mRNA_11055 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172040
Unique NamemRNA_11055
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A835YJP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJP6_9STRA)

HSP 1 Score: 403 bits (1036), Expect = 3.930e-142
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 
Query:    1 TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDLEGAIGGVGEGEGGGCGRGVHRYER 615
            TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDLEGAIGGVGEGEGGGCGRGVHRYER
Sbjct:    1 TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDLEGAIGGVGEGEGGGCGRGVHRYER 205
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A7S2WTE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTE2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.700e-35
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:    1 TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCE 531
            +DWG +      L+ IR  +V LSWP+L RG YGLT K+G+VLV  GLRGA+ L LALI++ TE V+ T    + D +V  +AG ++LTL++ G   +PLI  L +DRV+  +   F  +C V+E + E    +  + + FL +AD+S+VWR++P  +A  YW R+ S ++ L   E
Sbjct:   29 SDWGKLVLLYLALHGIRLFIVTLSWPILKRG-YGLTYKEGLVLVFGGLRGAIGLSLALIIEDTEDVQDT--ETNADRVVFHMAGIALLTLIINGTFMKPLINYLGLDRVSKAESEMFEHSCAVIEAKLEHFVENELKPDRFLGDADYSVVWRYIPVLSAQQYWHRIKSHKLILTQRE 202
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.830e-34
Identity = 72/181 (39.78%), Postives = 112/181 (61.88%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDLE 546
            D+GY+ A    LY+IR  ++  ++P+L  GEY ++  Q +VL HSGLRGA++LILAL+VD        I    RD IV   AG +VL+L+V G +  PL+  L++DR +   +  F   C  LE   +   + L+E +PFL +ADW+LVWR++P   A +Y+ R+  G +TL+  E++D++
Sbjct:  350 DFGYLIALFIALYIIRGLVILAAYPVLRSGEYKISVPQMIVLTHSGLRGAVALILALVVDGVHE----IDQEDRDKIVFLTAGIAVLSLLVNGTTTGPLVRFLKLDRASEASQGVFGQACFALELSMQKQEQLLKE-DPFLCDADWNLVWRYLPLFTAESYFTRLSMGHITLSADELEDIQ 525
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A7S2WUH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.430e-33
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:    1 TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCE 531
            +DWG +      L+ IR  +V LSWP+L RG YGLT K+G+VLV  GLRGA+ L LALI++ TE V+ T    + D +V  +AG ++LTL++ G   +PLI  L +DRV+  +   F  +C V+E + E    +  + + FL +AD+S+VWR++P  +A  YW R+ S ++ L   E
Sbjct:   29 SDWGKLVLLYLALHGIRLFIVTLSWPILKRG-YGLTYKEGLVLVFGGLRGAIGLSLALIIEDTEDVQDT--ETNADRVVFHMAGIALLTLIINGTFMKPLINYLGLDRVSKAESEMFEHSCAVIEAKLEHFVENELKPDRFLGDADYSVVWRYIPVLSAQQYWHRIKSHKLILTQRE 202
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A4D9CXX3_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXX3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.110e-30
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1 
Query:    1 TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVK 537
            TDWG M     ++  +R A V + +P+L RG YG+  +QGVVL +SGLRGA+ L LA+ +         IP   RD I+  VAG S+L+L+V G + +PLI +L +DR +  +   +  T   LE R E     L+  EPFL +ADW +VWR++P      YW R   G   L   E +
Sbjct:  328 TDWGIMVGLYVLMNTLRLAGVIIFFPILRRGSYGIDTRQGVVLAYSGLRGAVGLTLAIAIHQDSQ----IPIATRDRILFHVAGASLLSLLVNGTTLKPLITVLGLDRESPAEVEVYQRTSIALEQRIEDRVMLLKR-EPFLGDADWGVVWRYLPVLTKDVYWHRFRQGHTLLTDWEAE 501
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.900e-27
Identity = 61/180 (33.89%), Postives = 103/180 (57.22%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDL 543
            DWGY+       +++R  ++  S+P+L  G YG   +Q +VL ++GLRGA+ L LAL+V   E+    I     D+++  +AG +++TL++ G +   L++  RMDR T  Q   F   C+ +E++ E     L++   FL +A+W +VWR+VP   +  YW R+  G V LA  E +++
Sbjct:  367 DWGYLVLLWVACHIVRGFVICASYPVLKHG-YGTNWQQMLVLTYAGLRGAVGLTLALVVQENEA----IDDDVGDMVMFMMAGLAIMTLLINGTTCGKLLSYFRMDRATKAQTEIFIRACSAVESKLEHVVEELKKDR-FLGDAEWPIVWRYVPIMTSRVYWHRIRYGSVVLANGEDEEI 540
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.250e-26
Identity = 61/180 (33.89%), Postives = 102/180 (56.67%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDL 543
            +WG +     +L ++R+ +V L  P+L++  YG+T +Q +VL  +GLRGA+ L LALIV   +          RD+++ +VAG + LTL++ G     L++ L +DR T  +   F   C+ +E R E     L + + FL +ADW +VWR++P   +  YW R+  G + L+  E +D+
Sbjct:  262 EWGLLALLYVLLQLVRSVVVLLLLPVLTKWGYGMTHRQLIVLAFAGLRGAVGLTLALIVVEDDR----FSEDVRDLVLFYVAGIAALTLIINGSLCGYLVSALGLDRSTTAETEVFTKACSAIEARLEHKL-DLLKGDRFLGDADWEMVWRYLPVSTSKTYWHRIRHGNINLSVEEEEDI 436
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: W7TNK5_9STRA (Sodium hydrogen exchanger 8 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNK5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.040e-26
Identity = 62/177 (35.03%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEV 534
            DWGY+F F  +L   R   V L +P L+RG YG+  +Q V+L + GLRGA+SL LAL+V   E     IP   R +I+ F AG  +LT+++ G + + ++  L+++  T  ++  +    N++E   E  A  L+ ++ +L +ADW++V+R++P  +   YW RV  G + L   E+
Sbjct:  334 DWGYLFLFYLILNATRFVGVFLFFPTLARGPYGINWRQAVLLSYGGLRGAVSLTLALVVSQEEG----IPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVFAGKLK-NDKYLGSADWNVVYRYLPVFSPQIYWHRVREGHICLDEAEI 505
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: A0A4D9CZA9_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZA9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.920e-26
Identity = 62/177 (35.03%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEV 534
            DWGY+F F  +L   R   V L +P L+RG YG+  +Q V+L + GLRGA+SL LAL+V   E     IP   R +I+ F AG  +LT+++ G + + ++  L+++  T  ++  +    N++E   E  A  L+ ++ +L +ADW++V+R++P  +   YW RV  G + L   E+
Sbjct:  334 DWGYLFLFYLILNATRFVGVFLFFPTLARGPYGINWRQAVLLSYGGLRGAVSLTLALVVSQEEG----IPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVFAGKLK-NDKYLGSADWNVVYRYLPVFSPQIYWHRVREGHLCLDEAEI 505
[Close]
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.410e-25
Identity = 59/180 (32.78%), Postives = 100/180 (55.56%), Query Frame = 1 
Query:    4 DWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRGALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPLIALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLVWRFVPAPNAYAYWGRVMSGRVTLAPCEVKDL 543
            DWGY+       +++R  ++  S+P+L  G YG   +Q +VL ++G+RG   L L LIV   E+    I     D+++  +AG +++TL++ G +   L++  RMDR T  Q   F   C+ +E++ E     L++   FL +A+W +VWR+VP   +  YW R+  G V LA  E +++
Sbjct:  273 DWGYLVLLWVACHIVRGFVICASYPVLKHG-YGTNWQQKLVLTYAGVRGGGGLTLGLIVQENEA----IDDDVGDMVMFMIAGLAIMTLLINGTTCGKLLSYFRMDRATKAQTEIFIRACSAVESKLEHVVEELKKDR-FLGDAEWPVVWRYVPIMTSRVYWHRIRYGSVVLAKGEDEEI 446
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJP6_9STRA3.930e-142100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WTE2_9STRA6.700e-3541.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5LPB6_9PHAE2.830e-3439.78Na_H_Exchanger domain-containing protein n=2 Tax=E... [more]
A0A7S2WUH1_9STRA4.430e-3341.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CXX3_9STRA9.110e-3039.11Na_H_Exchanger domain-containing protein n=2 Tax=M... [more]
A0A6H5L0H9_9PHAE9.900e-2733.89Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LKR2_ECTSI1.250e-2633.89Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
W7TNK5_9STRA3.040e-2635.03Sodium hydrogen exchanger 8 n=1 Tax=Nannochloropsi... [more]
A0A4D9CZA9_9STRA6.920e-2635.03Na_H_Exchanger domain-containing protein n=1 Tax=N... [more]
D7G372_ECTSI4.410e-2532.78Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:413085..415065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172040|e_gw1.88.96.1
Descriptionpotassium:proton antiporter activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0025@1|root,KOG1965@2759|Eukaryota
Evalue2.05e-27
Seed ortholog2880.D8LKR2
Hectar predicted targeting categorysignal peptide
TranscriptId172362
TrackFilteredModels1
ProteinId172040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172040gene_11055Tribonema minus UTEX_B_3156 geneContig_88 413085..415065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11055_1exon_11055_1Tribonema minus UTEX_B_3156 exonContig_88 413085..413291 +
exon_11055_2exon_11055_2Tribonema minus UTEX_B_3156 exonContig_88 414655..415065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11055CDS_11055Tribonema minus UTEX_B_3156 CDSContig_88 413085..413291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172040Trimin1|172040|e_gw1.88.96.1Tribonema minus UTEX_B_3156 polypeptideContig_88 413085..415065 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11055 ID=mRNA_11055|Name=jgi.p|Trimin1|172040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_88:413085..415065+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCGACTGGGGCTACATGTTTGCCTTTGTGGCCATGCTCTACGTCATACG
CGCCGCGCTGGTAGCCTTGTCGTGGCCGCTGCTGAGCCGTGGCGAGTACG
GCCTCACGCCCAAACAGGGCGTCGTGCTCGTGCACAGCGGGCTGCGCGGC
GCGCTGTCGCTCATCCTGGCGCTGATCGTCGACTCCACAGAATCGGTGCG
TATCACTATCCCCGCGCACCACCGCGACATCATCGTCCTCTTCGTCGCCG
GCACGTCAGTGCTCACCCTCGTGGTGCAGGGCTGCAGCGCGCGCCCGCTC
ATTGCTCTGCTGCGCATGGATCGGGTCACCGCCACGCAAGAGCGCGCCTT
CGCAGCCACGTGCAACGTCCTCGAGACGCGCGCAGAGAGCGCCGCCAGGC
ACCTGCGCGAGTCGGAGCCGTTCCTCAAGAACGCGGACTGGTCCTTGGTC
TGGAGATTTGTCCCCGCGCCGAATGCGTATGCGTATTGGGGGAGGGTGAT
GTCGGGGCGTGTGACGCTTGCGCCCTGTGAGGTGAAGGATTTGGAGGGGG
CGATTGGGGGGGTGGGGGAGGGGGAGGGCGGGGGCTGCGGCCGTGGTGTG
CACAGGTATGAGCGCTGA
back to top

protein sequence of jgi.p|Trimin1|172040

>Trimin1|172040|e_gw1.88.96.1 ID=Trimin1|172040|e_gw1.88.96.1|Name=jgi.p|Trimin1|172040|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp
TDWGYMFAFVAMLYVIRAALVALSWPLLSRGEYGLTPKQGVVLVHSGLRG
ALSLILALIVDSTESVRITIPAHHRDIIVLFVAGTSVLTLVVQGCSARPL
IALLRMDRVTATQERAFAATCNVLETRAESAARHLRESEPFLKNADWSLV
WRFVPAPNAYAYWGRVMSGRVTLAPCEVKDLEGAIGGVGEGEGGGCGRGV
HRYER*
back to top

mRNA from alignment at Contig_88:413085..415065+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11055 ID=mRNA_11055|Name=jgi.p|Trimin1|172040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1981bp|location=Sequence derived from alignment at Contig_88:413085..415065+ (Tribonema minus UTEX_B_3156 )
ACCGACTGGGGCTACATGTTTGCCTTTGTGGCCATGCTCTACGTCATACG
CGCCGCGCTGGTAGCCTTGTCGTGGCCGCTGCTGAGCCGTGGCGAGTACG
GCCTCACGCCCAAACAGGGCGTCGTGCTCGTGCACAGCGGGCTGCGCGGC
GCGCTGTCGCTCATCCTGGCGCTGATCGTCGACTCCACAGAATCGGTGCG
TATCACTGTAGTACTATTGTTGTTCACGAAACTGTTGTGCGCGTTGCAGT
GGCGCAATTGTAATTGGATTTCAAAATGGCCTCACGCCGGAACAGGGCGT
CGTGCTCGTGCACAGCGGGCTGCGTGGCGCGCTGTCGCTCATCCTGGCGC
TCATCGTCGACTCCACAGAATCGGTGCGTGCTGTTGTTGTTTACAAAGTA
CCATAGACACAGTTTTGTTGTTGTTTTAAAATAGGTACCGTAGACAAGGT
TGTGCGCGTTGCGGTAAGGAAATTTGATCATCCTGGCACTGATTGTGGAC
CCCACGGAATCGGTGTTGTTCAGAGTACCCTAGACACTGTTGTATGCATG
CACACGTCGTTCATCTATGATGGTAGCGCATAAGTTGTTGGTGTGCATTG
CAGTACAGTGGCCGTGGGAGAAGGTTGACTGCACGTCTACGCCTAACGCG
AGCACGCGGGCTTTGTGGAGCACTGTTGCTTGCCGGCGCTCACCGTCGAG
TCCACCGGATCGCTGCATATTGTTGTCGTTCGCGAAGTACCGCTGACACT
GGTGTGCGCGTTGCCGTAAAACAATTGTGACTGAAGTTTGACTCCAGGGC
CACGCCCAAGCAGGCGTCGTGCTCGTACACAGTTGCCTCCGTGGCGCGCG
CTGTCGTTCATTGTGGCGCTCATTGCCAACTCTACAGAGCTGGTGCGTGT
GTACTATGCAGTGCTGTCGAACGCAAGCGCACGACTCAAGTTCATCACTG
AAAAATATTCAGTGAAGGTCGGCAAGCCCTGGTGCTCATTGTGGCCGGTG
CGTACTGGGCGCCTCGATCGCCCGGCTGAGCTTCACTGTACATGCGCGCC
GGCCCTGTCTCAGACCCTACCTCCCTGCCTGTCCGCAGCACACACACTAA
CCCTAGCCCCAATTCTAGTAGCAAACCCACTTTAACCCCTACCTCAAACC
CTACCTTCCAACCCTACCTCAAACACTACCTTCCATCCTGCCCTAGCCCT
GACTATAGGCACGCGCCTCGTCCGCGCGCGTGCAGATCCCCGCGCACCAC
TGTGACATCATCGTCCTCTTCGTCGCCGGCACATCAGTGCTCACCCTCGT
GGTGCAGGGCTGCACAAACCCTGCTCTCAAACCCTATCTCAAACCCTGCC
TCAAACCCTACCCCCCCCCCCCTTCCCTCATACCCTAACCCTACTTGTAC
ACACGCGCCTCGTCCGCGCGCGCAGATCCCCGCGCACCACCGCGACATCA
TCGTCCTCTTCGTCGCCGGCACGTCAGTGCTCACCCTGGTGGTGCAGGGC
TGCACAAACCCCGATCTCAAACCCTACTTCAAGCCACTCCCTAACCCTAA
CCCTGCTTGTACGCGTGCAGATCCCCGCGCACCACCGCGACATCATCGTC
CTCTTCGTCGCCGGCACGTCAGTGCTCACCCTCGTGGTGCAGGGCTGCAG
CGCGCGCCCGCTCATTGCTCTGCTGCGCATGGATCGGGTCACCGCCACGC
AAGAGCGCGCCTTCGCAGCCACGTGCAACGTCCTCGAGACGCGCGCAGAG
AGCGCCGCCAGGCACCTGCGCGAGTCGGAGCCGTTCCTCAAGAACGCGGA
CTGGTCCTTGGTCTGGAGATTTGTCCCCGCGCCGAATGCGTATGCGTATT
GGGGGAGGGTGATGTCGGGGCGTGTGACGCTTGCGCCCTGTGAGGTGAAG
GATTTGGAGGGGGCGATTGGGGGGGTGGGGGAGGGGGAGGGCGGGGGCTG
CGGCCGTGGTGTGCACAGGTATGAGCGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_88:413085..415065+

>mRNA_11055 ID=mRNA_11055|Name=jgi.p|Trimin1|172040|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_88:413085..415065+ (Tribonema minus UTEX_B_3156 )
ACCGACTGGGGCTACATGTTTGCCTTTGTGGCCATGCTCTACGTCATACG
CGCCGCGCTGGTAGCCTTGTCGTGGCCGCTGCTGAGCCGTGGCGAGTACG
GCCTCACGCCCAAACAGGGCGTCGTGCTCGTGCACAGCGGGCTGCGCGGC
GCGCTGTCGCTCATCCTGGCGCTGATCGTCGACTCCACAGAATCGGTGCG
TATCACTATCCCCGCGCACCACCGCGACATCATCGTCCTCTTCGTCGCCG
GCACGTCAGTGCTCACCCTCGTGGTGCAGGGCTGCAGCGCGCGCCCGCTC
ATTGCTCTGCTGCGCATGGATCGGGTCACCGCCACGCAAGAGCGCGCCTT
CGCAGCCACGTGCAACGTCCTCGAGACGCGCGCAGAGAGCGCCGCCAGGC
ACCTGCGCGAGTCGGAGCCGTTCCTCAAGAACGCGGACTGGTCCTTGGTC
TGGAGATTTGTCCCCGCGCCGAATGCGTATGCGTATTGGGGGAGGGTGAT
GTCGGGGCGTGTGACGCTTGCGCCCTGTGAGGTGAAGGATTTGGAGGGGG
CGATTGGGGGGGTGGGGGAGGGGGAGGGCGGGGGCTGCGGCCGTGGTGTG
CACAGGTATGAGCGCTGA
back to top