mRNA_11289 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174656
Unique NamemRNA_11289
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA)

HSP 1 Score: 254 bits (649), Expect = 8.310e-86
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL 369
            GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL
Sbjct:    1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL 123          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.420e-33
Identity = 57/119 (47.90%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNR 357
            G    F G+G++VDT R   D +HRD+S+V ++GR+   Q+ + L GCNAN+RYWEGRDDF VL+++R+R+   ++N   L++D+RN+GRWRRC  ++  DLPR WA R+  GL   N+
Sbjct:  174 GMDAAFTGIGIVVDTKRNEGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIRV---NENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLAGNQ 289          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.830e-25
Identity = 52/123 (42.28%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAED---------AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342
            G  EKF G+ V+ +T R+  +          +HRD+S++ NNG +    ++  L+GC AN+R+ E RDDF V++S+R+RL+    NT+ +EVD+RN+GRWRRC+ I   D+P  WA +S VG+
Sbjct:  141 GIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEG-NTVAMEVDARNAGRWRRCSTIAHLDMPADWASKSNVGI 262          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YXL4_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.780e-22
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFS--SDNTLILEVDSRNSGRWRRCARID--KADLPRSWAYRSYVGLQVRN 354
            G A+ F GV V   T  R + A+H  +++V  +G  G A       GC+A LRYWEGR DF+VL++SRLRLR +  +D +L+LEVD  N+G WRRCA +    A LP  W  R+ VGL  RN
Sbjct:  152 GLADNFTGVAV---TIGRTDGARHA-VNLVVGDGSTGAAAARAAAPGCDAPLRYWEGRGDFSVLRASRLRLRRNGGADGSLVLEVDPHNTGLWRRCAIVAGAAAALPDGWERRAVVGLLARN 269          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A812USU1_SYMMI (LMAN2L protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812USU1_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 7.980e-22
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDAK-HRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342
            G  EKF+G+GVI DT+R  E+   HRD++++ N+G K    +  +++GCNAN R+   R DF+V  ++R R+  S ++ + + +D  NSG+W  C ++D   LP  W   +YVG+
Sbjct:   80 GSQEKFVGLGVIFDTFRNTENIHAHRDVTLLINDGEKTWEMMTEDIRGCNANFRFHAERADFSVTDAARARVLISGES-ISVSIDPTNSGQWTDCVKVDNPGLPNDWLKSAYVGI 193          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S2FHL9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHL9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.630e-20
Identity = 42/116 (36.21%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQV 348
            G +  F G GVI DT++ +E   H+D+S++ N+G +   ++M+   GC+A++RY EGR DF+V+ +SR ++ +  + +L L +D+ ++G W  CA ID+ DLP  +  + Y G+  
Sbjct:  125 GASSTFTGFGVIFDTFKNSE-RPHKDVSILVNDGTRSAEEMMSTAVGCDASVRYHEGRADFSVMHASRAKVTYK-EGSLTLSLDAESNGEWETCATIDRLDLPADFDSKVYTGMSA 238          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S0XEJ2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.880e-20
Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAED-AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342
            G  +KF+G+GVI DT++  E+ A HRD++++ N+G K    +  E+QGCN N+RY   R DF+V   S+ R+    ++ L + VD++N+G W  C  I    L + W  ++Y+G+
Sbjct:  125 GFIDKFVGIGVIFDTFKNTENLAIHRDVTILINDGEKTYEAMTQEVQGCNINVRYHNERADFSVTDMSKARITVDDNHRLQVLVDAKNTGEWTTCVDITDLPLQKDWLKKAYIGI 239          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.360e-18
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   16 FMGVGVIVDTYRRAE-DAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLI-LEVDSRNSGRWRRCA--RIDKADLPRS-WAYRSYVGL 342
            F GV V+VDT    +  A H D+S+V N+G +  A  +  L+GC A LR+ EGRDDF VLK+SRLR+++++   ++ +++D RN+GRWRRCA   + K  LP   W   ++VGL
Sbjct:  111 FTGVMVVVDTNPNDKAGANHFDVSIVYNDGSR--ADAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGL 222          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-16
Identity = 40/115 (34.78%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAED-AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342
            G  E+F G GVI DT++  E  ++HRD+S++ N+G      +M +L+GC+A++RY E R DF+V   SR ++   +   L++++D +N G+++ CA +D       WA  +++G+
Sbjct:  141 GSVERFTGFGVIFDTFKNTESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMSRAKV-IVTGKRLVVQIDGKNDGQFKDCAVVD-LPFAMDWAKSAHIGV 253          
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7R9U5N4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.270e-16
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 GCAEKFMGVGVIVDTYRRAEDA-KHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKAD-LPRSWAYRSYVGL 342
            G   KF+GVG++ DT+R  E   KHRD++++ N+G K    +   +QGC+A +R WE R DF V K++R ++        + +VD +  G W  C R    D +P +W   ++VG+
Sbjct:  121 GVNPKFVGVGIVFDTFRNTEALDKHRDVALLVNDGTKTVDDMYEVVQGCDAAVRVWEQRADFDVSKAARAKVEIVGREVRV-QVDEKEDGNWEECIRTTLPDTIPEAWLKSAHVGV 235          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835ZHK2_9STRA8.310e-86100.00L-type lectin-like domain-containing protein n=1 T... [more]
A0A835YN92_9STRA2.420e-3347.90Concanavalin A-like lectin/glucanase domain-contai... [more]
D7FTE2_ECTSI9.830e-2542.28L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YXL4_9STRA2.780e-2246.72L-type lectin-like domain-containing protein n=1 T... [more]
A0A812USU1_SYMMI7.980e-2238.26LMAN2L protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A7S2FHL9_9STRA7.630e-2036.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0XEJ2_9STRA8.880e-2037.39Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A835YWL8_9STRA4.360e-1844.74Legume-like lectin family-domain-containing protei... [more]
A0A7S2B8C4_9STRA1.330e-1634.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9U5N4_9STRA8.270e-1635.34Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:270256..271958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174656|e_gw1.116.78.1
BRITEko00000,ko00001,ko04091,ko04131
KEGG Pathwayko04141,map04141
KEGG koko:K10080,ko:K10082
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
Descriptioncarbohydrate binding
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3839@1|root,KOG3839@2759|Eukaryota
Evalue1.61e-25
Seed ortholog2880.D7FTE2
Hectar predicted targeting categoryother localisation
TranscriptId174978
TrackFilteredModels1
ProteinId174656
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174656gene_11289Tribonema minus UTEX_B_3156 geneContig_116 270256..271958 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11289_1exon_11289_1Tribonema minus UTEX_B_3156 exonContig_116 270256..270476 +
exon_11289_2exon_11289_2Tribonema minus UTEX_B_3156 exonContig_116 271808..271958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11289CDS_11289Tribonema minus UTEX_B_3156 CDSContig_116 270256..270476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174656Trimin1|174656|e_gw1.116.78.1Tribonema minus UTEX_B_3156 polypeptideContig_116 270256..271958 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGCGCGGAAAAGTTCATGGGCGTCGGCGTGATCGTGGACACGTACCG
GCGCGCCGAGGACGCCAAGCACCGCGACATCAGCATGGTCACCAACAACG
GCCGCAAGGGCGGGGCGCAGGTCATGACGGAGCTGCAGGGCTGCAACGCG
AACCTGCGGTACTGGGAGGGCCGCGACGACTTCACAGTGCTCAAGTCCTC
ACGGCTAAGGCTGCGATTCAGCAGCGACAACACCCTCATACTGGAGGTCG
ACTCGCGAAACTCGGGACGGTGGCGGCGCTGCGCGCGCATCGACAAGGCG
GATCTTCCGCGCTCGTGGGCCTACAGATCGTATGTCGGACTGCAGGTGCG
GAATCGATATATACATTTATAA
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protein sequence of jgi.p|Trimin1|174656

>Trimin1|174656|e_gw1.116.78.1 ID=Trimin1|174656|e_gw1.116.78.1|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNA
NLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKA
DLPRSWAYRSYVGLQVRNRYIHL*
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mRNA from alignment at Contig_116:270256..271958+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1703bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )
GGCTGCGCGGAAAAGTTCATGGGCGTCGGCGTGATCGTGGACACGTACCG GCGCGCCGAGGACGCCAAGCACCGCGACATCAGCATGGTCACCAACAACG GCCGCAAGGGCGGGGCGCAGGTCATGACGGAGCTGCAGGGCTGCAACGCG AACCTGCGGTACTGGGAGGGCCGCGACGACTTCACAGTGCTCAAGTCCTC ACGGCTAAGGCTGCGATTCAGGTGCGTTGAAAGCGCTGCATTCGCAGGTT GAGGGCTAGCGTTAGGTTAGGGGTAGGTTAGGGCTATCCCTGAGGTGCCT GAAGGGGTAGATTCAGAAGGTCAGGTTAGGCGTGAGAGCTGCAGGGTTGC AGCGCAGGTCTGCAGCACTGGGAAGGGCCGCGACGATTTCACGGTGTTCA AGTCTTCATGGCCAAGGCTGCGATTCAGGTGCGTTTGCAGGTTTTGCAGG ATGAGGATTATGATGAGGTTAGGGTAGGGTGAAGGTTAGGGTCAGGTTAG GGTTAAGCCTGAGCTGCTTAACATTAAAGGGTTAGGCCGAGGAGGAGGTG AGGATTAGGCGTGAGCTGCAGGCCTGCTGCACGACCTTGCAGTAGTGGTT ACGGCGCAACGGAATTTTGTAACAATTTGTACTCCAGATATCAATTTATA CTCTTGTCGTACCTCGAGATTGCACTTCGGTTGTCAAGCTGTCACGCCTC AGGCTCCAGTCCCTGTGCATTTGCGGTCCTTAGGGTCTGAATGAGGGTCG GCAACGCCATGGCGAGGAAGACCTTGAGGGCCAGGTAGTGATATGTCGCA TCTGCACTATTTTTAAATCCATGCCGCTTTGAACGATGGTAATGCCAGCT ACATCGGTTGGTGAGTGACCCTCGTGCCAGCTGCAAGCTTCATCATGCAG CAGTAGTGCGGCACGCAACCTGTGCACACTGTGTAGTACTCGTCGTTTAA TTGGTGTTCATTGAACTAGATGTTGAGGCTACTATACTAGGGATAGGGTT ACTAGGCCTACGCCTTACGCAACATGCATGCAGGGTCAGACAGCGTTGTA CAGGAGCCAAAGGTGTCTACAAATAGTTCAAGTACTTGCAGTACAGTGCA AAAGGCGCGGGCCTGCTGTTGGGTTGCCGAATGGAAAAGGATTGGAGCTG AGCTGGAGGTCCAGTTAGAGCCAGGGTTAGGGTGAGGGTTAGTCAGGATC AGAAAGGGTGGTGATGCCAGACCCCTCAAGTATCTGCAGTGTGCTACGTA TTTTGAAGGCCGCCCTTGCGAATTTGCGTGACTCTCCTCTTAGTGGCCAG TCTGCGTCCACGACCGTATCCGCCCCCTTTCTTATCCCAGGACCTGTATG GGTGCATATCCACATCAGTCTGGTCCTCAGCAATACCGCTCAAGCATCTC TTGGCCATCAAGCTGCTCATGACAATCGCAATACATTCATTTCTTCTCTG ACTGTTCATTGTGACCGTTCACTCTGACGTGTTGTTCACTACGTCCGCCA TGTGTCTGTCCTGACTTCTTATTGTAACCGTTTATTCCGACTGTCGCACG AGCAGCGACAACACCCTCATACTGGAGGTCGACTCGCGAAACTCGGGACG GTGGCGGCGCTGCGCGCGCATCGACAAGGCGGATCTTCCGCGCTCGTGGG CCTACAGATCGTATGTCGGACTGCAGGTGCGGAATCGATATATACATTTA TAA
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Coding sequence (CDS) from alignment at Contig_116:270256..271958+

>mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )
GGCTGCGCGGAAAAGTTCATGGGCGTCGGCGTGATCGTGGACACGTACCG
GCGCGCCGAGGACGCCAAGCACCGCGACATCAGCATGGTCACCAACAACG
GCCGCAAGGGCGGGGCGCAGGTCATGACGGAGCTGCAGGGCTGCAACGCG
AACCTGCGGTACTGGGAGGGCCGCGACGACTTCACAGTGCTCAAGTCCTC
ACGGCTAAGGCTGCGATTCAGCAGCGACAACACCCTCATACTGGAGGTCG
ACTCGCGAAACTCGGGACGGTGGCGGCGCTGCGCGCGCATCGACAAGGCG
GATCTTCCGCGCTCGTGGGCCTACAGATCGTATGTCGGACTGCAGGTGCG
GAATCGATATATACATTTATAA
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