mRNA_12806 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172139
Unique NamemRNA_12806
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172139 vs. uniprot
Match: A0A835YLF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF7_9STRA)

HSP 1 Score: 341 bits (874), Expect = 2.310e-113
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 
Query:    1 MESLGVLEWAIAAGAPVQNRKGFRLVAVTGSLEMFQYAASLHWHWDYQMMDALAKHRHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKCLVDCDDLPVDDMPADDAQRACVAAAHGGHVRALRWLREQGCAWHADIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTLEAFFVDALPXXXXXXXXXXXXXXXXXXXXXXXXVAAFGQLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGPWVASFFLSRGAFLSTSIRDTVRYNLRPCPLSLRIVKEVLSWARSKGYTVGFEPEA 1002
            MESLGVLEWAIAAGAPVQNRKGFRLVAVTGSLEMFQYAASLHWHWDYQMMDALAKHRHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKCLVDCDDLPVDDMPADDAQRACVAAAHGGHVRALRWLREQGCAWHADIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTLEAFFVDALPXXXXXXXXXXXXXXXXXXXXXXXXVAAFGQLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGPWVASFFLSRGAFLSTSIRDTVRYNLRPCPLSLRIVKEVLSWARSKGYTVGFEPEA
Sbjct:    1 MESLGVLEWAIAAGAPVQNRKGFRLVAVTGSLEMFQYAASLHWHWDYQMMDALAKHRHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKCLVDCDDLPVDDMPADDAQRACVAAAHGGHVRALRWLREQGCAWHADIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTLEAFFVDALPXXXXXXXXXXXXXXXXXXXXXXXXVAAFGQLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGPWVASFFLSRGAFLSTSIRDTVRYNLRPCPLSLRIVKEVLSWARSKGYTVGFEPEA 334
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172139 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YLF7_9STRA2.310e-113100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:278202..279206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172139|e_gw1.89.8.1
Hectar predicted targeting categoryother localisation
TranscriptId172461
TrackFilteredModels1
ProteinId172139
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172139gene_12806Tribonema minus UTEX_B_3156 geneContig_89 278202..279206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12806_1exon_12806_1Tribonema minus UTEX_B_3156 exonContig_89 278202..279206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12806CDS_12806Tribonema minus UTEX_B_3156 CDSContig_89 278202..279206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172139Trimin1|172139|e_gw1.89.8.1Tribonema minus UTEX_B_3156 polypeptideContig_89 278202..279206 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12806 ID=mRNA_12806|Name=jgi.p|Trimin1|172139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_89:278202..279206+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCCTCGGCGTGCTGGAGTGGGCCATTGCTGCGGGAGCTCCGGT
GCAGAATAGGAAAGGCTTCCGACTCGTTGCCGTCACTGGGAGCCTGGAGA
TGTTCCAGTACGCCGCCAGCCTCCACTGGCACTGGGACTATCAAATGATG
GACGCCCTCGCAAAGCACAGACACCTTGAGGTGCTGCGCTGGGCGCTCGG
CAACGGCTACCACTCGGGATATGGCGCCTTCGAGATTGCCGCACGCCACG
GACACCTGGAGGTCATGAAATGCCTGGTCGATTGCGACGACCTGCCAGTG
GACGACATGCCCGCCGACGACGCCCAGCGCGCGTGCGTAGCCGCTGCACA
CGGGGGGCACGTGCGCGCGCTCCGCTGGCTGCGCGAGCAAGGCTGCGCGT
GGCACGCCGACATCTGCGTAGCGGCCGCCATCGGCGGCGAGGTCGAATGC
CTGCAGTATGCCCGCGCCGACAACTGCCCGTGGGATGAGAGGACCTGCGA
GGCGGCCGCGGGCAGGACTTTGGAAGCCTTCTTCGTTGATGCCTTGCCCG
GCGGCAGCCCGGCGATGCTGCGCTGGGCCCACGAGAACGGCTGCCCTTGG
GACCAGCGCACCTGCAACGCGGTGGCGGCGTTTGGTCAGCTCGAATCCCT
GCAGTACGCCCACCTCCACGGCTGCGAATGGGACGAGGCGACCTCCATCC
AAGCGACCAAGCACGGGCACGTCGACGTTCTCACCTGGGCACACGACCAC
GGCTGCCCGTGCACCGAGGACACCTTCCACATGGCGGCCCATGCGGGACA
CATCGACGTGCTCGACTACCTGCACAGCAAGGGCCCGTGGGTCGCTTCAT
TCTTCCTCTCGCGTGGGGCATTCTTGTCTACCTCGATTCGTGACACTGTC
AGGTACAACCTGAGGCCCTGCCCCTTGTCTTTGCGGATCGTGAAGGAGGT
GCTGTCCTGGGCGCGCAGCAAGGGGTACACTGTCGGATTCGAACCTGAAG
CGTAG
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protein sequence of jgi.p|Trimin1|172139

>Trimin1|172139|e_gw1.89.8.1 ID=Trimin1|172139|e_gw1.89.8.1|Name=jgi.p|Trimin1|172139|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MESLGVLEWAIAAGAPVQNRKGFRLVAVTGSLEMFQYAASLHWHWDYQMM
DALAKHRHLEVLRWALGNGYHSGYGAFEIAARHGHLEVMKCLVDCDDLPV
DDMPADDAQRACVAAAHGGHVRALRWLREQGCAWHADICVAAAIGGEVEC
LQYARADNCPWDERTCEAAAGRTLEAFFVDALPGGSPAMLRWAHENGCPW
DQRTCNAVAAFGQLESLQYAHLHGCEWDEATSIQATKHGHVDVLTWAHDH
GCPCTEDTFHMAAHAGHIDVLDYLHSKGPWVASFFLSRGAFLSTSIRDTV
RYNLRPCPLSLRIVKEVLSWARSKGYTVGFEPEA*
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mRNA from alignment at Contig_89:278202..279206+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12806 ID=mRNA_12806|Name=jgi.p|Trimin1|172139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_89:278202..279206+ (Tribonema minus UTEX_B_3156 )
ATGGAGAGCCTCGGCGTGCTGGAGTGGGCCATTGCTGCGGGAGCTCCGGT
GCAGAATAGGAAAGGCTTCCGACTCGTTGCCGTCACTGGGAGCCTGGAGA
TGTTCCAGTACGCCGCCAGCCTCCACTGGCACTGGGACTATCAAATGATG
GACGCCCTCGCAAAGCACAGACACCTTGAGGTGCTGCGCTGGGCGCTCGG
CAACGGCTACCACTCGGGATATGGCGCCTTCGAGATTGCCGCACGCCACG
GACACCTGGAGGTCATGAAATGCCTGGTCGATTGCGACGACCTGCCAGTG
GACGACATGCCCGCCGACGACGCCCAGCGCGCGTGCGTAGCCGCTGCACA
CGGGGGGCACGTGCGCGCGCTCCGCTGGCTGCGCGAGCAAGGCTGCGCGT
GGCACGCCGACATCTGCGTAGCGGCCGCCATCGGCGGCGAGGTCGAATGC
CTGCAGTATGCCCGCGCCGACAACTGCCCGTGGGATGAGAGGACCTGCGA
GGCGGCCGCGGGCAGGACTTTGGAAGCCTTCTTCGTTGATGCCTTGCCCG
GCGGCAGCCCGGCGATGCTGCGCTGGGCCCACGAGAACGGCTGCCCTTGG
GACCAGCGCACCTGCAACGCGGTGGCGGCGTTTGGTCAGCTCGAATCCCT
GCAGTACGCCCACCTCCACGGCTGCGAATGGGACGAGGCGACCTCCATCC
AAGCGACCAAGCACGGGCACGTCGACGTTCTCACCTGGGCACACGACCAC
GGCTGCCCGTGCACCGAGGACACCTTCCACATGGCGGCCCATGCGGGACA
CATCGACGTGCTCGACTACCTGCACAGCAAGGGCCCGTGGGTCGCTTCAT
TCTTCCTCTCGCGTGGGGCATTCTTGTCTACCTCGATTCGTGACACTGTC
AGGTACAACCTGAGGCCCTGCCCCTTGTCTTTGCGGATCGTGAAGGAGGT
GCTGTCCTGGGCGCGCAGCAAGGGGTACACTGTCGGATTCGAACCTGAAG
CGTAG
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Coding sequence (CDS) from alignment at Contig_89:278202..279206+

>mRNA_12806 ID=mRNA_12806|Name=jgi.p|Trimin1|172139|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_89:278202..279206+ (Tribonema minus UTEX_B_3156 )
ATGGAGAGCCTCGGCGTGCTGGAGTGGGCCATTGCTGCGGGAGCTCCGGT
GCAGAATAGGAAAGGCTTCCGACTCGTTGCCGTCACTGGGAGCCTGGAGA
TGTTCCAGTACGCCGCCAGCCTCCACTGGCACTGGGACTATCAAATGATG
GACGCCCTCGCAAAGCACAGACACCTTGAGGTGCTGCGCTGGGCGCTCGG
CAACGGCTACCACTCGGGATATGGCGCCTTCGAGATTGCCGCACGCCACG
GACACCTGGAGGTCATGAAATGCCTGGTCGATTGCGACGACCTGCCAGTG
GACGACATGCCCGCCGACGACGCCCAGCGCGCGTGCGTAGCCGCTGCACA
CGGGGGGCACGTGCGCGCGCTCCGCTGGCTGCGCGAGCAAGGCTGCGCGT
GGCACGCCGACATCTGCGTAGCGGCCGCCATCGGCGGCGAGGTCGAATGC
CTGCAGTATGCCCGCGCCGACAACTGCCCGTGGGATGAGAGGACCTGCGA
GGCGGCCGCGGGCAGGACTTTGGAAGCCTTCTTCGTTGATGCCTTGCCCG
GCGGCAGCCCGGCGATGCTGCGCTGGGCCCACGAGAACGGCTGCCCTTGG
GACCAGCGCACCTGCAACGCGGTGGCGGCGTTTGGTCAGCTCGAATCCCT
GCAGTACGCCCACCTCCACGGCTGCGAATGGGACGAGGCGACCTCCATCC
AAGCGACCAAGCACGGGCACGTCGACGTTCTCACCTGGGCACACGACCAC
GGCTGCCCGTGCACCGAGGACACCTTCCACATGGCGGCCCATGCGGGACA
CATCGACGTGCTCGACTACCTGCACAGCAAGGGCCCGTGGGTCGCTTCAT
TCTTCCTCTCGCGTGGGGCATTCTTGTCTACCTCGATTCGTGACACTGTC
AGGTACAACCTGAGGCCCTGCCCCTTGTCTTTGCGGATCGTGAAGGAGGT
GCTGTCCTGGGCGCGCAGCAAGGGGTACACTGTCGGATTCGAACCTGAAG
CGTAG
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