mRNA_14783 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171930
Unique NamemRNA_14783
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.070e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 MVVLCHVPQDIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFRQAAQMPALAAAHV 264
            MVVLCHVPQDIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFRQAAQMPALAAAHV
Sbjct:    1 MVVLCHVPQDIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFRQAAQMPALAAAHV 88
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.700e-24
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            +IPE LQ+KA  RV   + +  + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   26 EIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 91
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.720e-22
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MVVLCHVPQDIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            +++    P+   E LQ+ AI +V E L +  ++KD+A+++K+HFD++ GGTWHCVVGR+FGCSVT+ET+YLLFF+
Sbjct:   18 VILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFK 92
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.290e-21
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            DIPE + +KAI +  E + +  + KDIA+ +K  FD++ GGTWHCV GRSFGCSVTHETKYL+FF+
Sbjct:   20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQ 85
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A0P1B084_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B084_PLAHL)

HSP 1 Score: 88.2 bits (217), Expect = 9.370e-21
Identity = 36/68 (52.94%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRV--AVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            +I  A++ +A+  ++++LQ+   A+ KDIA+DMKKHFDQ+ G TWHC+VG+ FGCS+ ++T+YLLFFR
Sbjct:   32 EIDTAMKDEAVTHLIQILQKTPDAIEKDIATDMKKHFDQKYGQTWHCIVGKGFGCSIAYDTQYLLFFR 99
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: H3G7W0_PHYRM (Dynein light chain n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7W0_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 6.190e-19
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRV--AVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFRQAAQ 237
            ++   ++ +AI  ++++LQ    A+ KDIA+DMKK+FDQ+ G TWHC+VG+ FGCS+ ++T+YLLFFR   Q
Sbjct:    8 ELGTTMKDEAIAHLIQILQATPNAIEKDIATDMKKYFDQKYGQTWHCIVGKGFGCSIAYDTQYLLFFRADQQ 79
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: D0NUI2_PHYIT (Dynein light chain n=17 Tax=Phytophthora TaxID=4783 RepID=D0NUI2_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 9.770e-19
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRV--AVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            ++  A++ +A+  ++ +LQ    A+ KDIA+DMKK+FDQ+ G TWHCVVG+ FGCS+ ++T+YLLFFR
Sbjct:   36 ELGTAMKDEAVAHLIRILQATPNAIEKDIATDMKKYFDQKYGQTWHCVVGKGFGCSIAYDTQYLLFFR 103
[Close]
BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.440e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            ++PE L+ KA E   + L    V KD+A  +KK FD+   GTWHCVVGR+FGCS+THETKYL+FF+
Sbjct:   19 EMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFK 84
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BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A485LP07_9STRA (Dynein light chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP07_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.840e-18
Identity = 34/66 (51.52%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            ++  A++ +AI  + + L   A+ KDIA+DMKK+FDQ+ G TWHC+VG++FGCSV ++T++LLFFR
Sbjct:   37 EMTTAMKDEAINHLGDTLAANAIEKDIATDMKKYFDQKYGPTWHCIVGKAFGCSVAYDTQFLLFFR 102
[Close]
BLAST of jgi.p|Trimin1|171930 vs. uniprot
Match: A0A662X7T6_9STRA (Dynein light chain n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7T6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.890e-18
Identity = 33/68 (48.53%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   28 DIPEALQKKAIERVVEVLQRVA--VAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 225
            ++  A++ +A+  ++++LQ  A  + KDIA+DMKK+FDQ+ G TWHC+VG+ FGCS+ ++T++LLFFR
Sbjct:   38 ELSTAMKDEAVAHLIQILQTNANAIEKDIATDMKKYFDQKYGQTWHCIVGKGFGCSIAYDTQFLLFFR 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171930 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLR1_9STRA3.070e-58100.00Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
D7FQ38_ECTSI1.700e-2463.64Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2UW34_9STRA4.720e-2252.00Dynein light chain n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S2RLM3_9STRA3.290e-2159.09Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A0P1B084_PLAHL9.370e-2152.94Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
H3G7W0_PHYRM6.190e-1948.61Dynein light chain n=1 Tax=Phytophthora ramorum Ta... [more]
D0NUI2_PHYIT9.770e-1951.47Dynein light chain n=17 Tax=Phytophthora TaxID=478... [more]
A0A7S1U8R4_9STRA2.440e-1856.06Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A485LP07_9STRA3.840e-1851.52Dynein light chain n=1 Tax=Aphanomyces stellatus T... [more]
A0A662X7T6_9STRA5.890e-1848.53Dynein light chain n=2 Tax=Nothophytophthora sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_87contigContig_87:577576..578406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171930|e_gw1.87.37.1
BRITEko00000,ko00001,ko04812
KEGG Pathwayko04962,map04962
KEGG koko:K10418
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Evalue2.78e-25
Seed ortholog2880.D7FQ38
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
TranscriptId172252
TrackFilteredModels1
ProteinId171930
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171930gene_14783Tribonema minus UTEX_B_3156 geneContig_87 577576..578406 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14783_1exon_14783_1Tribonema minus UTEX_B_3156 exonContig_87 577576..577701 +
exon_14783_2exon_14783_2Tribonema minus UTEX_B_3156 exonContig_87 578266..578406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14783CDS_14783Tribonema minus UTEX_B_3156 CDSContig_87 577576..577701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171930Trimin1|171930|e_gw1.87.37.1Tribonema minus UTEX_B_3156 polypeptideContig_87 577576..578406 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14783 ID=mRNA_14783|Name=jgi.p|Trimin1|171930|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=267bp|location=Sequence derived from alignment at Contig_87:577576..578406+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGTCTTGTGTCATGTGCCGCAGGACATCCCCGAGGCGCTGCAAAA
AAAGGCGATAGAGCGCGTGGTGGAGGTTTTACAGCGGGTCGCTGTGGCGA
AAGACATTGCGTCTGACATGAAGAAGCACTTTGACCAGGAATGCGGAGGG
ACGTGGCACTGCGTCGTGGGGCGGAGTTTTGGCTGCTCTGTGACGCACGA
GACCAAGTACCTTCTCTTCTTCAGGCAAGCCGCTCAAATGCCTGCGCTGG
CAGCCGCACATGTGTAG
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protein sequence of jgi.p|Trimin1|171930

>Trimin1|171930|e_gw1.87.37.1 ID=Trimin1|171930|e_gw1.87.37.1|Name=jgi.p|Trimin1|171930|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=89bp
MVVLCHVPQDIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGG
TWHCVVGRSFGCSVTHETKYLLFFRQAAQMPALAAAHV*
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mRNA from alignment at Contig_87:577576..578406+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14783 ID=mRNA_14783|Name=jgi.p|Trimin1|171930|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_87:577576..578406+ (Tribonema minus UTEX_B_3156 )
ATGGTAGTCTTGTGTCATGTGCCGCAGGACATCCCCGAGGCGCTGCAAAA
AAAGGCGATAGAGCGCGTGGTGGAGGTTTTACAGCGGGTCGCTGTGGCGA
AAGACATTGCGTCTGACATGAAGAAGGTGAGTTCTCACTTGGCGGTCGTT
GCACGAGCGACGGAATCAAACAAATGCTTTTTCAAGCTTACCGGTTCAGC
TCAGGCATGCTCTGATTTTGCCAATGGTTTTGCAAACCGCACGCCACCGT
TGGAGAGGTTGCGCAGTTGCGTTTATGGTGCGCCGACGCTGCAGTGTGTG
CGCCTCACTGCTGACGCACAGTCACGTCGTTGCTGCGTCATTGTAACCTT
GCAGTCCGAGCGCTTGGTCTGGCAGTCTGCATGTGTGACTTGCACATTCA
GGTGGTAGCCCCAATACTCAACGCTCACCGCTTGATGAGCATTGCTGCTC
GTTTTCACACCGGATTTCTGGCGCAGCGACCTTGCAGGCCGCAACAGCAG
CTTCATGCACACCAGTGCGACTACAACTTGTTGAGCATTGTCTAACGTGC
TGAGGCAAATGCCTGCCCTGCGACTGACTCTGTCCGTGTCTGATGGGCGT
TCGGTACCATGAGTGTACCATCTTGTACACTGTCAGATGTCTTCATGTTT
TCTGATGTTCGCGACCTGGAACCGCGGTCACTGCCTGCAGCACTTTGACC
AGGAATGCGGAGGGACGTGGCACTGCGTCGTGGGGCGGAGTTTTGGCTGC
TCTGTGACGCACGAGACCAAGTACCTTCTCTTCTTCAGGCAAGCCGCTCA
AATGCCTGCGCTGGCAGCCGCACATGTGTAG
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Coding sequence (CDS) from alignment at Contig_87:577576..578406+

>mRNA_14783 ID=mRNA_14783|Name=jgi.p|Trimin1|171930|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=267bp|location=Sequence derived from alignment at Contig_87:577576..578406+ (Tribonema minus UTEX_B_3156 )
ATGGTAGTCTTGTGTCATGTGCCGCAGGACATCCCCGAGGCGCTGCAAAA
AAAGGCGATAGAGCGCGTGGTGGAGGTTTTACAGCGGGTCGCTGTGGCGA
AAGACATTGCGTCTGACATGAAGAAGCACTTTGACCAGGAATGCGGAGGG
ACGTGGCACTGCGTCGTGGGGCGGAGTTTTGGCTGCTCTGTGACGCACGA
GACCAAGTACCTTCTCTTCTTCAGGCAAGCCGCTCAAATGCCTGCGCTGG
CAGCCGCACATGTGTAG
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