mRNA_11453 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149344
Unique NamemRNA_11453
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A836C814_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C814_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.090e-78
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK
Sbjct:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 126          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: D8LK70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK70_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 4.010e-55
Identity = 93/126 (73.81%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            WM+ + +M++LK+M + ILHNVE+VQ+R++ I+QEQE+DLLRAFRARLFDVQTELEKEK +KD G S WIERTRR EAEL+WAKE ADRLDRVNQGL REN RLK  FKSQE+DR FLIKQLVA+K
Sbjct:    3 WMQGNHSMESLKNMHQQILHNVEMVQDRSSKILQEQEKDLLRAFRARLFDVQTELEKEKTRKDGGDSAWIERTRRTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK 128          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A482S3B0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3B0_9ARCH)

HSP 1 Score: 169 bits (429), Expect = 3.300e-50
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 1
Query:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            WM+ D  +  L++M   IL NVELVQ+RTA I+QEQERDLLRAFRARLFDVQTELEKEK KKDDGA+ WIER+R++EAE+EWAKE ADRL+RVNQ L +EN RLK  F SQEEDR FLIKQLVAVK
Sbjct:  102 WMKSDLKISKLRAMHGQILGNVELVQDRTARILQEQERDLLRAFRARLFDVQTELEKEKGKKDDGAAAWIERSRQLEAEVEWAKEVADRLERVNQTLLQENNRLKSQFTSQEEDRNFLIKQLVAVK 227          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A7S1CCY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCY3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.290e-43
Identity = 80/119 (67.23%), Postives = 96/119 (80.67%), Query Frame = 1
Query:   22 MQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            M+ L+ M  NIL N+E VQE+T+ I+ E ERDLLRAFRARLFDVQTELEKEK + +DGA+VWIE+ R++E EL+WAKE ADRLDR NQ L REN RLK  FK+QE+DR +LI QLVA K
Sbjct:    2 MEVLRDMHTNILGNIEHVQEQTSRILAENERDLLRAFRARLFDVQTELEKEKARAEDGAAVWIEKNRQLEKELDWAKEMADRLDRHNQALTRENGRLKTQFKTQEDDRNYLIHQLVAAK 120          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: K3X1U5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1U5_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 2.570e-39
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            D +M+ ++ M +NI+ +V+ VQ+RT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WIE+++++E E+EW KE ADRLDR+NQ L REN RLK  F +QE DR FL+KQLV+VK
Sbjct:  106 DASMEEIRQMHRNIIESVDQVQDRTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVSVK 227          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A6V1XND5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XND5_HETAK)

HSP 1 Score: 140 bits (353), Expect = 4.760e-39
Identity = 77/126 (61.11%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            WM++D++M  LK++ + IL NV+ VQERTA I+QEQERDL R+F+ARLFDVQTELEKEK KKDDGA+ +IE+ +++E E++  +E A    RVN  L REN RLK  F++QEEDR FLIKQLV VK
Sbjct:  107 WMKDDRHMAALKALHREILRNVDQVQERTAKILQEQERDLSRSFKARLFDVQTELEKEKGKKDDGAAAYIEKAKQLEEEVDRMREMAXXXXRVNGALVRENGRLKAQFQTQEEDRDFLIKQLVQVK 232          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A8K1CFY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFY3_PYTOL)

HSP 1 Score: 144 bits (364), Expect = 9.380e-39
Identity = 75/122 (61.48%), Postives = 96/122 (78.69%), Query Frame = 1
Query:   13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            D  M NL+ M ++I+ +V+ VQ+RT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WI++++++E E+EW KE ADRLDR+NQ L REN RLK  F +QE DR FL+KQLV VK
Sbjct:  108 DSTMDNLRQMHRSIMESVDHVQDRTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIQKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVTVK 229          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A5D6XN60_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN60_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.020e-38
Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 1
Query:   13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            D +M  ++ M ++I+ +V+LVQERT+ I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WIE+++++E E+EW KE ADRLDR+NQ L REN RLK  F +QE DR FL+KQLV VK
Sbjct:  207 DASMDRIRQMHRSIMESVDLVQERTSKILQEQEKDLLRAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFTTQENDREFLVKQLVGVK 328          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A2R5G3R2_9STRA (WD repeat protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3R2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.050e-38
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            WM  D+ + N++ + K ++ N+E VQ+ TA ++Q+QERDLLRAFRARLFD+Q+ELE EK K D GAS WIE+ R++E  L+WAKE ADRL+RVNQ L +EN RLK  FK+QE+DR FLI+QLV VK
Sbjct:   92 WMEGDERIGNIRDLHKQLMKNIEHVQDSTAKVLQDQERDLLRAFRARLFDIQSELEVEKSKADVGASSWIEKNRQLERGLDWAKEMADRLERVNQSLQKENTRLKSQFKTQEDDREFLIRQLVTVK 217          
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Match: A0A6G0XQ07_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ07_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.990e-38
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 1
Query:   13 DKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 378
            D  M +L+S+ KNI+ ++  VQERT  I+QEQE+DLLRAFRARL+ VQ ELE EK K DDGAS WI++++++E E+EW KE ADRLDR+NQ L REN RLK  F  QE DR FL++QLV+VK
Sbjct:  102 DDTMNSLRSLHKNIMVSISQVQERTGKILQEQEKDLLRAFRARLYSVQEELETEKNKTDDGASAWIDKSKQLETEVEWTKEMADRLDRLNQSLTRENQRLKTQFSMQENDREFLVRQLVSVK 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149344 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C814_9STRA2.090e-78100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LK70_ECTSI4.010e-5573.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482S3B0_9ARCH3.300e-5073.81Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1CCY3_9STRA8.290e-4367.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K3X1U5_GLOUD2.570e-3961.48Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6V1XND5_HETAK4.760e-3961.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1CFY3_PYTOL9.380e-3961.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XN60_9STRA1.020e-3862.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2R5G3R2_9STRA1.050e-3860.32WD repeat protein n=1 Tax=Hondaea fermentalgiana T... [more]
A0A6G0XQ07_9STRA2.990e-3861.48Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:449233..449816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149344|gw1.90.65.1
Max annot lvl2759|Eukaryota
EggNOG OGs28KWK@1|root,2QTD7@2759|Eukaryota
Evalue6.57e-56
Seed ortholog2880.D8LK70
Hectar predicted targeting categoryother localisation
TranscriptId149666
TrackFilteredModels1
ProteinId149344
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149344gene_11453Tribonema minus UTEX_B_3156 geneContig_90 449233..449816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11453_1exon_11453_1Tribonema minus UTEX_B_3156 exonContig_90 449233..449507 +
exon_11453_2exon_11453_2Tribonema minus UTEX_B_3156 exonContig_90 449714..449816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11453CDS_11453Tribonema minus UTEX_B_3156 CDSContig_90 449233..449507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149344Trimin1|149344|gw1.90.65.1Tribonema minus UTEX_B_3156 polypeptideContig_90 449233..449816 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGATGAGAGAAGACAAGAACATGCAGAACCTCAAGTCCATGCAGAAAAA
CATTCTGCACAACGTGGAACTAGTCCAAGAAAGGACCGCCACTATCATGC
AGGAGCAGGAGAGGGACCTACTGCGGGCGTTCCGTGCGCGATTGTTCGAC
GTCCAGACCGAGCTCGAGAAGGAAAAACAGAAGAAAGACGACGGTGCCAG
CGTCTGGATAGAGCGGACGCGTAGGATAGAGGCGGAGCTGGAGTGGGCGA
AGGAAACCGCGGACAGGCTTGACAGGGTCAACCAGGGCCTCGGCAGGGAG
AACGCGCGCCTCAAGGGCCACTTCAAGTCGCAGGAGGAGGACAGGGCCTT
CCTCATCAAGCAGCTCGTCGCCGTCAAG
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protein sequence of jgi.p|Trimin1|149344

>Trimin1|149344|gw1.90.65.1 ID=Trimin1|149344|gw1.90.65.1|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
WMREDKNMQNLKSMQKNILHNVELVQERTATIMQEQERDLLRAFRARLFD
VQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRE
NARLKGHFKSQEEDRAFLIKQLVAVK
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mRNA from alignment at Contig_90:449233..449816+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=584bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )
TGGATGAGAGAAGACAAGAACATGCAGAACCTCAAGTCCATGCAGAAAAA CATTCTGCACAACGTGGAACTAGTCCAAGAAAGGACCGCCACTATCATGC AGGAGCAGGAGAGGGACCTACTGCGGGCGTTCCGTGCGCGATTGTTCGAC GTCCAGACCGAGCTCGAGAAGGAAAAACAGAAGAAAGACGACGGTGCCAG CGTCTGGATAGAGCGGACGCGTAGGATAGAGGCGGAGCTGGAGTGGGCGA AGGAAACCGCGGACAGGCTTGACAGGTGGGGTTGTAACACAATCAGCACT GAAGTACGACATGTATACGTACTACAATGAGTTGTACGTCGAGTGTGAAT GTGTTTAGGCACACGGCGTACATGGTGGTATCTGGTACTCTTGCATGGTT TGCGCCATGCTGAGGTGAGGTGAAAGACCTGCTTTGATCAGTAGAATGCC AACATGCTGAGTCTCGCAAACCTGTCGACAGGGTCAACCAGGGCCTCGGC AGGGAGAACGCGCGCCTCAAGGGCCACTTCAAGTCGCAGGAGGAGGACAG GGCCTTCCTCATCAAGCAGCTCGTCGCCGTCAAG
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Coding sequence (CDS) from alignment at Contig_90:449233..449816+

>mRNA_11453 ID=mRNA_11453|Name=jgi.p|Trimin1|149344|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_90:449233..449816+ (Tribonema minus UTEX_B_3156 )
TGGATGAGAGAAGACAAGAACATGCAGAACCTCAAGTCCATGCAGAAAAA
CATTCTGCACAACGTGGAACTAGTCCAAGAAAGGACCGCCACTATCATGC
AGGAGCAGGAGAGGGACCTACTGCGGGCGTTCCGTGCGCGATTGTTCGAC
GTCCAGACCGAGCTCGAGAAGGAAAAACAGAAGAAAGACGACGGTGCCAG
CGTCTGGATAGAGCGGACGCGTAGGATAGAGGCGGAGCTGGAGTGGGCGA
AGGAAACCGCGGACAGGCTTGACAGGGTCAACCAGGGCCTCGGCAGGGAG
AACGCGCGCCTCAAGGGCCACTTCAAGTCGCAGGAGGAGGACAGGGCCTT
CCTCATCAAGCAGCTCGTCGCCGTCAAG
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