRNVDQVQERTAKILQEQERDLSRSFKARLFDVQTELEKEKGKKDDGAAAYIEKAKQLEEEVDRMREMAXXXXRVNGALVRENGRLKAQFQTQEEDRDFLIKQLVQVK 232
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A8K1CFY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFY3_PYTOL) HSP 1 Score: 144 bits (364), Expect = 9.380e-39 Identity = 75/122 (61.48%), Postives = 96/122 (78.69%), Query Frame = 1 Query: 13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 D M NL+ M ++I+ +V+ VQ+RT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WI++++++E E+EW KE ADRLDR+NQ L REN RLK F +QE DR FL+KQLV VK Sbjct: 108 DSTMDNLRQMHRSIMESVDHVQDRTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIQKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVTVK 229
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A5D6XN60_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN60_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.020e-38 Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 1 Query: 13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 D +M ++ M ++I+ +V+LVQERT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WIE+++++E E+EW KE ADRLDR+NQ L REN RLK F +QE DR FL+KQLV VK Sbjct: 207 DASMDRIRQMHRSIMESVDLVQERTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVGVK 328
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A2R5G3R2_9STRA (WD repeat protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3R2_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.050e-38 Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 1 Query: 1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 WM D+ + N++ + K ++ N+E VQ+ TA ++Q+QERDLLRAFRARLFD+Q+ELE EK K D GAS WIE+ R++E L+WAKE ADRL+RVNQ L +EN RLK FK+QE+DR FLI+QLV VK Sbjct: 92 WMEGDERIGNIRDLHKQLMKNIEHVQDSTAKVLQDQERDLLRAFRARLFDIQSELEVEKSKADVGASSWIEKNRQLERGLDWAKEMADRLERVNQSLQKENTRLKSQFKTQEDDREFLIRQLVTVK 217
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A6G0XQ07_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ07_9STRA) HSP 1 Score: 143 bits (360), Expect = 2.990e-38 Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 1 Query: 13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378 D M +L+S+ KNI+ ++ VQERT I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WI++++++E E+EW KE ADRLDR+NQ L REN RLK F QE DR FL++QLV+VK Sbjct: 102 DDTMNSLRSLHKNIMVSISQVQERTGKILQEQEKDLLRAFRARLYSVQEELETEKNKTDDGASAWIDKSKQLETEVEWTKEMADRLDRLNQSLTRENQRLKTQFSMQENDREFLVRQLVSVK 223 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGATGAGAGAAGACAAGAACATGCAGAACCTCAAGTCCATGCAGAAAAAback to top protein sequence of jgi.p|Trimin1|149344 >Trimin1|149344|gw1.90.65.1 ID=Trimin1|149344|gw1.90.65.1|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDback to top mRNA from alignment at Contig_90:449233..449816+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=584bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_90:449233..449816+ >mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )back to top |