mRNA_11060 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A836C8Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z9_9STRA) HSP 1 Score: 364 bits (934), Expect = 3.600e-124 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1
Query: 1 MDAQECVRVSARVGGVVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYEXXXXXXXXXXXXXXVWKDAREQXXXXXXXXXXXXXXXXXXLDDPPLSTAAATAVQRQMCNTXXXXXXXXXXXXXXDFLYANGSS 747
MDAQECVRVSARVGGVVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYEXXXXXXXXXXXXXXVWKDAREQXXXXXXXXXXXXXXXXXXLDDPPLSTAAATAVQRQMCNTXXXXXXXXXXXXXXDFLYANGSS
Sbjct: 1 MDAQECVRVSARVGGVVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYEXXXXXXXXXXXXXXVWKDAREQXXXXXXXXXXXXXXXXXXLDDPPLSTAAATAVQRQMCNTXXXXXXXXXXXXXXDFLYANGSS 249
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: M7BH84_CHEMY (Radial spoke head 10 like protein B n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7BH84_CHEMY) HSP 1 Score: 98.6 bits (244), Expect = 2.050e-19 Identity = 54/147 (36.73%), Postives = 71/147 (48.30%), Query Frame = 1
Query: 46 VVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGN 486
+++ Y+G HG Y GEG A F+ N Y G F + G + WPD GS YEGEVK+ +RHG G++K G + Y G W G RHG GT YY+ + Y G W NN R+G G+ Y +GN
Sbjct: 759 LIVENYEGEK-VHGLYDGEGVAHFQGGNTYRGNFVKNVQMYNGRYTWPD------------------------GSMYEGEVKNAVRHGFGMYKCGTHPVSYIGQWCEGKRHGKGTIYYNQEGTSWYEGDWVNNIRAGWGIRCYKSGN 880
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A6G1R8W9_9GRUI (Radial spoke head component 1 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1R8W9_9GRUI) HSP 1 Score: 86.7 bits (213), Expect = 1.350e-16 Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 265 GSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYE 495
GSSYEG + +GLRHG G F+SG + Y G W G RHG GT YYD ++ Y G W NN R G G Y +GN YE
Sbjct: 11 GSSYEGSINNGLRHGFGFFRSGTHPVSYIGYWCKGKRHGKGTVYYDQERTSWYSGDWVNNIREGWGTRCYKSGNIYE 87
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: UPI001CC720C8 (LOW QUALITY PROTEIN: radial spoke head 10 homolog B2 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC720C8) HSP 1 Score: 87.0 bits (214), Expect = 1.570e-15 Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 1
Query: 46 VVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGN 486
++ Y+G G Y GEG A F+ + Y G F + G + WPD GS+YEGEV +G+RHG G+FK + Y G W +G RHG G+ YY+ D Y G W N + G G+ Y +GN
Sbjct: 124 LIFCSYEGEK-VRGLYEGEGVAHFEGGSEYRGDFVKNIPMYHGTYTWPD------------------------GSTYEGEVTNGVRHGFGMFKCSTQPISYIGQWCHGKRHGKGSIYYNQDGTSWYEGDWVYNIKKGWGIRCYTSGN 245
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A3Q4AHB1_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q4AHB1_MOLML) HSP 1 Score: 85.1 bits (209), Expect = 4.410e-15 Identity = 51/143 (35.66%), Postives = 63/143 (44.06%), Query Frame = 1
Query: 91 YTGEGSAAFKNENVYS---------GTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTY 492
+ G G A F+ +VY G F M G+G + W D GSSYEGEV +G+RHGTG +K + Y G W G RHG G YY+ DK Y G W N R G G+ Y +GN Y
Sbjct: 1 FQGPGVAYFEGGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLD------------------------GSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQDKTSWYNGDWVKNSREGWGMRRYPSGNIY 119
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A3Q3VNT6_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3VNT6_MOLML) HSP 1 Score: 85.1 bits (209), Expect = 4.800e-15 Identity = 51/143 (35.66%), Postives = 63/143 (44.06%), Query Frame = 1
Query: 91 YTGEGSAAFKNENVYS---------GTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTY 492
+ G G A F+ +VY G F M G+G + W D GSSYEGEV +G+RHGTG +K + Y G W G RHG G YY+ DK Y G W N R G G+ Y +GN Y
Sbjct: 1 FQGPGVAYFEGGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLD------------------------GSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQDKTSWYNGDWVKNSREGWGMRRYPSGNIY 119
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A7L3IFL0_9PASS (R10B2 protein (Fragment) n=1 Tax=Pardalotus punctatus TaxID=254575 RepID=A0A7L3IFL0_9PASS) HSP 1 Score: 84.7 bits (208), Expect = 8.860e-15 Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 286 VKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYEXXXXXXXXXXXXXXVWKDAREQ 561
+KDGLRHG GIF+SG + Y G W NG RHG G YYD + Y G+W NN + G G+ Y +GNTYEXXXXXXXX VW A ++
Sbjct: 75 IKDGLRHGFGIFRSGTRPISYVGDWCNGKRHGKGVIYYDQEHTSWYSGEWVNNVKEGWGMRRYRSGNTYEXXXXXXXXHGHGKMVWVTANQE 166
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A7K6EXL7_9PASS (R10B2 protein (Fragment) n=1 Tax=Grantiella picta TaxID=266360 RepID=A0A7K6EXL7_9PASS) HSP 1 Score: 83.6 bits (205), Expect = 2.260e-14 Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 286 VKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTYEXXXXXXXXXXXXXXVWKDAREQ 561
+KDGLRHG GIF+SG + Y G W NG RHG G YYD + Y G+W NN + G G+ Y +GNTYEXXXXXXXX +W A ++
Sbjct: 145 IKDGLRHGFGIFRSGTCPVSYVGDWCNGKRHGKGVIYYDEEHTSWYSGEWVNNVKEGWGMRRYRSGNTYEXXXXXXXXHGHGKMIWVTANQE 236
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: UPI0004F0F3AD (radial spoke head 10 homolog B-like n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0F3AD) HSP 1 Score: 83.2 bits (204), Expect = 3.060e-14 Identity = 69/149 (46.31%), Postives = 81/149 (54.36%), Query Frame = 1
Query: 46 VVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGNTY 492
V++ Y+G H Y GEG A F+ + Y G F+ G XXXXXXXXXXXXXXXXXXX +K+GLRHG GIFKSG +CY G W G RHG G YYD + Y G W NN R G G+ Y +GN Y
Sbjct: 97 VIVKSYEGEK-VHDLYEGEGFACFEGGDTYKGMFSQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XIKEGLRHGFGIFKSGTRPICYVGDWCKGKRHGKGIIYYDEELSSWYSGDWVNNVRGGWGIRCYKSGNIY 243
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Match: A0A8C6S1Q6_NANGA (Radial spoke head 10 homolog B (Chlamydomonas) n=3 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6S1Q6_NANGA) HSP 1 Score: 82.8 bits (203), Expect = 4.170e-14 Identity = 51/157 (32.48%), Postives = 71/157 (45.22%), Query Frame = 1
Query: 46 VVLSKYDGALDEHGCYTGEGSAAFKNENVY----------SGTFANGMMCGKGAFKWPDRSTAYXXXXXXXXXXXXXXXXXXXGSSYEGEVKDGLRHGTGIFKSGGGELCYEGCWANGTRHGDGTQYYDSDKRCKYIGQWQNNKRSGRGVMAYANGN 486
+++ Y+G G Y GEG A F+ N Y G F + G + WPD GS+YEGEV++GLR+G G+FK + Y G W +G RHG G+ YY+ + Y G W N ++G GV Y +GN
Sbjct: 80 LIVESYEGEK-VRGLYEGEGFAVFQGGNTYHVSHKQGWEEGGDFVKNIPTNHGVYTWPD------------------------GSTYEGEVRNGLRNGFGMFKCSTQSVSYIGHWCHGKRHGKGSIYYNQEGTSWYEGDWVYNIKTGWGVRRYKSGN 211 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172017 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11060 ID=mRNA_11060|Name=jgi.p|Trimin1|172017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_88:461240..462079+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACGCGCAGGAATGCGTGAGAGTGAGTGCTAGGGTGGGAGGAGTTGTback to top protein sequence of jgi.p|Trimin1|172017 >Trimin1|172017|e_gw1.88.66.1 ID=Trimin1|172017|e_gw1.88.66.1|Name=jgi.p|Trimin1|172017|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp MDAQECVRVSARVGGVVLSKYDGALDEHGCYTGEGSAAFKNENVYSGTFAback to top mRNA from alignment at Contig_88:461240..462079+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11060 ID=mRNA_11060|Name=jgi.p|Trimin1|172017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_88:461240..462079+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_88:461240..462079+ >mRNA_11060 ID=mRNA_11060|Name=jgi.p|Trimin1|172017|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_88:461240..462079+ (Tribonema minus UTEX_B_3156 )back to top |