mRNA_11040 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141632
Unique NamemRNA_11040
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A835YJN6_9STRA (ATPase_AAA_core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN6_9STRA)

HSP 1 Score: 359 bits (922), Expect = 2.140e-125
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR
Sbjct:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 186          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A835ZFP4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP4_9STRA)

HSP 1 Score: 256 bits (654), Expect = 5.370e-76
Identity = 135/160 (84.38%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGY-ADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAED 477
            MGRMFKELGVLQSDEVI  SPADFTTGFAGGQAAIRTKEMLNKALGR LFIDEAYGLNPQR+ SA IMQEVVDQIVQSLTDERF+GKLVV++AGY A D++ALM ANAGLASRFGTTIHFPDF   DAAE LRR LRS+RMGCLELS +AA ALP MA+D
Sbjct:  761 MGRMFKELGVLQSDEVISCSPADFTTGFAGGQAAIRTKEMLNKALGRTLFIDEAYGLNPQRALSAGIMQEVVDQIVQSLTDERFRGKLVVILAGYPAADMDALMTANAGLASRFGTTIHFPDFTALDAAEVLRRALRSERMGCLELSSAAAEALPTMAQD 920          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: D8LJR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.070e-47
Identity = 94/187 (50.27%), Postives = 128/187 (68.45%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSA-AIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +GRMFK+L V+ SD+V+  SP+DFTTGF G QAA++TKE+L+KA+G+VLFIDEAYGLNP+      + MQEVVDQ+ Q LTD+++KG +VVVVAGYA DI+ LM +N GLASRF  T+HFP+F  +D    L   L+  RM   +L+P A  AL  +   +     F NGR++ +    +F  +  R
Sbjct: 2431 VGRMFKQLSVIHSDDVVSCSPSDFTTGFIG-QAALKTKEILDKAIGKVLFIDEAYGLNPRHGGGTWSFMQEVVDQLTQCLTDDKYKGNMVVVVAGYAHDIDELMESNPGLASRFPETLHFPNFGVDDCCRMLESSLK--RMFSTDLAPEATGALRGLLLPVLQAPRFGNGRTITDLTKHIFTEIGMR 2614          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A7S1DUH3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DUH3_HEMAN)

HSP 1 Score: 158 bits (400), Expect = 7.530e-45
Identity = 91/186 (48.92%), Postives = 116/186 (62.37%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            MGRMF+  G+L +DEV+ TS +DF TG+ G QA   T +++ KA G+VLFIDEAY LNP+       M EVVD+IV+SLT E  K K+VV++AGY  D++ +++ N G+ SRF   I FPD   E AA  L   LRSD    L+  P   AAL  +A  LAA   FANGR V  W+  VF  VA R
Sbjct:   73 MGRMFRSFGLLPTDEVVETSASDFVTGYVG-QAGKTTADIMTKAKGKVLFIDEAYQLNPRIG--GGYMSEVVDEIVKSLTSENLKNKMVVILAGYESDVDDMLKVNQGMRSRFSEKIAFPDISAETAAAMLTSKLRSDHGLTLDPPPEDTAALLGLAGRLAAAPNFANGRDVETWSKRVFQHVASR 255          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A835SB85_CHLIN (RabBD domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SB85_CHLIN)

HSP 1 Score: 165 bits (417), Expect = 9.570e-44
Identity = 94/186 (50.54%), Postives = 125/186 (67.20%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +G +F+ LG+L S EV+  S +DF TG+   QA+ +T+E+  KA+G VLFIDEAY LNP++    A MQE +D++VQ LT+  + GK+VV++AGY ++IE LM  N GL SRF   +HFPDF   DAA+ L   LR +    LEL   AAAALP MA+DLAA   +ANGR V  WA  +FAA + R
Sbjct: 2406 VGLLFESLGLLASSEVVSCSASDFVTGYVN-QASGKTREVFAKAVGGVLFIDEAYRLNPKKG--GAFMQEALDEMVQLLTEPAYMGKMVVILAGYDNEIEELMSVNPGLKSRFSQRLHFPDFSPADAAQLLALQLRKEYG--LELGGDAAAALPGMAQDLAAAPNWANGRDVVTWAKRIFAAYSTR 2586          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A835WSI6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WSI6_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 6.130e-43
Identity = 93/186 (50.00%), Postives = 119/186 (63.98%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +G +F+ LG+L S EV+C S  DF TG+   QA+ +T+E+  KA+G VLFIDEAY LNP+       MQE +D++VQ LT+  + GK+VV++AGY  +IE LM  N GL SRF   +HFPDF   DAA+ L   LR +    LEL   AA ALP MAE LAA   +ANGR V  WA   FAA + R
Sbjct: 2462 VGLLFESLGLLASSEVVCCSANDFVTGYVN-QASGKTREIFAKAVGGVLFIDEAYRLNPKNG--GPFMQEALDEMVQLLTEPTYMGKMVVILAGYDKEIEELMGVNPGLKSRFSQRLHFPDFSPADAAQLLALQLRKEY--ALELDAGAAEALPGMAEQLAAAPNWANGRDVGTWAKRAFAAYSSR 2642          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A835WQ62_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WQ62_9CHLO)

HSP 1 Score: 160 bits (405), Expect = 3.930e-42
Identity = 91/186 (48.92%), Postives = 119/186 (63.98%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +G +F+ LG+L S EV+C S  DF TG+   QA+ +T+E+  KA+G VLFIDEAY LNP++      MQE +D++VQ LT+  + GK+VV++AGY  +IE LM  N GL SRF   +HFPDF   DAA+ L   LR +    LEL   AA ALP M + LAA   +ANGR V  WA   FAA + R
Sbjct: 2443 VGLLFESLGLLASSEVVCCSANDFVTGYVN-QASGKTREIFAKAVGGVLFIDEAYRLNPKKG--GQFMQEALDEMVQLLTEPTYMGKMVVILAGYDKEIEELMGVNPGLKSRFSQRLHFPDFSPADAAQLLALQLRKEY--ALELDAGAAEALPGMTKQLAAAPNWANGRDVGTWAKRAFAAYSSR 2623          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A2K3DU35_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DU35_CHLRE)

HSP 1 Score: 159 bits (402), Expect = 9.930e-42
Identity = 91/186 (48.92%), Postives = 123/186 (66.13%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +G +F+ LG+L + EV+  S +DF TG+   QA+ +T+E+  KA+G VLFIDEAY LNP++      MQE +D++VQ LT+  + GK+VV++AGY ++IE LM  N GL SRF   +HFPDF   DAA+ L   LR +    LEL   AA ALP MA++LAA   +ANGR V  WA  VFAA + R
Sbjct: 2396 VGLLFESLGLLATSEVVSCSASDFVTGYVN-QASGKTREVFAKAVGGVLFIDEAYRLNPKKG--GPFMQEALDEMVQLLTEPAYMGKMVVILAGYDNEIEELMSVNPGLKSRFSQRLHFPDFTPADAAQLLVLQLRKEYG--LELGGGAAEALPGMAQELAAAPNWANGRDVGTWAKRVFAAYSSR 2576          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A2K3DU41_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DU41_CHLRE)

HSP 1 Score: 155 bits (393), Expect = 1.610e-40
Identity = 89/186 (47.85%), Postives = 122/186 (65.59%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR 558
            +G +F+ LG+L + EV+  S +DF TG+   QA+ +T+E+  KA+G VLFIDEAY L+P++      MQE +D++VQ LT+  + GK+VV++AGY ++IE LM  N GL SRF   +HFPDF   DAA+ L   LR +    LEL   A  ALP MA++LAA   +ANGR V  WA  VFAA + R
Sbjct: 2412 VGLLFESLGLLATSEVVSCSASDFVTGYVN-QASGKTREVFAKAVGGVLFIDEAYRLSPKKG--GPFMQEALDEMVQLLTEPAYMGKMVVILAGYDNEIEELMSVNPGLKSRFSQRLHFPDFTPADAAQLLVLQLRKEYG--LELGGGAVEALPGMAQELAAAPNWANGRDVGTWAKRVFAAYSSR 2592          
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Match: A0A8J5X9I6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X9I6_DIALT)

HSP 1 Score: 155 bits (391), Expect = 2.990e-40
Identity = 89/182 (48.90%), Postives = 118/182 (64.84%), Query Frame = 1
Query:    1 MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLFIDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIEALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAAAALPRMAEDLAATHGFANGRSVNEWANGVFAA 546
            MG +F  LG+L SD+V   S +DF TGF G QAA +T+++   ALG +LFIDEAY L+P+ S     MQEVVD+IV  LT+  F+GK+VV+ AGYAD++EA++ AN+GL SR    IHF D   +DA   L   ++S R   LEL+  A A LP +A  L A  G++NGR V  WA  +F A
Sbjct: 2424 MGTLFHRLGLLPSDDVKQHSASDFCTGFVG-QAASKTRKLFEAALGGILFIDEAYRLHPKHSAGGGFMQEVVDEIVNLLTEPAFQGKMVVIFAGYADEMEAMLDANSGLRSRVTGRIHFADLALDDACALL---VKSVRAKGLELNAEARAELPTLARALIAAPGWSNGRDVATWAKAIFQA 2601          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141632 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJN6_9STRA2.140e-125100.00ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
A0A835ZFP4_9STRA5.370e-7684.38P-loop containing nucleoside triphosphate hydrolas... [more]
D8LJR0_ECTSI3.070e-4750.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1DUH3_HEMAN7.530e-4548.92Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835SB85_CHLIN9.570e-4450.54RabBD domain-containing protein n=1 Tax=Chlamydomo... [more]
A0A835WSI6_9CHLO6.130e-4350.00Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835WQ62_9CHLO3.930e-4248.92Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2K3DU35_CHLRE9.930e-4248.92Uncharacterized protein n=3 Tax=Chlamydomonas rein... [more]
A0A2K3DU41_CHLRE1.610e-4047.85Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J5X9I6_DIALT2.990e-4048.90Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:290285..291660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141632|gw1.88.77.1
DescriptionNfx1-type zinc finger-containing protein
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0464@1|root,COG1112@1|root,KOG0730@2759|Eukaryota,KOG1807@2759|Eukaryota
Evalue5.03e-48
Seed ortholog2880.D8LJR0
Hectar predicted targeting categoryother localisation
TranscriptId141954
TrackFilteredModels1
ProteinId141632
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141632gene_11040Tribonema minus UTEX_B_3156 geneContig_88 290285..291660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141632Trimin1|141632|gw1.88.77.1Tribonema minus UTEX_B_3156 polypeptideContig_88 290285..291660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11040_2exon_11040_2Tribonema minus UTEX_B_3156 exonContig_88 290285..290676 -
exon_11040_1exon_11040_1Tribonema minus UTEX_B_3156 exonContig_88 291495..291660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11040CDS_11040Tribonema minus UTEX_B_3156 CDSContig_88 291495..291660 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Trimin1|141632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_88:290285..291660- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCATGTTCAAGGAGCTCGGTGTACTTCAAAGCGATGAAGTCAT
ATGCACGTCGCCGGCAGACTTCACCACGGGGTTCGCAGGGGGGCAAGCCG
CCATCCGCACCAAAGAGATGCTCAACAAGGCCCTGGGGAGAGTGCTGTTC
ATCGACGAGGCATATGGGCTCAATCCGCAGCGCAGCCCCTCGGCGGCCAT
CATGCAGGAGGTCGTGGACCAGATCGTCCAGTCGCTCACGGACGAGCGCT
TCAAGGGCAAGCTCGTCGTCGTGGTGGCGGGCTACGCGGACGACATCGAG
GCCCTCATGCGTGCCAACGCGGGCCTCGCCAGCCGCTTCGGCACCACAAT
CCACTTCCCCGACTTCAAAGGTGAAGATGCCGCAGAGGCCCTGCGGCGCC
TGCTGCGATCTGACAGAATGGGGTGCCTCGAGCTGTCGCCGAGCGCTGCT
GCGGCGCTGCCGCGCATGGCCGAGGACCTCGCTGCGACGCACGGCTTTGC
CAACGGGCGCAGCGTAAACGAGTGGGCGAATGGCGTTTTCGCGGCCGTCG
CTGACCGC
back to top

protein sequence of jgi.p|Trimin1|141632

>Trimin1|141632|gw1.88.77.1 ID=Trimin1|141632|gw1.88.77.1|Name=jgi.p|Trimin1|141632|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MGRMFKELGVLQSDEVICTSPADFTTGFAGGQAAIRTKEMLNKALGRVLF
IDEAYGLNPQRSPSAAIMQEVVDQIVQSLTDERFKGKLVVVVAGYADDIE
ALMRANAGLASRFGTTIHFPDFKGEDAAEALRRLLRSDRMGCLELSPSAA
AALPRMAEDLAATHGFANGRSVNEWANGVFAAVADR
back to top

mRNA from alignment at Contig_88:290285..291660-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Trimin1|141632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1376bp|location=Sequence derived from alignment at Contig_88:290285..291660- (Tribonema minus UTEX_B_3156 )
ATGGGCCGCATGTTCAAGGAGCTCGGTGTACTTCAAAGCGATGAAGTCAT ATGCACGTCGCCGGCAGACTTCACCACGGGGTTCGCAGGGGGGCAAGCCG CCATCCGCACCAAAGAGATGCTCAACAAGGCCCTGGGGAGAGTGCTGTTC ATCGACGAGGCATATGGTGGGTGGATGCCATTGGGTTGATGTGCAATTGA CACTCACGCCTGCTTGTCATGAGCTTGCGGAGCGCTGTTGCAAGTGCCTG TAACAATGCTCAGCAATGGGCCTTCAGGGGTGTTTACATGCTGACCTCCT CTTTGTAGAACGGTTCGGTGAAGCCTTCTGGTGTTTTGAGCAGTGGCGCT GTAACAGAAAGTACTGATTTTCACAAAGCACACTGAAGCAATTTGTGCAG CAGGGTGCTCAGCAACACTACCGCTGCATGTCTACTTGCAACAATGGTGT TTTCCAAGAAGCTGGGGCACTGCACTTGCCAATACATGAGAGTTCACCTC ATGTACACATGGACAACTCTTGCAAATATTACAAGAGTTCGGAGCAGCCA TGTAGGGGGACATTTCCTCCTCACCTCCTGTACTTCTTACTGCAACATGC AATGCCACCCATCAATTGTCCGCCTCCCCAGTTGTACAGCAAGCTGCGCC CCGGTGCAGTAAACCTGCACGCCCTGGGCATGCGCTACACTTTGGGCAAC ACCTCCTCGCCGTATGACCTCATTGATCACCGATTGCTGCATGTACACGG CAGACCAAAGTATCCCGCACATCATTACAGTGCCTAAACCTCAAGTCCTG CCCTGACATGTGACGCTCCAATGCTTGCATCGCATGCCACGGCTCAACCC AGTGCTAATCTTTCAAAAGTCAAAACTGATCCATCAGATGCCTGCACATG CCGAAACTGTGCAAGAGAAACACCGCCTGAACTTCATGCCCGTGCCCTAA CATGTGACGCTCCAACGCTTGCGCCGCGCGGCAGGGCTCAATCCGCAGCG CAGCCCCTCGGCGGCCATCATGCAGGAGGTCGTGGACCAGATCGTCCAGT CGCTCACGGACGAGCGCTTCAAGGGCAAGCTCGTCGTCGTGGTGGCGGGC TACGCGGACGACATCGAGGCCCTCATGCGTGCCAACGCGGGCCTCGCCAG CCGCTTCGGCACCACAATCCACTTCCCCGACTTCAAAGGTGAAGATGCCG CAGAGGCCCTGCGGCGCCTGCTGCGATCTGACAGAATGGGGTGCCTCGAG CTGTCGCCGAGCGCTGCTGCGGCGCTGCCGCGCATGGCCGAGGACCTCGC TGCGACGCACGGCTTTGCCAACGGGCGCAGCGTAAACGAGTGGGCGAATG GCGTTTTCGCGGCCGTCGCTGACCGC
back to top

Coding sequence (CDS) from alignment at Contig_88:290285..291660-

>mRNA_11040 ID=mRNA_11040|Name=jgi.p|Trimin1|141632|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_88:290285..291660- (Tribonema minus UTEX_B_3156 )
ATGGGCCGCATGTTCAAGGAGCTCGGTGTACTTCAAAGCGATGAAGTCAT
ATGCACGTCGCCGGCAGACTTCACCACGGGGTTCGCAGGGGGGCAAGCCG
CCATCCGCACCAAAGAGATGCTCAACAAGGCCCTGGGGAGAGTGCTGTTC
ATCGACGAGGCATATGGGCTCAATCCGCAGCGCAGCCCCTCGGCGGCCAT
CATGCAGGAGGTCGTGGACCAGATCGTCCAGTCGCTCACGGACGAGCGCT
TCAAGGGCAAGCTCGTCGTCGTGGTGGCGGGCTACGCGGACGACATCGAG
GCCCTCATGCGTGCCAACGCGGGCCTCGCCAGCCGCTTCGGCACCACAAT
CCACTTCCCCGACTTCAAAGGTGAAGATGCCGCAGAGGCCCTGCGGCGCC
TGCTGCGATCTGACAGAATGGGGTGCCTCGAGCTGTCGCCGAGCGCTGCT
GCGGCGCTGCCGCGCATGGCCGAGGACCTCGCTGCGACGCACGGCTTTGC
CAACGGGCGCAGCGTAAACGAGTGGGCGAATGGCGTTTTCGCGGCCGTCG
CTGACCGC
back to top