mRNA_13684 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|336986
Unique NamemRNA_13684
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|336986 vs. uniprot
Match: A0A835YRP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP9_9STRA)

HSP 1 Score: 592 bits (1525), Expect = 1.840e-207
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 1 
Query:    1 MRDQLAELKAGGLGGCQLVCRALQRHMKSSRVQAWGLSAVMALALSQQNAVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAYLITECKDNHNALRAXXXXXXXXXXXXXXXRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHALRAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALLAAVRACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTARDNAAAXXXXXXXXXXXXXXXXXXAPDNIPVQDASALPVLRGAIYCLAQHPANRAMLPAGGVELLTEALLAHADAERNAQQQTLEDXXXXXXXXXXXXXXXXXXXXXXRQQRATDAANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAAAQRTLAKLQAKLKRVREVLGSDDAGSAAPQQRSAHVAAAAATGDENGHKQKKQRAG 1452
            MRDQLAELKAGGLGGCQLVCRALQRHMKSSRVQAWGLSAVMALALSQQNAVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAYLITECKDNHNALRAXXXXXXXXXXXXXXXRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHALRAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALLAAVRACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTARDNAAAXXXXXXXXXXXXXXXXXXAPDNIPVQDASALPVLRGAIYCLAQHPANRAMLPAGGVELLTEALLAHADAERNAQQQTLEDXXXXXXXXXXXXXXXXXXXXXXRQQRATDAANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAAAQRTLAKLQAKLKRVREVLGSDDAGSAAPQQRSAHVAAAAATGDENGHKQKKQRAG
Sbjct:    1 MRDQLAELKAGGLGGCQLVCRALQRHMKSSRVQAWGLSAVMALALSQQNAVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAYLITECKDNHNALRAXXXXXXXXXXXXXXXRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHALRAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALLAAVRACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTARDNAAAXXXXXXXXXXXXXXXXXXAPDNIPVQDASALPVLRGAIYCLAQHPANRAMLPAGGVELLTEALLAHADAERNAQQQTLEDXXXXXXXXXXXXXXXXXXXXXXRQQRATDAANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAAAQRTLAKLQAKLKRVREVLGSDDAGSAAPQQRSAHVAAAAATGDENGHKQKKQRAG 484
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BLAST of jgi.p|Trimin1|336986 vs. uniprot
Match: A0A836CAT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 9.130e-48
Identity = 149/334 (44.61%), Postives = 177/334 (52.99%), Query Frame = 1 
Query:    1 MRDQLAELKAGGLGGCQLVCRALQRHMKSSRVQAWGLSAVMALALSQQNAVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAYLITECKDNHNALRAXXXXXXXXXXXXXXXRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHALRAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALLAAVRACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTARDNAAAXXXXXXXXXXXXXXXXXXAPDNIPVQDASALPVLRGAIYCLAQHPANRAML---PAGGVELLTEALLAHADAERNAQQQ 993
            M++QLAEL AGGL GC+L+C+A+Q H +++  Q+WGL A+ A+A  QQ+A+RL                             +  L+T+C +NH     XXXXXXXXXXXXXXX        AL  A+RLA DPDDSAQLG  GVC HA+  +TAAA    AA            A  NL+ LAAN ARI  AGGCAAL+ AVR  P DA VQ WAWL                      LA  AYR ARD AAA                  A    P +DA+ L  L+ A++ LAQH ANRA L   PAG  ELL EALLAHA AER   QQ
Sbjct:  121 MKNQLAELNAGGLDGCRLMCQAMQLHPQANLTQSWGLFAITAMAQCQQDALRLGRAGACVVTVQALRSHTQGADLQAHGCAAVVNLVTDCAENHGXXXXXXXXXXXXXXXXXXXXXXXXXXXALGTAARLAIDPDDSAQLGAAGVCAHAVAVLTAAATAPDAAXXXXXXXXXXXXA--NLSALAANRARIGDAGGCAALVGAVRDRPHDAHVQEWAWLAXXXXXXXXXXXXXXXXXXXXPLAAAAYRRARDAAAAAA----------------AAGEAP-RDANTLLALQAAVFHLAQHAANRARLVMPPAGDAELLAEALLAHARAEREEAQQ 435
[Close]
BLAST of jgi.p|Trimin1|336986 vs. uniprot
Match: A0A836C902_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C902_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.450e-7
Identity = 90/254 (35.43%), Postives = 106/254 (41.73%), Query Frame = 1 
Query:  247 IAYLITECKDNHN-ALRAXXXXXXXXXXXXXXXRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHALRAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALLAAVR-ACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTARDNAAAXXXXXXXXXXXXXXXXXXAPDNIPVQDASALPVLRGAIYCLAQHPANRAML---PAGGVELLTEALLAHADAERNAQQQ 993
            +A L+T+ +++H  AL A                D+ VQ+NAL AA++LA DP DS +LG  GVCE AL A                                           CAALL  +R    R A  +                           +A+ AYR ARD AA XXXXXXXX            D    QD SAL VLR  I  LA HPAN A L   PAG VELL EALLAH    R+A QQ
Sbjct:   28 LANLVTDGEESHGVALSAADACALVTPALETRPDDHDVQANALEAAAQLALDPADSTRLGAAGVCERALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-CAALLLVLRNTTARGAKARXXXXXXXXXXXXXXXXXXXXXXXXXXXVAMAAYRDARDAAAXXXXXXXXX------------DMDTSQDTSALLVLRAVIAGLAAHPANAARLAMPPAGDVELLAEALLAHG---RDAAQQ 265
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336986 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YRP9_9STRA1.840e-207100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAT7_9STRA9.130e-4844.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C902_9STRA6.450e-735.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:248851..250656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|336986|MIX45749_2_19
Hectar predicted targeting categoryother localisation
TranscriptId337308
TrackFilteredModels1
ProteinId336986
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336986gene_13684Tribonema minus UTEX_B_3156 geneContig_86 248851..250656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336986Trimin1|336986|MIX45749_2_19Tribonema minus UTEX_B_3156 polypeptideContig_86 248851..250656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13684_2exon_13684_2Tribonema minus UTEX_B_3156 exonContig_86 248851..250077 -
exon_13684_1exon_13684_1Tribonema minus UTEX_B_3156 exonContig_86 250429..250656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13684CDS_13684Tribonema minus UTEX_B_3156 CDSContig_86 250429..250656 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13684 ID=mRNA_13684|Name=jgi.p|Trimin1|336986|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1455bp|location=Sequence derived from alignment at Contig_86:248851..250656- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGACCAACTGGCGGAGCTCAAAGCAGGAGGCCTTGGCGGGTGCCA
GCTGGTGTGCAGGGCGCTGCAGCGGCATATGAAGTCCAGCCGAGTCCAGG
CATGGGGGTTATCTGCCGTCATGGCCCTGGCGCTGAGTCAACAGAACGCC
GTCAGGTTGGGACGCGCCGGCGCGTGCGCACGGGCCGTTGAGGCGCTGCG
CAGGCACGCTCAGTGTGCCAGTGTGCAGGCATGGGCGTGCGCGGCCATCG
CGTACCTGATCACGGAGTGCAAGGACAACCACAACGCCCTACGCGCCGCT
GGCGCGTGCGCGCTCGTCGCCGCGGCGCTGACGACGCACACGAGAGACAA
CGTCGTGCAGTCAAACGCCCTCTTTGCAGCGTCGCGGCTGGCCGCTGACC
CAGACGACAGCGCTCAACTTGGCAACGACGGCGTCTGCGAGCACGCGCTG
CGCGCAATGACCGCCGCCGCGCCGCCCGCGTCTGCGGCGCTCCTGCCGTA
CCCCGTGCCCTTCTCGGCGCTCATGGCGGTGGCGAATCTGGCAGAGCTCG
CCGCCAATGGCGCGCGCATCAGCGGCGCCGGCGGCTGCGCGGCGCTGCTT
GCTGCGGTGCGTGCCTGCCCGCGCGACGCGGCCGTACAGAGGTGGGCATG
GCTCGGCATCAGCCGCCTCGCGAAGGACCCCGAGACCGCCATGAGGCTGG
GTGATGCGGGCGCGTGGCTACTGGCAGTGACAGCGTACCGCACGGCGCGC
GACAATGCGGCGGCGGCAACGGCGGCACCGGCAGCGGCGGCGGCAGCGGC
GGTGGCGGCGGCTGCGGCGGCACCAGACAACATTCCAGTGCAGGACGCCA
GCGCGCTGCCGGTACTGCGCGGTGCCATCTACTGCCTCGCACAGCACCCC
GCCAACCGTGCGATGCTGCCGGCGGGCGGCGTGGAGCTGCTGACAGAGGC
GCTGCTGGCGCATGCGGACGCGGAGCGCAACGCTCAGCAGCAGACCCTGG
AGGATGCGCAGCGCCAGCTCGCGCAAGAGAGGGAGCGTAGCGCAGCGGCG
CAGCTTGCGCTTGAGACAGAGCGGCAGCAGCGTGCAACGGACGCGGCTAA
TGCGGCGGCCGCGCAGCAGGAAGAAGCGGCCAGGGAGGAGGCGCGGCGCG
CCGCGGCGGCAGCGCAGGCGGCAGCGCTCGCGGCAGCGCAGGCGGCAGCG
CTCGCGGCAGCGCGGCAGAAGGTGGTGCAGGAGCGCGAGGAGGCTGCAGC
CCAGCTGCTGCAGAGCAACAACGCGAGGGCTGCTGCGCAGAGGACGTTAG
CCAAGCTACAGGCCAAATTGAAGCGCGTCAGGGAGGTGCTGGGGAGCGAC
GACGCGGGCAGCGCGGCTCCGCAGCAGCGCTCAGCGCATGTCGCCGCAGC
TGCTGCCACCGGCGACGAAAACGGTCACAAGCAGAAGAAGCAGCGCGCGG
GGTGA
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protein sequence of jgi.p|Trimin1|336986

>Trimin1|336986|MIX45749_2_19 ID=Trimin1|336986|MIX45749_2_19|Name=jgi.p|Trimin1|336986|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=485bp
MRDQLAELKAGGLGGCQLVCRALQRHMKSSRVQAWGLSAVMALALSQQNA
VRLGRAGACARAVEALRRHAQCASVQAWACAAIAYLITECKDNHNALRAA
GACALVAAALTTHTRDNVVQSNALFAASRLAADPDDSAQLGNDGVCEHAL
RAMTAAAPPASAALLPYPVPFSALMAVANLAELAANGARISGAGGCAALL
AAVRACPRDAAVQRWAWLGISRLAKDPETAMRLGDAGAWLLAVTAYRTAR
DNAAAATAAPAAAAAAAVAAAAAAPDNIPVQDASALPVLRGAIYCLAQHP
ANRAMLPAGGVELLTEALLAHADAERNAQQQTLEDAQRQLAQERERSAAA
QLALETERQQRATDAANAAAAQQEEAAREEARRAAAAAQAAALAAAQAAA
LAAARQKVVQEREEAAAQLLQSNNARAAAQRTLAKLQAKLKRVREVLGSD
DAGSAAPQQRSAHVAAAAATGDENGHKQKKQRAG*
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mRNA from alignment at Contig_86:248851..250656-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13684 ID=mRNA_13684|Name=jgi.p|Trimin1|336986|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1806bp|location=Sequence derived from alignment at Contig_86:248851..250656- (Tribonema minus UTEX_B_3156 )
ATGAGGGACCAACTGGCGGAGCTCAAAGCAGGAGGCCTTGGCGGGTGCCA
GCTGGTGTGCAGGGCGCTGCAGCGGCATATGAAGTCCAGCCGAGTCCAGG
CATGGGGGTTATCTGCCGTCATGGCCCTGGCGCTGAGTCAACAGAACGCC
GTCAGGTTGGGACGCGCCGGCGCGTGCGCACGGGCCGTTGAGGCGCTGCG
CAGGCACGCTCAGTGTGCCAGTGTGCAGGTGAGCTTCAGACGCTGACACC
ACTACATGCATGCAGTGGTGAAGATTGCTGCGTAACCTGCCATGGCAGCT
TGTCCCAATGTGCACCCTGAGGCTTGAGGCTAGGTAGCCACATGTGTGCC
AGCGTACATTCTCTCGGCCGTGATGTGCGCGCATGACGTCATCAGTGCTG
CACGATTACGTCACACTGCAAAAAAATTGAGAGACGTGACGGAAATCCTT
TGTTCGCAAGTGCAGCAAGTGCAGCCATTTGCCGAACCACAGTCTTTGAT
GTTCGCTCAGTTGCTGATGTGCAACACTTTGGTACTGTGCAAGTGACTGC
GTTGCCAATGCACTTGCGTTCATGTTCAGGCATGGGCGTGCGCGGCCATC
GCGTACCTGATCACGGAGTGCAAGGACAACCACAACGCCCTACGCGCCGC
TGGCGCGTGCGCGCTCGTCGCCGCGGCGCTGACGACGCACACGAGAGACA
ACGTCGTGCAGTCAAACGCCCTCTTTGCAGCGTCGCGGCTGGCCGCTGAC
CCAGACGACAGCGCTCAACTTGGCAACGACGGCGTCTGCGAGCACGCGCT
GCGCGCAATGACCGCCGCCGCGCCGCCCGCGTCTGCGGCGCTCCTGCCGT
ACCCCGTGCCCTTCTCGGCGCTCATGGCGGTGGCGAATCTGGCAGAGCTC
GCCGCCAATGGCGCGCGCATCAGCGGCGCCGGCGGCTGCGCGGCGCTGCT
TGCTGCGGTGCGTGCCTGCCCGCGCGACGCGGCCGTACAGAGGTGGGCAT
GGCTCGGCATCAGCCGCCTCGCGAAGGACCCCGAGACCGCCATGAGGCTG
GGTGATGCGGGCGCGTGGCTACTGGCAGTGACAGCGTACCGCACGGCGCG
CGACAATGCGGCGGCGGCAACGGCGGCACCGGCAGCGGCGGCGGCAGCGG
CGGTGGCGGCGGCTGCGGCGGCACCAGACAACATTCCAGTGCAGGACGCC
AGCGCGCTGCCGGTACTGCGCGGTGCCATCTACTGCCTCGCACAGCACCC
CGCCAACCGTGCGATGCTGCCGGCGGGCGGCGTGGAGCTGCTGACAGAGG
CGCTGCTGGCGCATGCGGACGCGGAGCGCAACGCTCAGCAGCAGACCCTG
GAGGATGCGCAGCGCCAGCTCGCGCAAGAGAGGGAGCGTAGCGCAGCGGC
GCAGCTTGCGCTTGAGACAGAGCGGCAGCAGCGTGCAACGGACGCGGCTA
ATGCGGCGGCCGCGCAGCAGGAAGAAGCGGCCAGGGAGGAGGCGCGGCGC
GCCGCGGCGGCAGCGCAGGCGGCAGCGCTCGCGGCAGCGCAGGCGGCAGC
GCTCGCGGCAGCGCGGCAGAAGGTGGTGCAGGAGCGCGAGGAGGCTGCAG
CCCAGCTGCTGCAGAGCAACAACGCGAGGGCTGCTGCGCAGAGGACGTTA
GCCAAGCTACAGGCCAAATTGAAGCGCGTCAGGGAGGTGCTGGGGAGCGA
CGACGCGGGCAGCGCGGCTCCGCAGCAGCGCTCAGCGCATGTCGCCGCAG
CTGCTGCCACCGGCGACGAAAACGGTCACAAGCAGAAGAAGCAGCGCGCG
GGGTGA
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Coding sequence (CDS) from alignment at Contig_86:248851..250656-

>mRNA_13684 ID=mRNA_13684|Name=jgi.p|Trimin1|336986|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1455bp|location=Sequence derived from alignment at Contig_86:248851..250656- (Tribonema minus UTEX_B_3156 )
ATGAGGGACCAACTGGCGGAGCTCAAAGCAGGAGGCCTTGGCGGGTGCCA
GCTGGTGTGCAGGGCGCTGCAGCGGCATATGAAGTCCAGCCGAGTCCAGG
CATGGGGGTTATCTGCCGTCATGGCCCTGGCGCTGAGTCAACAGAACGCC
GTCAGGTTGGGACGCGCCGGCGCGTGCGCACGGGCCGTTGAGGCGCTGCG
CAGGCACGCTCAGTGTGCCAGTGTGCAGGCATGGGCGTGCGCGGCCATCG
CGTACCTGATCACGGAGTGCAAGGACAACCACAACGCCCTACGCGCCGCT
GGCGCGTGCGCGCTCGTCGCCGCGGCGCTGACGACGCACACGAGAGACAA
CGTCGTGCAGTCAAACGCCCTCTTTGCAGCGTCGCGGCTGGCCGCTGACC
CAGACGACAGCGCTCAACTTGGCAACGACGGCGTCTGCGAGCACGCGCTG
CGCGCAATGACCGCCGCCGCGCCGCCCGCGTCTGCGGCGCTCCTGCCGTA
CCCCGTGCCCTTCTCGGCGCTCATGGCGGTGGCGAATCTGGCAGAGCTCG
CCGCCAATGGCGCGCGCATCAGCGGCGCCGGCGGCTGCGCGGCGCTGCTT
GCTGCGGTGCGTGCCTGCCCGCGCGACGCGGCCGTACAGAGGTGGGCATG
GCTCGGCATCAGCCGCCTCGCGAAGGACCCCGAGACCGCCATGAGGCTGG
GTGATGCGGGCGCGTGGCTACTGGCAGTGACAGCGTACCGCACGGCGCGC
GACAATGCGGCGGCGGCAACGGCGGCACCGGCAGCGGCGGCGGCAGCGGC
GGTGGCGGCGGCTGCGGCGGCACCAGACAACATTCCAGTGCAGGACGCCA
GCGCGCTGCCGGTACTGCGCGGTGCCATCTACTGCCTCGCACAGCACCCC
GCCAACCGTGCGATGCTGCCGGCGGGCGGCGTGGAGCTGCTGACAGAGGC
GCTGCTGGCGCATGCGGACGCGGAGCGCAACGCTCAGCAGCAGACCCTGG
AGGATGCGCAGCGCCAGCTCGCGCAAGAGAGGGAGCGTAGCGCAGCGGCG
CAGCTTGCGCTTGAGACAGAGCGGCAGCAGCGTGCAACGGACGCGGCTAA
TGCGGCGGCCGCGCAGCAGGAAGAAGCGGCCAGGGAGGAGGCGCGGCGCG
CCGCGGCGGCAGCGCAGGCGGCAGCGCTCGCGGCAGCGCAGGCGGCAGCG
CTCGCGGCAGCGCGGCAGAAGGTGGTGCAGGAGCGCGAGGAGGCTGCAGC
CCAGCTGCTGCAGAGCAACAACGCGAGGGCTGCTGCGCAGAGGACGTTAG
CCAAGCTACAGGCCAAATTGAAGCGCGTCAGGGAGGTGCTGGGGAGCGAC
GACGCGGGCAGCGCGGCTCCGCAGCAGCGCTCAGCGCATGTCGCCGCAGC
TGCTGCCACCGGCGACGAAAACGGTCACAAGCAGAAGAAGCAGCGCGCGG
GGTGA
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