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Homology
BLAST of jgi.p|Trimin1|337167 vs. uniprot
Match: A0A835YRM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM6_9STRA) HSP 1 Score: 416 bits (1068), Expect = 2.490e-145 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 2
Query: 167 MTQSVQLGVVFNLAVTLASLCISLVVPWARYNHLVQRIPPAEAIYEAKTVGLWRCYGASCALKMQPRPFFWGGLLAIIFLALAVVLAMYAVVAEANRGRDTVFHVAXXXXXXXXXXXXXXXXMTSPRYPQRLHLYSLIALVLAPTIYALSTFHYMHGGYYMAGEYMALGAAGISAVLLALQYFLGPELNRIYVLQFHFAQPGYLSIGGSGSKRSPHRPAGETTALRV 847
MTQSVQLGVVFNLAVTLASLCISLVVPWARYNHLVQRIPPAEAIYEAKTVGLWRCYGASCALKMQPRPFFWGGLLAIIFLALAVVLAMYAVVAEANRGRDTVFHVAXXXXXXXXXXXXXXXXMTSPRYPQRLHLYSLIALVLAPTIYALSTFHYMHGGYYMAGEYMALGAAGISAVLLALQYFLGPELNRIYVLQFHFAQPGYLSIGGSGSKRSPHRPAGETTALRV
Sbjct: 1 MTQSVQLGVVFNLAVTLASLCISLVVPWARYNHLVQRIPPAEAIYEAKTVGLWRCYGASCALKMQPRPFFWGGLLAIIFLALAVVLAMYAVVAEANRGRDTVFHVAXXXXXXXXXXXXXXXXMTSPRYPQRLHLYSLIALVLAPTIYALSTFHYMHGGYYMAGEYMALGAAGISAVLLALQYFLGPELNRIYVLQFHFAQPGYLSIGGSGSKRSPHRPAGETTALRV 227
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|337167|MIX45930_6_42 |
Hectar predicted targeting category | signal anchor |
TranscriptId | 337489 |
Track | FilteredModels1 |
ProteinId | 337167 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14782 ID=mRNA_14782|Name=jgi.p|Trimin1|337167|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=850bp|location=Sequence derived from alignment at Contig_87:559974..567385- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CCCACTCCAACGTACACACACACAGCGCGTGTGCCTTTAGACCTACGCTA GAGCCGCCTAGACGACCTCTGGCCCGTCAGCCGCACGCCCTGCAACCTCC ATAGATCGTGGCGTGTCACGCACTCACCAAAAGGGGAGACGCTGATACAT CTGGTGTGACGAAAACATGACCCAGTCTGTGCAGCTCGGCGTGGTGTTCA ACCTGGCCGTCACTCTGGCAAGCTTATGCATCAGCCTGGTGGTGCCGTGG GCGCGCTACAACCACCTGGTCCAGCGCATCCCGCCTGCGGAGGCCATCTA TGAGGCCAAGACGGTCGGGCTGTGGCGTTGCTATGGTGCCAGCTGCGCGC TGAAAATGCAGCCGCGGCCGTTCTTCTGGGGCGGCCTGCTGGCCATCATC TTCCTGGCCCTCGCGGTTGTTCTGGCCATGTACGCTGTTGTCGCGGAGGC CAACAGGGGCAGAGACACTGTCTTCCATGTTGCTCTCGCCATGTACGCCG TCGTTGCGGAGGCCAACAGGGGCAGAGACACGATGACCAGCCCGCGGTAC CCGCAGCGCCTGCACCTCTACTCGCTGATCGCCCTGGTGCTGGCGCCCAC CATCTACGCCCTCTCCACCTTCCACTACATGCACGGCGGATACTACATGG CCGGCGAGTACATGGCCCTCGGCGCCGCGGGCATCTCTGCCGTGCTGCTG GCGCTGCAGTACTTCCTCGGCCCCGAGCTCAATCGAATCTATGTCCTGCA ATTCCATTTCGCGCAGCCTGGCTACCTGAGCATCGGCGGCAGCGGCTCAA AACGCTCCCCCCACCGCCCCGCTGGCGAGACCACCGCTCTGAGGGTCTAA back to topprotein sequence of jgi.p|Trimin1|337167 >Trimin1|337167|MIX45930_6_42 ID=Trimin1|337167|MIX45930_6_42|Name=jgi.p|Trimin1|337167|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=228bp
MTQSVQLGVVFNLAVTLASLCISLVVPWARYNHLVQRIPPAEAIYEAKTV GLWRCYGASCALKMQPRPFFWGGLLAIIFLALAVVLAMYAVVAEANRGRD TVFHVALAMYAVVAEANRGRDTMTSPRYPQRLHLYSLIALVLAPTIYALS TFHYMHGGYYMAGEYMALGAAGISAVLLALQYFLGPELNRIYVLQFHFAQ PGYLSIGGSGSKRSPHRPAGETTALRV* back to topmRNA from alignment at Contig_87:559974..567385- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_14782 ID=mRNA_14782|Name=jgi.p|Trimin1|337167|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7412bp|location=Sequence derived from alignment at Contig_87:559974..567385- (Tribonema minus UTEX_B_3156 ) CCCACTCCAACGTACACACACACAGCGCGTGTGCCTTTAGACCTACGCTA
GAGCCGCCTAGACGACCTCTGGCCCGTCAGCCGCACGCCCTGCAACCTCC
ATAGATCGTGGCGTGTCACGCACTCACCAAAAGGGGAGACGCTGATACAT
CTGGTGTGACGAAAACATGACCCAGTCTGTGCAGCTCGGCGTGGTGTTCA
ACCTGGCCGTCACTCTGGCAAGCTTATGCATCAGCCTGGTGAGCTTCCTG
CAAGTGTGCACTCATGTTCTCAGTCATGTTCTCTGTTGTGGAGCTTTCAG
ATCTTCACGGGGTTGCAGAGGGTTGCACACAGCCTGCGCGGCGAGTGCGG
AGACACAGGTGTTGGATCTATAGAAAGCTCTTTCTATTTTCCATCGTGAC
CGCTTTTCTTACTTAGCGGCATTGCTGCTGATGCCATTTCGCTAAATCCA
TGATGCACTTGCGGACGCCATCTCAATGAGGCTGATACACTTTTAGACAG
GCATGCACGGTTAGTAGCAGGCATTCATGGACGCCGTCTGATGCTAGCTG
TTGTGACAAAGTATGCAATACCCATGGGCATTCTGGAGCAGCTGAATTCG
AGTGTTTTGACCTCATTTCACTCAAATCCCCTGAATGAATGCCCTGAGAA
ACCAGCCTCTCTGCAACGCATGCACCAGCAATGGAATGCTCATTTAGAGC
CGCCATACAACCAAAGTCATCAGTCCACTGAGATATCCAGAGAGGTTTAG
CAGGGCAGAATTGGCAGCACGTCTCAGCGCATCAGCCCTGTAGCACATAT
CAGAGCACAAAGCTACTTGCACAGCAAATGCTCGCAGACACGCGCTGGCA
GATGCGCACGTGACGTACTATGGCCAAGTAGAAAGCAAGTCAGAGCGTTT
GCACTTTGATACATCACGGTGTTATTCATGCAACTGTTTCATATCGGGAT
GTGCGCACCGAAGGACCTGATCAGACACCAAAGGCGTACGTGACTGACTG
CTCCTGCCGCTCTGTTCAGACCAGCCGCTTGCATAGAGTATACTTCTAGA
AGTAGCTCATTACCATCTGGTGGAGCGTTTTTTTTTTAGAACCCTGGGTA
TGTCGGCAATGTTGCTGGTGCGAATGCGCCGAGGCATGCTTGCAAGCAAC
TTGATGGCGTCGCTTGTCTGGCAGCTGGAAAATGCTTTACTTCTTTGCGC
ACATTGAGTCGCATGTGTCCCGACTGAATGCAGTTTGCCTCCACACCAAG
CTCAGCTGCACGGCACTGCGCAAACTTCACGTAGTATCTGAGAATCCTGT
CAAGAACCTCTCGACGTAGTGTTTTAAACCGCTCAATCAAGCAACGTGAA
CACTGCTGTTTCAGCGCATGCACGTGCAAGCCTCGTGACCTGACATGACG
CATCTGCGCGGTGCCGCGGCCGCTCTAACACGTTGTGACCTGACCTGTCG
CATCCGTGCGGTGCTGCATCACCGTCATTGTCACGTTTGTCTGCTACATC
GCTCATCAGGCGGTGCCGTGGGCGCGCTGCAACCACCTGGTCATCTTTCA
TATAGTCTCTGAAAAGTCCTCCGATTAGCCCCTTTGGTGCAGCTTTGGAT
CAGTTGAATCATGCACAAGGAGCACTGCTGTTTCAGTGCATGCGCGTGCA
CACACCGTGACCTGACCTGACACATCCGTGCATTGCCGCATTATTGTTGC
CTGCTGCATCGCTCATCAGGTTGTGCCGTGGGCGTGCTACAACCTATCTG
AAACAGTCGAATCATGCGTGGAGAGCACTGCCATTTCAGTTCATCCACAT
GCACGCGTTGTGACCTGACCTGACGCATCTATGTGGTGCCGCATCATTGT
CGTCGTCACCTTCATTGCTCATCAGGTGGTGCCGTGGGCGCGCTACAACC
ACCTGGTCCAGCGCATCCCGCCTGCGGAGGCCATCTATGAGGCCAAGACG
GTCGGGTGAGTGACGCGGTGGCGGCGCGTGTCCTACTTCAACATTTCTTG
AAGTTGAGTGTGCTACTTCAACAGTGACGGTTTGCTGGCATGAGTCGCGC
TTCAGAGACGATGCAGCGCACAGTAGTTCAGGCCAAAACGGTCGGGCAAG
TGGCGCCGTGGTGTAAGTTCTGCAATTGAGCGTGCTAGTTCGACAGTGAC
AGGTTTGCAGCAACAGTTGCGCTACAGAGGCAATACAGTGTACAGGTACA
AATAGTGGCATTGCGGTAGCCTCATTCAAGGGCGACTGGGCGGGCAGACG
CGAAATGTACTGTGGCATTCACACAACAGCCATTAGTAGAAGTACTGCAC
TCAAGTATACTGAGGCGTGTGGCGCAGCAGCGAGTGACTCAAATTGTGGG
GGTCACTTACAGGGGGAGCAGTCACGTCGGTCTTGGCTGCCCGCACTTTT
TAAAATTGGCCGTTTTTAAGGGCTTTGTGGATGCAACTTCATCAGCAGCA
ATAGTCGCGGCTCCTCCGACATATTGTCTGCGAGTGGTTTGCACGATTTG
CGGCATAGCCGGATGATTGGTACAATTTTGATGGCAACATAACCAGCTGC
GTGATGCACGGTCGATGTCAACCTCAATTACACCGTCTTCGGACGATACT
CTTTCAGCAGACTCATACAGTACCCGCTTCATTGCATACCACAGCAGTCC
CATCTTTCATCTATGTGCCGTGGCATGGTCAGCGAGGTCGCGTTGTCAGC
AGATTTGTCGCAAAAGCGCAACGCTCTTCTGGTTCGTTCTATCAGTTCCT
CAAACACGTTTGAATAGATTTGGCTGGACTGAAATCTATTTTCACTGCAG
CGCAATTTGGGCCTCTGCCCAAGTTGCGCCGGAGACCCATGATTGTCATT
TGCCAGCAAAGAGCCTCAGTGCTTTCTATGTAGACTCGCAAAAGTATTTA
TTATTGTAGCGGAGGGTCCGCCGATCGCTATAGTCGATACGACAGTATTT
TCAATTTTGTTAGAGGTTTTACTCATTTACCATGTGTAACTGTTAGCACC
TGGTCATCACTTCCTACCAAAGCCGCCCTGCTCAAGCAATCAAACAGGAG
AGCTCAGCACCTCTCAGGGGTGTGAATATGCTGACGTAACGCATGAGCTG
GTGTCTCTATACTGCATGGTTCTGACAACCTCCAATTACTTTCATGTTAC
GTGCTCACGGCGGCTGTGTGTTGCTACAGGCTGTGGCGTTGCTATGGTGC
CAGCTGCGCGCTGAAAATGCAGGTACCTACCTACTATCGATAAAGAATTC
CGGTATGTATCATCTTACGTTGACGAGCTTCGGAGCTCCTGTTGGCGTAT
GTAAGGTCATGCAGCCACATGCACATGTGTGTGGCCATGTGCGGATGCCC
CCTCCTCAACTGTCATACTTCAAGTACTCAGGAATCATGACTGGTTTTTG
AGGAGTGTTATGACATGCGTGCATTGCATTTCATACACTGCAAGCGAACC
TGAAGGCTCCCTATGGCATGCTCAAGAATCATGAGTGGTGTTTGGTGCAG
TGATGTCTACCTTGCACCATTAAATCTTTAATGCACTGCAAGCTAACTTG
ACGGCACCCTATTGATTACGATAAGTAGTTGCAACCCTGGTCCAAACCTT
GAGTCTTCATGCGTCTTACAATAATACCGGCGCCCCCCGCATGTTTTTCC
TGCACTCATACTTTGCAGCTTGTATTGATTGAGAAAGGACAAATGTTGTT
GCCAGTGCCTGCTTTTGCATTATCTGGTCGTCTGCGCGTACCATACTTGC
ACCCCTATTCTCACAGTCGCAGCGGAGCCCCCCCTTGCGTCACCTTCTGC
TGTAGGTTAGGGGTTGGGGTTAGGGTTACCTAACCGTACACAACTGCCCA
AAACAAAACTTCGCATGGAAGTGCAACACTCTCCTTGACCGCCTTCCACC
ACGGCGCATGCACAATTATAGTGTGCCACAGTCCTCGGCATACTGCTGCT
GCTCACATGTGTCTACACATGTTCTGAACCCCCTGCTGCTGATGCTCACT
TCCCGCTCCTCTTGTGCTGCTCGAACAACTTCCACATGCACTGGAACTGT
GTGATGCTCAACTACTCGCTCCTCGCGTGTTCCGCGCTACAACCCTGCTG
TCGATGCTTAAATTTCCTCTCCGCTCGTGTTCCGCGCCACTTACAGCCAC
GGCGCGTCTTCTGGGGCGCTCTGAACAGCTTTCACATGCGTTGGAACCCC
TGCTGCTGATGCTCAAATCCTTGCTCCTCTCGTGCTGCTCCAACAGCATT
CACTGCTCGAACAGTTTTTACATGTGCTGTGGAAACCCTGCTGCTGATTC
TCAAATGCGTGCTCTTGTCGTGTTCTGCCCTGCTCACAGCCGCGGCCGTT
CTTCTGGGGCGGCCTGCTGGCCATCATCTTCCTGGCCCTCGCGGTTGTTC
TGGCCATGTACGCTGTTGTCGCGGAGGCCAACAGGGGCAGAGACACGTGA
GTGCGCGGCACCTTCGGTCTGCTGCTACAGTCTACGGTGAAACTGATTCT
TTGTATCTAGCAGGTCCAACTCCTGTTTCAGCTTCACAGTGTCTTCCATG
TTGCTCTCGCCATGTACGCCGTCGTTGCGGAGGCCAACAGGGGCAGAGAC
ACGTGAGTGCTGTGCGCTCAGCAGCTCTAACTCCTGTTGTAATCTATAAC
ACAACTTCAAGATTCAGCTTGCAACTCTACACTTCAACTTTACAGGGGCA
GGGACATGTGAGTGCGCGGCACATTGCGGTCTGCATCGCAGTCTACGGTG
AAACTGTATCTCTGTATTTGCGGTTCTCGTGAGGCATGGCGCCTTGTGTG
TATGTCACGGTCTACGGTAAAACTGTATCTCTGTCTGTGCAAGTCGCATG
AGGCATGGCCAAAGGCCAACACGGGCAGGGACACGTGAGTGCACGGCGCC
TTCGGTTTACTATCACAGTCTACGGTGAAACTGTATATCGTTGGTATGTC
TGTCATAGGCCATTGCTGCCATCAGACACATGAGTGCTCCGCGCTCAGCA
GGTTCAACTCCTACTTTAAATGTCTGATGTAGTAATTTCTATGTTCGTAT
TGAGGCTGCTAATTGCCACACCTGCCCCTCTGGCTACCAGTTTTCAGGGC
AGAGACACGTGTGTACTAGGTGCACAAAGTCAAAGGGCTTGCTAAAAGGT
TGCGCTGAGGTTGTGAAGCTGCGTGCATTGCGCGCCGCAGATACCAATAT
CATAGAAGTATGTGTTACGTATCAACACAAACTCACTGCAATGGGCCATC
TACCCAGCACTGGCACTGGCCGGCCACCAAAAATAGCAAGCTAGCACGTT
GAGTGATTGACTGAGACGCCACATGTGTCGGCACACTCTACTGGCTGTGT
TGTCAGCTGCGTTCTTGAAAATACTTTGCAGGATTACTCAGCAAAACCTG
TGAATGACTGCTCAGCACATCAGCAATGTATGAACACACTAGCCCAGGCC
TCTTCGCTCGTGAAGCCAAGGCTACTCGGTTGACCAGCCCGCAAATCCCC
TGTTGTCAGGCACAGACACACATGCATTGACCATGATGTTCCTCCCAGTA
ACCTAAGGCCACAGTGACTCCTTGTTTTTTCACTTACAATCACAAATGTA
CGCTGGCTTTGAACCTGAACCCCCTGCAGGATGGCCAGCCCGCGGTACCC
GCAGTGCCCGACTCTTTGCATGTGAAGATTAAAACCATGAAATTACCCTG
GGTTTCAATTTAAATTTGAACCCCCTGTAGGATGACCAGCCCGCGGTACC
TGACTCTTTGCTTCTTCACTTGAAATTATGAATTTGTCCTGGATTTGAAC
CCGTGCAGGAGACCAGCCCGCGGTACCCGCAGCGCCTCCACCTGTACTCG
CTGATCGCACTGTTGTCAGGCATGGACACACACGCATTGACCGTGGTCTT
TCCACCCGCTAACCCAAAGCAACAGTGACCCCTTGCTTTCAAATATTACA
ATACTAAACCTACCCTGGATTGAACCCGCGAACTCCCTGCAGAATGGCCA
GCCCGCGGTACCCGCAGCACCTGACTCTTTGCTTTAATTAAATCATGTAT
TTCCCCTGGATTTGCACCCGTGCAGGATGACCAGCCCGCGGTACCCGCAG
CGCCTGCACCTCTACTCGCTGATCGCCCTGGTGCTGGCGCCCACCATCTA
CGCCCTCTCCACCTTCCACTACATGCACGGCGGGTAAGCTCCCCATGCAC
GCCCATTTCACACGTCAATGCACTGTCCCAGCAGAGGTCACATTTCATCT
GCGGTGCTTTGCGCTGGGCTCTCAATACCAGAACATTGTAGCCATGCGCT
GCGCATTCGGAATGCAAGCGCGTTACACGTGTGATGTCATCCTGTTCCTG
CTGTTCACTGTTGCCAGTACTGTAACCTCAACTTCAATCGCTCGCTTGTA
AACTGCTCTGCAGCAATCTGGCTTTTGTGAGCCTGGTTTTGTGGCAGCCT
AGGCGGCTTTCAGCAAACGTACAGCAATGTCAGCAGATGCATGCACTTGC
AACACTTTACGCGCCAGCCAGCGTCAGCTGATTTGCGGCTAAACTTCAAC
TCTGCGCGCTCGCAGATACTACATGGCCGGCGAGTACATGGCCCTCGGCG
CCGCGGGCATCTCTGCCGTGCTGCTGGCGCTGCAGTACTTCCTCGGCCCC
GAGGTAAGCAGTTGAAGTAGACTTGCAATGTGGGGTATTCATGTATGTAA
GCTGTGAAGGCGCTGATGTCGGGGCCCGCTCGCACACAGCGCTGAGTTGT
TAGATTTTGCATGGGGTATGCATGTATGTAGGCTGTGCAGGCGCAGATGT
GGCCGGCCGGCGCCACACGAGGATGCATTTGACCGTCTGCGAGAAATGGT
CTCTGCTCAAGTGGCCATTTGCAATCAGATTTTCTCTCTTGCTTGTTGGC
TTTGCGAACATTTCAGTGGAGCTAGACTGCGACTGTGATCCTGCAATTTT
GCCGCAAGTAGTGCTTATGGTGGATGCTTCCGTGCACATGACCAGCCCCG
CACACTGACGCACTCGACATGCCAAAGCTGTTATTGTCTTGCTGTTCCCG
TGTTTAGGGTGATCACAGTAAGCAATATTTTCTACCTTTATACATCGTCA
CAAATCTGTAGGGCGAAGATCAGCGGTACATAGCCCGCTCACCTCTCGCA
CTCATGATCGTGCATTACATACATCACCGGAGTTCTCAGTTGTGTGTTCT
TTCAAGCTCAATTAAGGGCGCCTGACCTGCAATCCCATGTCGTGCAGCCT
GCGTCCGTCACTAAATGTGTCTATTGCGTTTCTTTCAAGCTCAATCGAAT
CTATGTCCTGCAATTCCATTTCGCGCAGCCTGGCTACCTGAGCATCGGCG
GCAGCGGCTCAAAACGCTCCCCCCACCGCCCCGCTGGCGAGACCACCGCT
CTGAGGGTCTAA back to topCoding sequence (CDS) from alignment at Contig_87:559974..567385- >mRNA_14782 ID=mRNA_14782|Name=jgi.p|Trimin1|337167|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=684bp|location=Sequence derived from alignment at Contig_87:559974..567385- (Tribonema minus UTEX_B_3156 ) ATGACCCAGTCTGTGCAGCTCGGCGTGGTGTTCAACCTGGCCGTCACTCT GGCAAGCTTATGCATCAGCCTGGTGGTGCCGTGGGCGCGCTACAACCACC TGGTCCAGCGCATCCCGCCTGCGGAGGCCATCTATGAGGCCAAGACGGTC GGGCTGTGGCGTTGCTATGGTGCCAGCTGCGCGCTGAAAATGCAGCCGCG GCCGTTCTTCTGGGGCGGCCTGCTGGCCATCATCTTCCTGGCCCTCGCGG TTGTTCTGGCCATGTACGCTGTTGTCGCGGAGGCCAACAGGGGCAGAGAC ACTGTCTTCCATGTTGCTCTCGCCATGTACGCCGTCGTTGCGGAGGCCAA CAGGGGCAGAGACACGATGACCAGCCCGCGGTACCCGCAGCGCCTGCACC TCTACTCGCTGATCGCCCTGGTGCTGGCGCCCACCATCTACGCCCTCTCC ACCTTCCACTACATGCACGGCGGATACTACATGGCCGGCGAGTACATGGC CCTCGGCGCCGCGGGCATCTCTGCCGTGCTGCTGGCGCTGCAGTACTTCC TCGGCCCCGAGCTCAATCGAATCTATGTCCTGCAATTCCATTTCGCGCAG CCTGGCTACCTGAGCATCGGCGGCAGCGGCTCAAAACGCTCCCCCCACCG CCCCGCTGGCGAGACCACCGCTCTGAGGGTCTAA back to top
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