mRNA_13710 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351304
Unique NamemRNA_13710
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A835YIH0_9STRA (Ribosomal protein L25/Gln-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIH0_9STRA)

HSP 1 Score: 583 bits (1503), Expect = 3.750e-209
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 3 
Query:  120 MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA 1007
            MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA
Sbjct:    1 MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA 296
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A1V9ZYZ7_9STRA (50S ribosomal protein L25 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYZ7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.710e-20
Identity = 56/187 (29.95%), Postives = 103/187 (55.08%), Query Frame = 3 
Query:  417 RPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKK--LPK 971
            R +R+GL+PG++YG+G DG +SK+++ + +   ++E R+++ S  N  Y V++  A P    L     + ++ + D   TVN+LR++ GR + +P+  +NEE S  ++RG ++  V   +   I   D  +IP  +DVD+ G+  G +I  + +  P  V     E+       + T+ GK+  +PK
Sbjct:   45 RLRRSGLLPGILYGEGSDGENSKVLVSMNQTDFEREYRKLRNSMGNQVYEVAIGDAKPTKVLL---RDITLHPVTDVPLTVNFLRFKPGRTVHIPLAFLNEETSPGLKRGGYINNVRHEIPCKI---DTETIPTTLDVDVNGMHVGQRIYLENITFPENVTPLVKERSV-----IATIAGKRGLIPK 220
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: M4C193_HYAAE (Ribosomal_TL5_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C193_HYAAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.500e-20
Identity = 51/169 (30.18%), Postives = 98/169 (57.99%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 914
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V V+   P  A   +   V+++ + D    VN+LRY+ GR +S+P+  +NEE S  ++RG ++  +   ++  +S+    +IP  + +D+ G+  GDK+  + +  P GV+   PE
Sbjct:   47 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRAFERMHRKLWTSIENQVFQVQVEEQSPVKA---YMRDVQLDPVTDVPLAVNFLRYKPGRVVSIPITYLNEEGSPGLKRGGFINHIYHALECTVST---DNIPTTLQIDVNGLHVGDKVFLEAITFPEGVEPNVPE 209
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A329SV67_9STRA (Ribosomal_TL5_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329SV67_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.970e-20
Identity = 51/163 (31.29%), Postives = 95/163 (58.28%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 896
            A+ R ++ GL+PGV+YG+G DG D ++++  P R+ ++E R++  S +N  + V V    P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   +D  I + +   IP  + +D+ G+  GDK+  + +  P GV
Sbjct:   45 ASRRLRKQGLLPGVLYGEGEDGKDERVLVSFPTRAFEREHRKLWTSIENQVFHVQVGDQPPVKA---YMRDVQLDPVTDVPLAVNFLRFKPGRAVSIPITYLNEEGSPGLKRGGFINHIHHSLDCTIFTDE---IPTTLQIDVNGLHVGDKVYLESIKFPEGV 201
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A0P1ANU4_PLAHL (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANU4_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 2.220e-19
Identity = 52/163 (31.90%), Postives = 97/163 (59.51%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 896
            A+ R ++ GL+PGV+YG+G+DGT+ ++++ +P R+ +   R +  S +N  + + VD   P  A   +   V+++ + D    VN+LR++ GR +S+P++++NEE S  ++RG ++  +   +D  I + D   IP  + +D+ G+  GDKI    +  P GV
Sbjct:  782 ASRRLRKQGLLPGVLYGEGVDGTNERVLVSLPTRTFEILHRDLWTSIENQVFQIQVDNEPPVKA---YMRDVQLDPVTDVPLAVNFLRFKPGRTVSIPIKVMNEEGSPGLKRGGFINHIYHSLDCTIFTED---IPATLKIDVNGLHVGDKIFLDSISFPDGV 938
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: G4YKY4_PHYSP (Ribosomal_TL5_C domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YKY4_PHYSP)

HSP 1 Score: 95.5 bits (236), Expect = 4.380e-19
Identity = 50/163 (30.67%), Postives = 93/163 (57.06%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 896
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   ++  I + D   IP  + +D+ G+  GDK+    +  P GV
Sbjct:   48 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKLWTSIENQVFQVQVDDQPPVKA---YMRDVQLDPVTDVPVAVNFLRFKPGRKVSIPITYLNEEGSPGLKRGGFINHIHHSLECSIFTDD---IPTTLQIDVNGLHVGDKVYLDAIKFPEGV 204
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A3M6VAT3_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAT3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.360e-19
Identity = 54/169 (31.95%), Postives = 96/169 (56.80%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 914
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LRY+ GR +S+P+  +NEE S  ++RG ++  +   +D  I + D   IP  + +D+ G+  GDK+  + +  P GV    PE
Sbjct:  779 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKIWTSIENQVFQVQVDDQLPVKA---YMRDVQLDPVTDVPIAVNFLRYKPGRTVSIPITYLNEEGSPGLKRGGYINHIHHALDCTIFTDD---IPATLQIDVNGLHVGDKVYLESIKFPEGVTANIPE 941
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A484E526_BRELC (Ribosomal_TL5_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E526_BRELC)

HSP 1 Score: 92.8 bits (229), Expect = 3.910e-18
Identity = 51/163 (31.29%), Postives = 94/163 (57.67%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 896
            A+ R ++ GL+PGV+YG+G DG D ++++ +P RS ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LR++ G  +S+P+  +NEE S  ++RG ++  +   +D  I + D   IP  + VD+ G+  GD++  + +    GV
Sbjct:   46 ASRRLRKHGLLPGVLYGEGEDGNDERVLVSLPTRSFERMHRKLWTSIENQVFQVQVDDKPPVKA---YMRDVQLDPVTDVPVAVNFLRFKPGCRVSIPITYLNEEGSPGLKRGGFINHIYHSLDCTIFTDD---IPTTLQVDVNGLHVGDRLCLEAINFSDGV 202
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A3F2RN58_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN58_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.270e-18
Identity = 52/169 (30.77%), Postives = 94/169 (55.62%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 914
            A+ R ++ G +PGV+YG+G DG D ++++    R+ +   R++  S +N  + V V    P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   ++  I + D   IPK + VD+ G+  GDK+  + +  P GV    PE
Sbjct:   44 ASRRLRKQGFLPGVLYGEGEDGGDERVLISFRTRTFEGLHRKLWTSIENQVFQVQVGDQKPVKA---YMRDVQLDPVTDIPVAVNFLRFKPGRTVSIPITYLNEEGSPGLKRGGYINHIHHALECTIFTDD---IPKTLQVDVNGLHVGDKVHLEAINFPEGVVPSIPE 206
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BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A225WBQ2_9STRA (Ribosomal protein L25, Ctc-form n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBQ2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-17
Identity = 48/163 (29.45%), Postives = 92/163 (56.44%), Query Frame = 3 
Query:  408 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 896
            A+ R ++ G +PGV+YG+G +G D ++++  P R+ +   R++  S +N  + V V    P     V+   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   +D    + +   IPK + +D+ G+  GDK+  + +  P GV
Sbjct:   44 ASRRLRKQGFLPGVLYGEGENGKDERVLVSFPTRTFEHVHRKLWTSIENQVFQVQVGEQAPVK---VYMRDVQLDPVTDAPMAVNFLRFKPGRAVSIPITYLNEESSPGLKRGGFINHIYHSLDCTSFTDE---IPKTLQIDVNGLHVGDKVYLEAIKFPEGV 200
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIH0_9STRA3.750e-209100.00Ribosomal protein L25/Gln-tRNA synthetase n=1 Tax=... [more]
A0A1V9ZYZ7_9STRA2.710e-2029.9550S ribosomal protein L25 n=1 Tax=Thraustotheca cl... [more]
M4C193_HYAAE4.500e-2030.18Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A329SV67_9STRA5.970e-2031.29Ribosomal_TL5_C domain-containing protein n=11 Tax... [more]
A0A0P1ANU4_PLAHL2.220e-1931.90Cleavage and polyadenylation specificity factor su... [more]
G4YKY4_PHYSP4.380e-1930.67Ribosomal_TL5_C domain-containing protein n=3 Tax=... [more]
A0A3M6VAT3_9STRA5.360e-1931.95Cleavage and polyadenylation specificity factor su... [more]
A0A484E526_BRELC3.910e-1831.29Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A3F2RN58_9STRA7.270e-1830.77Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
A0A225WBQ2_9STRA1.000e-1729.45Ribosomal protein L25, Ctc-form n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:539893..548578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351304|estExt_Genemark1.C_Ctg_860056
DescriptionRibosomal L25p family
COG categoryJ
Max annot lvl4776|Peronosporales
EggNOG OGsCOG1825@1|root,2QPTI@2759|Eukaryota,3QDE6@4776|Peronosporales
Evalue4.44e-23
Seed ortholog4792.ETI34755
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description50S ribosomal protein L25
Ec32 orthologEc-07_005340.1
TranscriptId351626
TrackFilteredModels1
ProteinId351304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351304gene_13710Tribonema minus UTEX_B_3156 geneContig_86 539893..548578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351304Trimin1|351304|estExt_Genemark1.C_Ctg_860056Tribonema minus UTEX_B_3156 polypeptideContig_86 539971..548459 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13710_9exon_13710_9Tribonema minus UTEX_B_3156 exonContig_86 539893..540026 -
exon_13710_8exon_13710_8Tribonema minus UTEX_B_3156 exonContig_86 541434..541560 -
exon_13710_7exon_13710_7Tribonema minus UTEX_B_3156 exonContig_86 542659..542700 -
exon_13710_6exon_13710_6Tribonema minus UTEX_B_3156 exonContig_86 543278..543351 -
exon_13710_5exon_13710_5Tribonema minus UTEX_B_3156 exonContig_86 544203..544267 -
exon_13710_4exon_13710_4Tribonema minus UTEX_B_3156 exonContig_86 545305..545406 -
exon_13710_3exon_13710_3Tribonema minus UTEX_B_3156 exonContig_86 546192..546306 -
exon_13710_2exon_13710_2Tribonema minus UTEX_B_3156 exonContig_86 547364..547453 -
exon_13710_1exon_13710_1Tribonema minus UTEX_B_3156 exonContig_86 548240..548578 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13710UTR3_13710Tribonema minus UTEX_B_3156 three_prime_UTRContig_86 539893..539970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13710CDS_13710Tribonema minus UTEX_B_3156 CDSContig_86 548240..548459 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13710UTR5_13710Tribonema minus UTEX_B_3156 five_prime_UTRContig_86 548460..548578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13710 ID=mRNA_13710|Name=jgi.p|Trimin1|351304|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1088bp|location=Sequence derived from alignment at Contig_86:539893..548578- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGGTGCGGTGCTTTGCAGCAACAGCAGCTAAGAAATCCAATTGCACGC
TAGTCTCATGCGGTTCCGATAACCTCTGAGCCCCCTGGCGTCGATAAGAG
GAGATTATCTGCTCGCAACATGTTTGTACATCGGGTGTGCTGCGGGAGCC
TGCGGCGGCGAACAGCGGCGTTGGCTCTGCAGCAGAATGTCCCGCCATCA
GCAGGTGCAGCAGCGCAAGTAAGGTGCATGAGCTCGCACTTTCCGGACGA
GTCGCGCATTGGAGAGCACAGCAGGGTGTTGCACGCCGTCACCAGGGACC
CATTGGGAGGATCAAAGCGATCTGCGGAGCTCAGAGAAGCAACATCCCAC
GCGCTGGAGAGCCAGCGCCAGAATAAGCTCGCGGCTTCCAGGGTGTTCCC
GCTGGGAGCGGCAACTCGACCCCAGCGCGCCGGCTTGATCCCTGGGGTAA
TATACGGGAAGGGGCTGGACGGCACTGACTCCAAGATCATGATGTGCGTG
CCGGAGCGCTCTTTGCAGAAGGAGATGCGGCAAATGCAAGAAAGTTTCCA
GAACGTTCCCTACCTGGTGTCGGTCGACGGCGCCGACCCCGCAGACGCAG
AGCTGGTCTTCCCTGCCTACGTCGAGATCAATAAGCTCAACGACAGGTTT
CAGACGGTGAACTGGCTACGCTACCGCGTGGGGCGGCCACTCAGCGTGCC
AATGCGCCTAGTCAACGAGGAGCTGTCGCTATCAATGCGGCGTGGCGCGT
GGGTTCAGAAGGTCGAGCGGCGCGTCGACATCCTGATTTCATCCATGGAC
CCAGCATCCATACCAAAATACATCGACGTGGATCTGACGGGCGTCAAGGC
CGGCGACAAGATTGACGCCAAATACCTCGTGCTGCCGCCGGGCGTGCAAC
TTTTCAGGCCCGAACAGCCGTTCAAGATCGGCTGGAGCATGGGGACAGTC
AGAGGCAAGAAGCTGCCCAAGGACGCAGAGTCGGACAGCGACGACGAAGA
CGCGGCATGAAGCCTCTGCCGAGCACTGATGCTAAATGCATCGCAGCATG
CACTATGCCGCGCGTGCTCAAATATACACATCGTGCAC
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protein sequence of jgi.p|Trimin1|351304

>Trimin1|351304|estExt_Genemark1.C_Ctg_860056 ID=Trimin1|351304|estExt_Genemark1.C_Ctg_860056|Name=jgi.p|Trimin1|351304|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp
MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEH
SRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATR
PQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLV
SVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNE
ELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDA
KYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA*
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mRNA from alignment at Contig_86:539893..548578-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13710 ID=mRNA_13710|Name=jgi.p|Trimin1|351304|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8686bp|location=Sequence derived from alignment at Contig_86:539893..548578- (Tribonema minus UTEX_B_3156 )
TGCGGTGCGGTGCTTTGCAGCAACAGCAGCTAAGAAATCCAATTGCACGC
TAGTCTCATGCGGTTCCGATAACCTCTGAGCCCCCTGGCGTCGATAAGAG
GAGATTATCTGCTCGCAACATGTTTGTACATCGGGTGTGCTGCGGGAGCC
TGCGGCGGCGAACAGCGGCGTTGGCTCTGCAGCAGAATGTCCCGCCATCA
GCAGGTGCAGCAGCGCAAGTAAGGTGCATGAGCTCGCACTTTCCGGACGA
GTCGCGCATTGGAGAGCACAGCAGGGTGTTGCACGCCGTCACCAGGGACC
CATTGGGAGGATCAAAGCGATCTGCGGAGCTCAGAGAAGGTAAGCGAGTC
CTCAAGCAATGTGTCAATTTGCAGAGTGAAGTGTACTCCTTTTGCATACA
AAGGCGGTTGTGGACATGCACTCAAAATGCTGTGGTTTCATGTTTCAACA
TTGCTGTCATGGATCATGAAGCTGCTGCATACCCTGCTAGAGGAGCTATG
CGCTCAAACCATCACCTTTTATGTGTCAACCATAACAGAAAAAGGTATGT
ACGAGTATGTCTGCATCTGCCAACGGCTGTGCTGACTGCGGCCGGTGGTT
TGTGCACCTCACACGCTGCTCAGAACTCTGAGCGTACTGGCTGCATACTG
TCAATGCTCTGCATTTACCCATCACACAAGGAAGGCCCTCCCTTAATCCC
CCAGAGGTAGGGGGCGAGGGACCCATTTTATAGTGTAGAGGAGGCTAGCA
AGGGGTAAGCTGCGCTCAAAGCGGGTCAGACACCATCGCTCCCACCTCAG
CAAAGGGTTTTGAACGTGCGTCAAATGCTGGTTTTTTTTTTGCGTTGGAC
ATGTGAGCATTAAACTACGTACACCTTGCGAGCACGGGTTCTGCCTTGCT
GTGAGACCGTGTTATCTCTACGTCAAGCACTTTCAACAGCGCCTTCTGCA
AAAAGTGTACTTCCCGCAACTTCAAAGCCGTTACGCACAACTTCACTTCC
TGAGGAGCGAAAAGTGGAGACCATGAGCGCCCTGCAGGACGTGAAGCGTG
GCCGCAGGCTTGTGCCTGCAGTACGATACGTGCCAAGCGTCAATACGCTG
CACGCGCTCAGCGCCGCCTGTGCAGCAACATCCCACGCGCTGGAGAGCCA
GCGCCAGAATAAGCTCGCGGCTTCCAGGGTGTTCCCGCTGGGAGCGGCAA
CTCGACCCCAGCGCGGTGATTGGTGAACGGTTGTAGCGGTACGCAAATGT
GTACGTACCCACCGCTAAAATTAGCAAGCCCAGATGCATTGGTAGTGTGG
AGAATCGCGCGCGCGCCGAAATACCTAAGAAGGCTCGCGCCCTGAAGGGT
CCCTCGCCTACAAAAGATTATCAGATCTAGTGCAGGTATGAATGTTTCAG
GCAAGGGTTGGAGGTGGCGGCGTTGCGACTCGTTACTACACTGCAAGAGC
ACTGTGCCGCAATGTGTCGATTATCATGTGCTCATGGGTTTTCAACGCTT
TCAAACATGCTAACAGGGCTTAAAAGGCGTCGCCCATTGTCCGCGCTCGG
CATGGCATCAGCACACATCGCCGGTGCTATGCCCACAAAACTCGTCGCCA
TTGCCGCCTCCTTGCACTGGATCGTGCATGCTCACCGTGCTCCATCCGCA
GCGGCCAGATGGCGGCCGTAGCATCATCAATCACGTTCATGGTGGGGGAC
CAGATTGCAACGCAGCGCCCGCGGTTTCCGCATTAGCTCGCAGAAGGCGT
GTGTGCTTAGCAGCATCTGGGTCGTGCCACAAATCAATTACGGACCTTTC
CTAATGTACATGCGCAGAGGGTGACTGAGCTCGCAAAGTGTGTGTGCTTC
GCAGCATTTGGGTCGTGAAGTACGAACTATTCCTCAAGTACCTGCGCAGC
GGGCGACTGATCTGTTGGCAGCCATTTCATACAGTCGGTCACTGTGTATG
CGGATGAACGGCAGCGGCAAATTGGCAGTGCCGCCATGCGCATACATTCA
GTTGGGGTCGTTCTGCCAGTTGACTCAGCAGGCAGCCGCGACGTGCCATA
TGTTAAACTTTTTCACTCCCTCATGCTGTGAATCTGAAGTCCGCTTGCCA
CTATGGCCTGATCATCACGCATTCAGCACGTCGATCCGGCTTTATGAAAG
GCCTGCTCACGTTTTTTCTCGATATTCGGGATGCCTTGCTCTTATCTTCA
TGGTCCCCTCTCACCCACGCGCTTTGTCATGCGTTGCCTCATTTGCCTCA
TGTGGCGCGCACGCTACCGCAGCCGGCTTGATCCCTGGGGTAATATACGG
GAAGGGGCTGGACGGCACTGACTCCAAGATCATGATGTGCGTGCCGGAGC
GCTCTTTGCAGAAGGAGATGCGGCAAATGCAAGAAAGGCAAGTCACTCAC
TTGAAGTATTTCTTGAAGTAGTTTCAACGACTCTCCCGTCGCGCAGCAAG
AAGGCAAGCTCAAGCAACATGACGCATGCCACCTGAATGCAGATTTTGTC
ACGAAGTGCTGCAATGCTGGCCGGCGACAGCTTTACGTGGCTTGCCATCC
GTTACAACTTTAACTGCTCCCTCGTCCATTCACTTGAAGCACTCGCGGTC
GACGGGCTACAAAAGCTACTCCAGTGATACACGCAACGCGGACAGCGCGC
ATCTGCCGTGGCACAAGCACCGCCGAAGCCGACTACAGACCAGTCACCAA
GCACCTGTCGGCCGGTACCCCTCCAAACAACAACAAAACAATATGTGGCT
GCAGACACAGCGCCGGGGCGCGCAGTTGCGCTCTGTGTGATACCAGCCTG
CTCTGCAGCGCTGCAAGGGGCAGGTCGCAAGCTGCTCTGGCCAAGCGCGG
CCGTTACGCGCCGTGCGTCGAAGGCGGCGGTGTCGCGACGGCTTTGGCTT
CTGCGCACTGCTAGACTCTCGACTGCGTGTTCTCTGGCGAGATGAGGCGG
CGTCTCATCCTAGCTGGTACCAGCCAGCGTAAAACGCCAGAAATTTTATG
CGGGCTATGTATGCGCTACAATCACAATCCGGTTGCCTTCCCCTCCTCCC
TCCTCTTGTCTTTTCTGCGCGCCCCGGTCAGCCCTGTATGAACGCACCCG
TCAGCCCTGTATGAACGTGGCGCGCTCACCGCCGATTGCATGCTGGCCGT
GCCCCTGCGCGCTTTCTCGCAGTTTCCAGAACGTTCCCTACCTGGTGTCG
GTCGACGGCGCCGACCCCGCAGACGCAGAGCTGGTCTTCCCTGCCTACGT
CGAGATCAATAAGCTCAACGACAGGTGGGGGCTGGGCGAGCACTGCTCTT
GCACGCTTGTAATGTAACGCATGGCTAGGATGGCCTTGCTCGGGTTGCAG
TTAGACAGTAGCAGGCGCGGGGGTGGTTTCCCCCACTCTGCGACAAGCTC
AAACGCCAGGTGCATGTTCTTCAGTGCGTATGCGCCGCGTCGTGACGGAA
GCCCGGCCGTTTTGCGGATATCCCTGGAGGTTGAAGTGTCGCTTGTTGAA
GTATGAATGTACGTGGCGCATCACGGCGCAAGCCTTGACGTGAGCGAACC
GCCGATCGTGGCCTGTATGGAGATGAACAAAGCTCATTTGACGGGTAGGA
AGACTCTGAGTGTTTGCACGGGTCACAAGTGAGTGAGTAAATGAGTGTGG
CATCGCTCAGGCAGCGCGTTAACAGCAGGTTCTTAGAGAAGAGCCAACCT
CTGAGAATTTCTGGTCCATGGTTCGAGTCGGCCTTGTGATCACACATTTA
TGTCTTCCTCATCACAAAATCCATGCAAAATGGCAAGCTGTTGAGCTGAT
GTTATAAACAAAATCAGTGACACGATCACGTCTTGCAGATGCCAAATCAG
AGCCTTGCTGCGGTGCTTGTTCAAGTGTGCGGCACGAGTACAGCTACAAG
AGCGGCTCGCACAAGCCACAGGCTGCAGCTCACCACCCAAGCAGGTGGTG
ACACTGATTAGACCGACAGTGATGCTGGACGTGTGAACTACATGTGCATG
GAGAGATGCACCGCAACATTGCAGCGGCGTGAGTGTCGTTCATTCGCGTA
TGTAGGCAACGAACATGACCATGCAAGTACCCAGCCACCGTTGTTGTTGA
ATTGCCTTGAGGGGGTTTGGTCCAGGAATTCTGAACCTGTGAAGCCTCTT
GGTGTGCGTATGTTGTGTACCTTGAAGTAAAATTGTGCATCCCACCCTCA
GGTGCCCGCCCCGCGTTGGCAACAAAGTGTACCTGATTTTCCAACGCACA
TCAGGCAGTTCTTATAACCCCCAGCACTGACTCACCCGCATGCGCCGCTG
TCCACTGCCAGGTTTCAGACGGTGAACTGGCTACGCTACCGCGTGGGGCG
GCCACTCAGCGTGCCAATGCGCCTAGGTATGTAGGACGGACACAAGTTCA
AACCGTTAAAATACAACTTCAACTACATGCCGCTACGTACAAGAACAAAT
CCCGCAGCATTGCGCACTTGATACGGTGAGAAGGGAAGAGCTCGCTGATA
CGATTTGCCAGAGACTTGCTGCCACCTGCGCTCAGACCCCGCACCGCCCG
CAGTGTGTGTTGCTCAACATTTCTCCAGGCTTTGTTCTCATGGGGGTGAC
CCTGTTGCATCCTGAGGCTCATTGCCAGCTGCTGCCACAAATACGTGACC
TCTTGCCGTTGCTCTCTTGCAAGCCGGGACTTTCTGCCACTGCGCTCACT
GCGCGCTTGAGAGGTTGTGGCGTGTCATGCGTTTTTCACGCGCACACGCG
CTGCAAAAGCCTGCGCCAGCACCGCTGTTGCGCCAGAAGCTGATACGGCA
GCGGCGCTGCAGACCCGCATTGCGGCGCATCTCGTGCGCTGCAGATCTGC
ATTGCGGCGCAGCTCGTGCGCTGCCTCGCGGCTGGTCTTGCTGCACGGCT
GTGCGCGCTCTGTAGTGTGCCGCAGTGGGTGCTGCACTCAACCGTACTGC
AGTATGTACTGAACTTGCTGTTATCTGCCGCCGCCGCTGCGTCGTGCCGC
GCCGTGCAGTGAATGACTGACCGCTGTACTCGCTGCGCAGCTGTACTTGC
CGTGTACTGCGTCGCTGAACTCACCGTACTCCGCCGCAGCCGCGTGCCGC
GCCGCGCACGTAATGAGGAGCTGTCGCTGTCCATGCCTCGCTGTACTCGC
TGCGCTGCTGTACTTGCCGTGTACTGCGTCGCTGAACTCGCTGCACTCCG
CTGCGCCGCCGTGTACTGCGTGCGCAGTCAACGAGGAGCTGTCGCTATCA
ATGCGGCGTGGCGCGTGGGTTCAGAAGGTCGAGCGGCGCGTCGACATCCT
GGTGAGCACTGCCGTCGTTGCGGCGCAAAAGCAGCAGTGCTCCGGTTCGC
AGCTCTTCATCTACGACTGCCTGTATGTTGCAACACTGTTCGACAAATCA
GCATGAGCATGTGAGTGCGCGCGCGCGGCCGTGCGACGCCGCAGCAGTGC
AGCGCCGCGGCGGCGCGCTGCTTCCGTCGTGGCTTGCTGCCCGTGCATTG
CAACACCATGACAAATCAGCATTGAGAAACTGCGCGCGGTACACACGCGT
CATGCGCCGATCGACCCGCCGTTCTTTCGATGCCGAAGCGTCCACATCTT
GGTGAGAGCGCACACGCTGCTGTCGCTTCGGCGCAGCAGCAGCCGCGCCG
CGGTCCGCAGCGCTTCGTCATGACATGCTGCCTGTATACTGCAACACCAT
GGCAAATCAGCATTGACAAAGTGGTACCTGCTCGCGACAGTCGGTCGTGC
TGTCCTTTCGACGCCAAGGCAGTGCCACATGTCCCGTTATTTCTTTCTGT
CGTACCAAGACTCTGATTCTGACTGACCTGCATGTTCGTTGCGATGCTGC
GTGCCCTTTCGCTCCCTGTGTGCCGCAGATTTCATCCATGGACCCAGCAT
CCATACCAAAATACATCGACGTGAGTGCAGGTTTTGTACAGGATTCAAAT
GTGGGAGTACAGCATCGTACTGCAGTGAACGCTGTGAAGTCCTTTGTATC
AGCTGGCACAGCAATGTCATGTTGATGCTGCTGATGAGGGCAGCGCATCA
CACATGCTGAGAAATTAGTTTGTCACGCAGCGGAGGTGACGCGGTTCCCG
AATTACAACGTACCTTTGATAAGTTAGGTATTTCATTAAACGAACAAAAA
CGCAGCGGAGGTGACGCGGTTGCGGCTTGTGTGGATTATCTGATCACAAC
GAGCACTCGGCAAGTAGGCCGAGTTGAAGATGTCGCATGCGTCTTTGATT
AGGGTTAGCATTGCCAACGCTCCTCAGCCAACCCTGAATCTTAATCCTAA
GCGGCACTGACCGCACAGGGTGCTGTGCGTCCGACCAGCGCACAGGGCAC
ACCTTCAAGTCCCTCTCAGGTGTGATTGATGAATGACAGCGTCGTCATGT
GCGCTGGATGCGCGTGCGCGGTCTGCGTGCGCTCGCGCTGTGAAGCGCGC
CTTGACTTCTGTTGGAGAACATGGCAGTTGCATGCTCGTTGCCGGTTGCG
CGCCTGGCGGTTACGGCAGTTACACTGCTGGTACACAGGCCACAATAATG
TGAAGCGCGCCTTGAATTTCACAGCATGTTCAAAGGGCCTATACAAGACA
GGCAGTCGATGCGAGTCGCTCAGAGAGATCCTGATGGTTCGCGAGGGGCT
GTGTTGGAAGCTTTTCAATGTTCAGCACGGCGGAGGACAGTTGCATCAGA
CTCATTCATACTTTTCAGTTTGTAGATGGGAATATTCAATTGCCCATGTG
GGCCTTGACTGATGCGGCCGCCACAAACGTTTTTACAAGCACGTACTTTG
AAGTGTCATTCATATTTTGGACTTTCGTGTACATGTCTGTGTAGAAGTAT
TTCTTGCACTTTCCGTGCAAGTACTTTGAAGCATCATATATGAAAACGAA
TCAAAAGATTGTAGAGCTCTAGGTGACAAGGGATGATCAGCCGCAAGTGC
CTTCCACCAGTAATATATTTTGGGTCTCGTATACTTATAATAGTATATAT
TTTTTGCTTCGTTTATAGGTGGATCTGACGGGCGTCAAGGCCGGCGACAA
GATTGACGCCAAATACCTCGTGCTGCCGCCGGGCGTGCAACTTTTCAGGC
CCGAACAGCCGTTCAAGATCGGCTGGAGCATGGGGACAGTCAGAGGTGAG
GCCCTGCTCACTGCAGACCGTACTGAGAAGAGTCAATTACTCTCCAGCGC
AGAATCAGAATAAACCAAAGAAGGGCATGTGAACTCACATGCCTTTCTAA
TGCATCAGATACTGCGAAGTACGTCGATACTGTTGTCAGAAAGAGTCAAC
GGATGAAGCACTCGAGACGCTCTCCACCATGGCAAACTCACTCAGCGCGT
GTGAGCACCATGAACCTTAGCGACAAGACATGGATACCTGCAGCAGGTGT
TGCTCAGATCATATGGGCTCTCGTGCGCCCCTTGACAAATATCAACAAGA
AGTCTTGTGCGCGTACCCCAGTATTAATTCAAGCAGCAAATACACACTAA
GCCTGGCCCATGGTGCCAGGGAGAGTTATCGAAAAGGCTGCACTGGGCAC
TTGAGCCAGATATACCCGATACCCCCCCCCCCCCCCCCCCCCCATGCCTG
CTCGGCTGTATGGAAACGCTTGGGGTTCAGTCTTATGTGCAGTCAATTAT
GATGTAGAGCAGCATGAGACGTACTAGACTTATGGCAATTTACTCGTGCT
TGAGCATTGTGCACCTTCGCAGCAAGACATTGACACTCTGCAGCAGTTTT
TGCGCAGATGATCTTAGCTCTCTTGCACCCTTGATTTAATGAACAACAAG
TACTTGTGTGCTCAGCTTGGCTGTGCAGCTCATACGCGCTCTCTCGCCGT
CGATGAAATCAACAAGAAGTACTTGTGTGTATACCCTTGATTTTACCCGA
GCAGCAAATACACCAAACTCTCAGCCCGTGATGTTAGCAGCAAGATTTGC
GCTAGGCACTTTCAACCCACACTTACCCAACCTCATGATGCTCGGGGGTC
GGTTTGCACAGTCATTTCTGATGCAGCTCAACACGGAATACTCAATATCC
ACCTGAGTGGCATCAAGCATGTGTACCTTGGCAGGTACAAGGAGGGCACT
GCCAAGTGCGCAATGACACAATCTCGTTGGAGAGCACGCTGTCTTTGGCA
GCTGGCGGCGTGTTCAGAGCGCGTCCCGCATTTTTTCGCACGTGAAGTGC
TAGAGGTAGCGTACTCTTCTTCAAGGCAATGGAATTGCTTATGTTGCACA
CATGCTTCAATCCCCGCCCTGAGGGCTTCCTTTCAGGTTCTGACTGCTAC
AATCTGACCTCGTCGCGCTGGCGACTCGCATTCTGGCAGAGCACTGATGA
CCCTCTCCTTTGATTTTGCTTTTTCTGGGCGTTTTTTCATTCAAGTCTTT
CTCCTGTTTTTTCAATTGGAGGAGTTTGGCCGCCTGTAGGTATTGAAGCT
ATAAATCCATGGGGTGTTCCATTTTTAATCACTTGATTACTATTAGGTTC
TGGATTCACTTCAACATGGGCTCATCACGCTGCTGCGCTGCTGCTGCCGC
AGGCAAGAAGCTGCCCAAGGACGCAGAGTCGGACAGCGACGACGAAGACG
CGGCATGAAGCCTCTGCCGAGCACTGATGCTAAATGCATCGCAGCATGCA
CTATGCCGCGCGTGCTCAAATATACACATCGTGCAC
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Coding sequence (CDS) from alignment at Contig_86:539893..548578-

>mRNA_13710 ID=mRNA_13710|Name=jgi.p|Trimin1|351304|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_86:539893..548578- (Tribonema minus UTEX_B_3156 )
ATGTTTGTACATCGGGTGTGCTGCGGGAGCCTGCGGCGGCGAACAGCGGC
GTTGGCTCTGCAGCAGAATGTCCCGCCATCAGCAGGTGCAGCAGCGCAAG
TAAGGTGCATGAGCTCGCACTTTCCGGACGAGTCGCGCATTGGAGAGCAC
AGCAGGGTGTTGCACGCCGTCACCAGGGACCCATTGGGAGGATCAAAGCG
ATCTGCGGAGCTCAGAGAAGCAACATCCCACGCGCTGGAGAGCCAGCGCC
AGAATAAGCTCGCGGCTTCCAGGGTGTTCCCGCTGGGAGCGGCAACTCGA
CCCCAGCGCGCCGGCTTGATCCCTGGGGTAATATACGGGAAGGGGCTGGA
CGGCACTGACTCCAAGATCATGATGTGCGTGCCGGAGCGCTCTTTGCAGA
AGGAGATGCGGCAAATGCAAGAAAGTTTCCAGAACGTTCCCTACCTGGTG
TCGGTCGACGGCGCCGACCCCGCAGACGCAGAGCTGGTCTTCCCTGCCTA
CGTCGAGATCAATAAGCTCAACGACAGGTTTCAGACGGTGAACTGGCTAC
GCTACCGCGTGGGGCGGCCACTCAGCGTGCCAATGCGCCTAGTCAACGAG
GAGCTGTCGCTATCAATGCGGCGTGGCGCGTGGGTTCAGAAGGTCGAGCG
GCGCGTCGACATCCTGATTTCATCCATGGACCCAGCATCCATACCAAAAT
ACATCGACGTGGATCTGACGGGCGTCAAGGCCGGCGACAAGATTGACGCC
AAATACCTCGTGCTGCCGCCGGGCGTGCAACTTTTCAGGCCCGAACAGCC
GTTCAAGATCGGCTGGAGCATGGGGACAGTCAGAGGCAAGAAGCTGCCCA
AGGACGCAGAGTCGGACAGCGACGACGAAGACGCGGCATGA
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