mRNA_12212 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351274
Unique NamemRNA_12212
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A835YIA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA9_9STRA)

HSP 1 Score: 1923 bits (4981), Expect = 0.000e+0
Identity = 1152/1152 (100.00%), Postives = 1152/1152 (100.00%), Query Frame = 1
Query:    1 MASASSHLSIAVHGIRFEHTDAVSPAAVAGSSITLKCAVEGIAASELFSQLAPAEITVTLEEDAGEAGLLQGAVHHSVHTTPFEPSEETLGRIAAATYTIQAWLAQELLGAAHVQLSDVLAGETEAHIEVPLLLHGSNDPTGFLKVVLSCDEATADYCIGSSRLTLRELRIAGLPAAWRLAHGELQGLEGDAWQAKVQDLLAQPANQTFTYTLDWTAAGPAFDNNHNTTATSAADPQQPDAASTGSSAQPQLQLQQPPALPGALARFHTASGALQCRGGSSSXXXXXXXXXXGDWTIAFDAPPGALFLHRSSVHALRAAALAGARLCATVVRARAVPLVDPKAKKPPPPAKGKGAEPAPPPEAPWTLRTYLPLAPLAERPDLLNAELRGALEYGGGDSQSDSESDAARAALLSESGTALRLGARLSRALVTLPPVMAVTPGETVLRVAPPRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRRGDLDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRLDSALRAAAAANDVXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARYPVEEAEALAAALACCSSAQERGPLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWRAAAAAV 3456
            MASASSHLSIAVHGIRFEHTDAVSPAAVAGSSITLKCAVEGIAASELFSQLAPAEITVTLEEDAGEAGLLQGAVHHSVHTTPFEPSEETLGRIAAATYTIQAWLAQELLGAAHVQLSDVLAGETEAHIEVPLLLHGSNDPTGFLKVVLSCDEATADYCIGSSRLTLRELRIAGLPAAWRLAHGELQGLEGDAWQAKVQDLLAQPANQTFTYTLDWTAAGPAFDNNHNTTATSAADPQQPDAASTGSSAQPQLQLQQPPALPGALARFHTASGALQCRGGSSSXXXXXXXXXXGDWTIAFDAPPGALFLHRSSVHALRAAALAGARLCATVVRARAVPLVDPKAKKPPPPAKGKGAEPAPPPEAPWTLRTYLPLAPLAERPDLLNAELRGALEYGGGDSQSDSESDAARAALLSESGTALRLGARLSRALVTLPPVMAVTPGETVLRVAPPRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRRGDLDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRLDSALRAAAAANDVXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARYPVEEAEALAAALACCSSAQERGPLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWRAAAAAV
Sbjct:    1 MASASSHLSIAVHGIRFEHTDAVSPAAVAGSSITLKCAVEGIAASELFSQLAPAEITVTLEEDAGEAGLLQGAVHHSVHTTPFEPSEETLGRIAAATYTIQAWLAQELLGAAHVQLSDVLAGETEAHIEVPLLLHGSNDPTGFLKVVLSCDEATADYCIGSSRLTLRELRIAGLPAAWRLAHGELQGLEGDAWQAKVQDLLAQPANQTFTYTLDWTAAGPAFDNNHNTTATSAADPQQPDAASTGSSAQPQLQLQQPPALPGALARFHTASGALQCRGGSSSXXXXXXXXXXGDWTIAFDAPPGALFLHRSSVHALRAAALAGARLCATVVRARAVPLVDPKAKKPPPPAKGKGAEPAPPPEAPWTLRTYLPLAPLAERPDLLNAELRGALEYGGGDSQSDSESDAARAALLSESGTALRLGARLSRALVTLPPVMAVTPGETVLRVAPPRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRRGDLDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRLDSALRAAAAANDVXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARYPVEEAEALAAALACCSSAQERGPLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWRAAAAAV 1152          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: D8LNE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 5.860e-59
Identity = 239/754 (31.70%), Postives = 322/754 (42.71%), Query Frame = 1
Query: 1348 PRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRR-------------------------GD-----LDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXX-PRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRL---------------------------------------DSALRAA-----------------AAANDVXXXXXXVES---AQLAAELEPRSAAAWGALAAALRAARY--PVEEAEALAAALACCSSAQERG------------PLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQN 3297
            P ++   KP  DV+ + + E+D FV+A L EY KLF                        + LFYAL++GG+YH F   LKPR+QR+VRKR    A P  +     D     LY  LV+ A  VL  R++++E    P Y++ DA  ++  +   LG+LA+DAEA    E A  RH+DRI+A                   T A+A+L+E R LL ++W   A    RR                         GD     LD AA+ L E LR    G+   L    V   AAV++E G++D A A++E  L   LP   E  DGY+TD  A   P    AL  I+RD       AR +L  A                        PRRTAV ++   C +LL+ GL   A                KA ERGL     +A R +  RL                                       D+A++AA                 +A+  +      V++   AQ A EL P     W ALA A  A       E A+A AA L    +A                PL  + RLG+L   LGR  E+KA +L   R W  P  WLG G A M LEQW+EAE A+Q A+RLD     VWG LALLLL+ G+ R  E               ++LLR++GN +V+  RL  AE+ LR++L+ +  +  +    H RR L DVLSA+N
Sbjct:  650 PSDVGPRKPARDVDVELKQELDEFVQASLEEYAKLF------LEPGADEDTQDLSAQDREKHLFYALNSGGLYHSFLGRLKPRVQRIVRKRFG--AVPEDSAEA--DAFISDLYVHLVEEAAVVLNHRIKNVETKATPSYITADADKSLELKVEHLGMLADDAEARGAREEATARHEDRIEAA------------------TEAAAELEEWRPLLARSWEKYALFSLRRNRTGQHQQHTQEAVPSAKNGNVSTIGDRGGESLDHAARCLEECLRVYLPGSDESLAAASV--LAAVSMEQGQLDRAWALMEKVLEQRLPSLKEGADGYETDELAGLVPRREHALRCILRDLMGDASGARRSLFLAVQSSKGEEARGAIGAIVSDDEPGTPRRTAVRVMHDACAWLLELGLPGMARRAFIVAEESERLAVKKAKERGLSVRTPSALRESSRRLKCYLILADAATAAIAADPDNSNTIASAALPGKGGSRPNEDAAIQAAEPAPAALGKAFGDQKQGSASEVMAMVYCAVDAERLAQEAVELSPGDPRPWQALAEACDAQGLIKATEAADAWAAVLDRMETAWRTSSASGEEPTSPTPPLRVYMRLGSLYNTLGRVEEAKACFLRACRAWRAPGPWLGCGAACMRLEQWQEAEDAMQHASRLDCNSSLVWGHLALLLLSMGEDRLQEADRALSQALCLGLADSSLLREIGNCYVAAGRLDAAEEALRKSLAADVNSHGNSGNPHTRRCLGDVLSARN 1373          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A6H5KT48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT48_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.390e-49
Identity = 249/848 (29.36%), Postives = 329/848 (38.80%), Query Frame = 1
Query: 1348 PRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRRG------------------------------DLDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCAL-LSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRL-------DSALRAAAAAND--------------------------------------------------VXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARY--PVEEAEALAAALACCSSAQERGP------------LAQHARLGALNLALGRPAESK---------------------AAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQN------------------------------CVAAAVGEYREVLLSTDAPA--AERQEALSRCAPLLKALGREAEL 3426
            P ++   KPP DV+ + + E+D FV+   V         XXX                  + LFYAL++GG+YH F   LKPR+QRVVRKR        +      D     LY  LV+ A  VL  R+++ E    P Y++ DA  ++  +   LG+LA+DAEA    E A  RH+DRI+A                   T A+A L+E R LL ++W   A    R G                               LD AA+ L E LR    G+   L    V   AAV++E G++D A A++E  L   LP   E  DG       + C  +  A  L + +  ++   A                               PRRTAV ++   C +LL+ GL   A                KA ERGL     TA R +  RL       D A  A AA  D                                                  V         AQ A EL P     W ALA A  A       E A+A AA L    +A    P            L  + RLG+L   LGR  E+K                     A +L   R W  P  WLG G A + LEQW+EAE ALQ A+RLD   P VWG LALLLL+ G+ R  E               ++LLR++GN +V+V RL  AE+ LR++L+ +  +  +    H RR L DVLSA+N                              C   AV EYR VL S  A    +ER+E L+RC  LL+ +GR  E+
Sbjct:  601 PSDVGPRKPPRDVDVELKQELDEFVQ---VSXXXXXXXXXXXGADMRREDMQDLSAQDREKHLFYALNSGGLYHSFLGRLKPRVQRVVRKRFGAVPEDAAEA----DAFISDLYVHLVEEAAVVLNHRIKNAETKATPSYITADADKSLELKVEHLGMLADDAEARGAREEAAARHEDRIEAA------------------TEAAAALEEWRPLLARSWEKYAFFSLRGGRSGQRRQHPQEVVPSAKNGNVSTLRSRGSESLDHAARCLEECLRVYLPGSDESLAAASV--LAAVSMEQGQLDRAWALMEKVLEQRLPILKEGADG-------KHCLRESLATRLWMTKLEENNGFARLNYFVFFFFHPRTEARGAIGAIVSDDEPRTPRRTAVRVMHDACAWLLELGLPGMARRAFIVAEESERLAVKKAKERGLSIRTPTALRESCRRLKCYLILADEATAAVAADRDNSNIIASTVVSGKAGSRTNEAAQAAAPAPAAAGKASGDEKQTSASDGMAMVPGAVDAERLAQEAVELSPGDPRPWQALAEACDAQGLIKATEAADAWAAVLDRTETAWRTSPASGEEATPPTPALRVYMRLGSLYNTLGRIEEAKVGKGAYNSVGPVNFEYAAVVKACFLRACRAWRAPGPWLGCGAACLRLEQWQEAEDALQHASRLDCNSPLVWGHLALLLLSMGEGRLQEADRALSQALCLGLADSSLLREIGNCYVAVGRLDAAEEALRKSLAADVNSHGNNGNPHTRRCLGDVLSARNSTSQLALSLSQSGKLPKHQSMLVTDDWSTSCPCQAVEEYRRVLESPSADVNDSEREEVLTRCGNLLRKMGRGDEI 1414          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A7S2GGG8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GGG8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.960e-30
Identity = 157/517 (30.37%), Postives = 222/517 (42.94%), Query Frame = 1
Query: 1969 LDEARALLTQAWLDMAACC---SRRGDLDAAAQALTETLRCAPGGAA--HPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRLDSALRAAAAANDVXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARYPVEEAEALAAALACC---------------------SSAQERGPLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGD-ARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWR 3438
            L   +A+  + W + A  C   S+  D  A  QAL          A    P +L  +    AV LE G+ + A  +L+ AL   L   S+      TD    R P     L+ I    + +   AR  L                          P+RT+VA+ L     LL+  L   +                KA ER L     T   + L++    L+A  A  +       V  A +A  ++P    AW  LA       +      A A AL C                      S   +R PL  + RLG L + L R  E+   +L G   W   SVWLGAG++ + L ++EEAE +L +AN ++ A P VWG + LL L  GD +R +E               A+LLR++GNA+++VD L  AED+LRR+L+ + +A       H RRRLADVLSAQN + AAV  YREV+ +T A   E + A++ C   L ALGR  E+ + R
Sbjct:   18 LPPLKAIRGKTWFNYAEFCLRVSKSSDSPATVQALRARAAMCLANAIDEEPTSLPALHLRGAVLLEQGKHEEAATILQSALHLGLQTQSD----EVTDEELCRAPFMSNMLMCIYLQSRDKFQEARRHL-----IASVVTYRNKNRNKHTQTKSIPKRTSVAVALEAAALLLEANLVAVSRIALEIAEKAEKAAKTKADERKLQ----TGMPSQLMQWQRRLQAQMALLE-RDDERAVSLASVATSMDPSDGEAWLVLADCEMCGGHVEASTVACAKALTCLRKEADTGSATTDSLKNSDIGPSDKSDRPPLRLYVRLGFLYIQLSRYQEASDVFLQGCSVWQTCSVWLGAGISLLRLNKFEEAEVSLMEANMVNGAHPVVWGYICLLCLCCGDDSRISEAHAALTEAKRLKLQDASLLREIGNAYMAVDLLETAEDVLRRSLACDPSA-------HTRRRLADVLSAQNSLVAAVNVYREVI-ATAADKEEVELAIASCEKHLTALGRNDEIIQLR 512          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A7S2C013_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C013_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.380e-30
Identity = 92/216 (42.59%), Postives = 124/216 (57.41%), Query Frame = 1
Query: 2821 PLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGD-ARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWRAAAAAV*RC 3465
            PL    RLG L L LGR   ++  +L G   W   S+WLGAG+A + L+Q +E+E AL +AN  +N DP VWG +AL  LA+GD  R  +               AALLR+L N++ ++D L  AE + RR+L+ E +A       H RRRLADVLSAQN +AAAV EY+ V+ + + P  E   A   C  LL ALGR  E+ + +A AA +  C
Sbjct:  115 PLRLFVRLGTLMLQLGRNDAARGVFLQGCDTWQTCSMWLGAGIALLRLDQLKESEDALMEANVRNNKDPVVWGFVALACLARGDKVRVDQADKSIVQANRLGLTDAALLRELANSYTALDLLESAEALFRRSLACEPSA-------HTRRRLADVLSAQNSLAAAVNEYKAVIEANEDPQ-EMALAAGECEKLLVALGRSEEVPQLQALAATIQAC 322          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A7S2XZC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZC4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.660e-25
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 1
Query: 2932 WLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAEL 3426
            WLGAGVA + L Q E+AE ALQ+AN LD+ +  +WG L+LL L  G+ R                    LLR+LG +++++DRL  AE + R++L++E      G     RR LADVL+AQN  AAAV +Y+ V+    A   E+QEA S C  LLK LGR+ E+
Sbjct:    1 WLGAGVACLRLNQLEDAEEALQEANLLDHRNATIWGYLSLLSLMHGEDRLEHANKTLEQALRFELDDPVLLRELGVSYMAIDRLEVAESLFRQSLAQE------GGNPRTRRMLADVLAAQNMGAAAVEDYKTVIFDASADEEEKQEAFSNCVALLKKLGRQDEI 159          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: H3HD72_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD72_PHYRM)

HSP 1 Score: 104 bits (260), Expect = 6.300e-19
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 1
Query: 2926 SVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAA----EXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVL-LSTDAPAAERQEALSRCAPLLKALGREAELREWR 3438
            S WLG G+A + LE+WE A+ AL +ANRLD ++P VWG LALL L    + +A    +                ALLR+L NAFV++DRL RAE +LRR+L  + ++ +       R+ LADVL+AQNC   A+ +Y + L ++ D    ER   L +CA LL  LGR  E  E+R
Sbjct:  862 SCWLGVGIATLRLERWERAQMALAEANRLDPSNPDVWGYLALLALTAHTSFSARDEKDAQQFVAQALRHNLSNPALLRELSNAFVAIDRLERAEKLLRRSLVCQDSSLT-------RKTLADVLAAQNCAEDALRQYTQSLDVAEDVQ--ERCTLLEKCAQLLTTLGRPEEAHEYR 1028          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A812Z0H8_SYMMI (Cfap70 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z0H8_SYMMI)

HSP 1 Score: 97.8 bits (242), Expect = 8.370e-19
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 1
Query: 2821 PLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLL 3399
            PLA +   G   L+ GR  ++    L G R +   +++   G+  + +++  +AE ALQ+AN +DN +P VW  LA+L L  GD R  E               +A+LR++  AF+SVD+L  AE+++RR+++ + A G+    +H RR L D+L+ QN    A+ EY+ V+   DA    R  A  +C+ LL
Sbjct:   57 PLADYVEAGKALLSTGRFEDALDVMLLGCRVYPSSTLFNLVGICCLRVDRMVDAEDALQEANLIDNRNPEVWAYLAILCLHTGDHRMEEAERSCEQALRLGLNNSAILREIAMAFISVDKLRTAEELVRRSMASDLADGAPKPNSHTRRLLGDILAGQNQAVEAIEEYQSVIGDEDADLETRLLAGEKCSDLL 249          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: A0A482SRD8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRD8_9ARCH)

HSP 1 Score: 92.4 bits (228), Expect = 1.130e-16
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 2926 SVWLGAGVAAMELEQWEEAEAALQQANRLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXXAALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAEL 3426
            SV L  GV  + L +  EAE AL +AN LDN +  VW  L++L +  G  R  E                ++LR+L  AF+S+D+L  AED+LRR+++ +       A  H R+ LADVL+ QN  A AV EY+ VLL  DA    ++ A  +C  LL +LGR+ EL
Sbjct:   99 SVCLQLGVNYLRLNKESEAEKALMEANLLDNRNSEVWAMLSVLCVRLGPRRVYEAEQCLFQALRLGLSAPSVLRELALAFMSIDKLQVAEDLLRRSIACDLQTRRI-AHPHSRKLLADVLAGQNLAAKAVEEYKAVLLDEDADPTTKRAAADKCLALLASLGRDEEL 264          
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Match: F0YI33_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI33_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 5.970e-14
Identity = 197/714 (27.59%), Postives = 284/714 (39.78%), Query Frame = 1
Query: 1327 TVLRVAPPRELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAXXXXXXXXXXXXXXXXXXXXXRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLSTPTPPPDQLACALYSDLVQRANAVLLLRLRD---IEAGLLPQYLSTDATAAVAQRARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAXXXXXXXXXXXDNTPASADLDEARALLTQAWLDMAACCSRRGDLDAAAQALTETLRCAPGGAAHPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDAYAERCPADMCALLSIVRDRQHQPCAARAALRRAXXXXXXXXXXXXXXXXXXXXXXXPRRTAVALLLGLCEYLLQRGLRRGAAAXXXXXXXXXXXXXXKAAERGLPPAAGTAQRATLLRLDSALRAAAAANDVXXXXXXVESAQLAAELEPRSAAAWGALAAALRAARYPVEEA-EALAAALACCS--SAQERGPLAQHARLGALNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQAN--RLDNADPAVWGTLALLLLAQGDARAAEXXXXXXXXXXXXXXX--AALLRKLGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNCVAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWR 3438
            ++L   PP+   + K P +V+ + + EIDA +  +L  Y  L                         R+L   L      H F+  L PRIQRVVRKR        S       +L    Y+ L++  N +L +R  D    +A   P+  S +    + QR     +LA DAEA+E W  A   H+  +     + +            +T     L +A+  L+       A C     LD A  AL E+L        H   ++ ++    + LE GR+  A     +AL   L  PS       T   A    A   ALL IV D Q     A  A  RA                           AVA      EYL +  L   +A                A  R    A G  Q  ++L     +  A +   V      V+ A LA    P SA A+  L  A    +  +EEA +    A+  C   S  +  PLA   +     L   +   ++ A++  A EW   S+WLGAG A++ L +  EA+  L+ A      NA P  W  LALL   + D   AE                 A+LLR+LGNA+ +++R A AE +LRRA++ E      GA AH RRRLADVL+AQ+    A+  Y+ + L+T   + ER +  +    LL A+GR   ++E R
Sbjct: 1289 SMLDCVPPKRSLKKKTPRNVDGELEQEIDATLSKILQTYEVL----------QKKREFIGCDSEQRQRRLKKLLDEDSTSHGFRLNLTPRIQRVVRKRYPVQPENESRE----QELIGEAYTHLMEVTNTLLTVRGCDGVHQDAAKNPRLPSAEDV--LGQRL----VLAADAEANELWCVAADEHKAMLSVATLSASDQNIMAETWFEYSTFLLRALGDAKGRLS-----FCADC-----LDEARHALDESLALQLSDINH---ISALRLRGCIFLEQGRLVEAR----NALQAVLKAPS-------TSKGATPSVALDAALLCIVLDVQEDGIGAHDAAVRAATAVADNIPKIYR--------------AVAAFQDAAEYLQRWSLVSTSARALAIVRRALLA----ANARAHLSAKGHIQMPSILVAQRCVLDAKSVLFVEPARA-VDLASLATSTAP-SAKAYETLGDA-HFNQGRIEEAIDPYKEAIRLCHQRSPVDIVPLALRIKHAKSLLQTRQYDAARDAFIVAANEWQTSSLWLGAGAASLRLGRINEADNFLRLATVRSARNAPPHAW--LALLHATEADPCDAETHASQVLDLAMTLGINDASLLRELGNAYFALERYALAEALLRRAVAAEP---KKGANAHTRRRLADVLAAQDATEDAIDMYK-IALATSEDSNERDDISATLQGLLAAVGRSTGVKENR 1931          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YIA9_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LNE3_ECTSI5.860e-5931.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT48_9PHAE2.390e-4929.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GGG8_9STRA1.960e-3030.37Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C013_9STRA5.380e-3042.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XZC4_9STRA1.660e-2543.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3HD72_PHYRM6.300e-1942.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A812Z0H8_SYMMI8.370e-1933.68Cfap70 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A482SRD8_9ARCH1.130e-1639.52Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0YI33_AURAN5.970e-1427.59Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:543916..551097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351274|estExt_Genemark1.C_Ctg_850064
Max annot lvl2759|Eukaryota
EggNOG OGs2CMXF@1|root,2QSJ2@2759|Eukaryota
Evalue6.86e-60
Seed ortholog2880.D8LNE3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_004170.1
TranscriptId351596
TrackFilteredModels1
ProteinId351274
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351274gene_12212Tribonema minus UTEX_B_3156 geneContig_85 543916..551097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351274Trimin1|351274|estExt_Genemark1.C_Ctg_850064Tribonema minus UTEX_B_3156 polypeptideContig_85 543916..550912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12212_1exon_12212_1Tribonema minus UTEX_B_3156 exonContig_85 543916..544486 +
exon_12212_2exon_12212_2Tribonema minus UTEX_B_3156 exonContig_85 545723..546722 +
exon_12212_3exon_12212_3Tribonema minus UTEX_B_3156 exonContig_85 547499..547810 +
exon_12212_4exon_12212_4Tribonema minus UTEX_B_3156 exonContig_85 548854..550078 +
exon_12212_5exon_12212_5Tribonema minus UTEX_B_3156 exonContig_85 550562..551097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12212CDS_12212Tribonema minus UTEX_B_3156 CDSContig_85 543916..544486 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12212UTR3_12212Tribonema minus UTEX_B_3156 three_prime_UTRContig_85 550913..551097 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12212 ID=mRNA_12212|Name=jgi.p|Trimin1|351274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3644bp|location=Sequence derived from alignment at Contig_85:543916..551097+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCAGCAAGCAGTCATCTGAGCATAGCTGTGCACGGCATCAGATT
TGAGCACACAGATGCAGTGTCACCAGCCGCTGTGGCGGGCAGCAGTATCA
CGCTCAAGTGTGCTGTCGAGGGAATTGCTGCTTCAGAGCTGTTCAGCCAG
CTTGCTCCTGCTGAAATCACTGTTACTTTGGAGGAGGACGCTGGCGAGGC
GGGGCTTCTGCAGGGCGCGGTGCATCATTCGGTGCACACCACTCCCTTTG
AGCCCAGTGAGGAAACATTGGGCAGGATTGCTGCAGCTACGTACACCATA
CAGGCCTGGCTGGCGCAGGAGCTTCTGGGTGCAGCCCATGTTCAATTATC
GGACGTCCTGGCAGGGGAGACGGAGGCGCACATAGAGGTGCCGCTCCTGC
TGCATGGAAGCAACGACCCCACAGGATTCCTGAAGGTGGTGCTGTCGTGC
GATGAGGCCACTGCGGACTACTGCATAGGATCCTCCAGGTTGACTCTCAG
GGAGCTGCGCATTGCTGGACTGCCGGCGGCGTGGCGGCTAGCGCATGGCG
AGTTGCAAGGTCTGGAAGGAGATGCGTGGCAAGCCAAAGTACAGGACCTG
CTGGCCCAGCCCGCCAACCAAACATTCACCTACACCCTGGACTGGACAGC
AGCAGGTCCCGCTTTCGACAACAACCACAACACCACCGCCACCAGCGCTG
CCGACCCTCAACAACCCGATGCTGCTAGCACTGGCAGCAGCGCTCAGCCA
CAACTTCAACTTCAACAGCCACCCGCCCTGCCGGGGGCGCTGGCGCGCTT
CCACACCGCCTCCGGCGCGCTGCAGTGCCGCGGCGGCAGCAGCAGCAGCA
GCAGCGGCAGCAGCGGCAGCGGCAGCGGCGACTGGACGATCGCCTTCGAC
GCGCCGCCGGGCGCCCTGTTCCTGCACCGCAGCAGCGTGCACGCGCTGCG
CGCCGCCGCGCTCGCCGGCGCGCGCCTCTGCGCCACCGTCGTGCGTGCCC
GAGCGGTGCCGCTCGTCGACCCCAAGGCCAAGAAGCCGCCGCCCCCCGCC
AAGGGGAAGGGGGCGGAGCCGGCCCCCCCGCCTGAGGCGCCGTGGACGCT
GCGTACATACCTACCCCTGGCGCCGCTGGCGGAGCGGCCCGACCTGCTGA
ATGCGGAGCTGCGGGGGGCGCTGGAGTACGGCGGAGGGGATTCCCAGTCA
GATTCAGAGTCGGACGCGGCGCGCGCAGCACTGCTCAGCGAGAGCGGCAC
GGCGCTGCGCCTCGGGGCGCGTCTGTCGCGCGCGCTGGTGACGCTGCCGC
CGGTTATGGCAGTTACGCCCGGCGAAACGGTGCTGCGCGTGGCCCCCCCG
CGCGAGCTGCGGCGCCCCAAACCTCCCGTTGATGTTGAACAGGACTGGCA
GGATGAGATTGACGCGTTCGTACGCGCGGTGCTGGTGGAGTATACCAAGC
TGTTCGGGGCGGCAGCGGCGGCAGGGGGGGCGGGCGGTGGTGGCGGCGGT
GCGGAGGTGTCGGCGGAGGACAGGCGGCGGCAGCTGTTCTACGCGCTAAG
CGCTGGCGGCATGTATCACAGGTTCAAGGAGGCGCTCAAGCCGCGCATCC
AGCGCGTCGTGCGCAAGCGCCTGAGCACTGCCGCAGCCCCCCTGAGCACC
CCCACACCCCCCCCGGACCAGCTGGCCTGCGCCCTCTACTCCGACCTGGT
GCAGCGCGCCAATGCGGTGCTGCTGCTGCGGCTGCGCGACATCGAGGCGG
GGCTGCTGCCGCAGTACCTGAGCACTGACGCGACGGCGGCGGTGGCGCAG
CGCGCGCGTGCGCTGGGGCTGCTGGCCGAGGACGCCGAGGCCAGTGAGCA
GTGGGAGAGGGCAGTGCTCAGGCATCAGGACCGAATCGACGCCATCGAAA
CCGCCATCGCCGCCCTGCCCCCCACCCCCACCACCCCCTCCACCGACAAC
ACCCCCGCCAGTGCCGACCTAGACGAAGCACGCGCCCTCCTCACGCAAGC
GTGGCTCGACATGGCAGCGTGCTGCTCACGCCGCGGCGATCTCGACGCCG
CAGCGCAAGCACTCACCGAGACGCTGCGCTGCGCGCCCGGTGGCGCTGCG
CACCCGCTCAACCTTAACTACGTGCAGTTCTACGCCGCAGTCGCGCTGGA
AATGGGCCGCGTTGACTCCGCGGAAGCAGTGCTGGAGGATGCGCTTGCGA
CGTGCCTGCCGCCGCCGTCAGAGTGGGGCGACGGCTACGACACCGACGCC
TATGCGGAGCGCTGCCCTGCGGACATGTGCGCGCTGCTCAGCATCGTGCG
CGACAGGCAGCACCAGCCGTGCGCGGCGCGCGCCGCGCTGCGCCGCGCCG
TCGCCGCGGCGCTCCGCCAGAGCGGCGGCGGCAGCGCGCAGCAGCAGCAG
CAGCAGCAGCAGGAGCGGCCGCGGCGCACCGCCGTCGCGCTCCTGCTGGG
CCTGTGCGAGTACCTGCTGCAGCGGGGGCTGCGGCGCGGCGCGGCGGCAG
CGCTGGCGGCGGCGCGCGCTGCGGAGGGCACCGCCGCCGCCAAGGCCGCG
GAGAGGGGCCTGCCGCCCGCCGCCGGCACGGCGCAGCGCGCGACGTTGCT
GCGCCTCGACAGTGCGCTGCGCGCTGCCGCCGCCGCCAACGATGTCGCCG
CCGCCGCCGCCGCAGTGGAGTCCGCGCAGCTGGCGGCGGAGCTGGAGCCG
CGCAGCGCGGCGGCGTGGGGCGCGCTGGCGGCGGCGCTGCGCGCGGCGCG
CTACCCCGTGGAGGAGGCGGAGGCGCTGGCGGCGGCGCTGGCCTGCTGCA
GCAGCGCTCAGGAGAGGGGGCCCCTCGCGCAGCACGCGCGGCTTGGCGCT
CTGAACCTCGCGCTGGGACGCCCTGCGGAGAGCAAGGCGGCGTGGCTCGG
GGGCGCGCGCGAGTGGCACGTGCCCAGCGTCTGGCTGGGTGCGGGGGTGG
CGGCGATGGAGCTGGAGCAGTGGGAGGAGGCAGAGGCGGCGCTGCAGCAG
GCCAATCGGCTCGATAACGCGGACCCCGCGGTGTGGGGGACGCTGGCGCT
GCTGCTGCTGGCGCAGGGGGACGCGCGCGCTGCAGAGGCGGAGCGCGCGC
TGGACCAGGCGCTGCGGCTGGGCCTCGCCGACGCCGCGCTGCTGCGCAAG
CTCGGCAACGCCTTTGTCTCCGTAGACCGCCTCGCGCGCGCAGAGGACAT
GCTGCGTCGCGCACTGTCCCGCGAGACCGCCGCCGGCAGCAGCGGCGCCG
GCGCGCATGTGCGGCGCCGCCTGGCCGACGTCTTGTCTGCGCAGAACTGC
GTCGCGGCGGCGGTGGGCGAGTACAGGGAGGTGTTGCTGAGCACTGACGC
GCCAGCGGCGGAGCGGCAGGAGGCGCTGAGCCGCTGCGCGCCGCTGCTCA
AGGCGCTCGGGCGCGAGGCGGAGCTGAGGGAGTGGCGCGCGGCGGCGGCG
GCAGTGTGACGCTGCGGTTCAAGCTACATGTACCTCAAGTGTACCTCAAA
GCTGTACTTCAAGCTGTACTTGAAGCTGCAGACTGGGAGGCTGTAGGGGG
CCAGGAGCGGCGTTTGGGGGGGATGCAGCGTGAGCGCCAGTGCGGGATGG
TGGTTTGGCAGGAGAGGAGAAACGCGCACTGCAGTTAATGCCGA
back to top

protein sequence of jgi.p|Trimin1|351274

>Trimin1|351274|estExt_Genemark1.C_Ctg_850064 ID=Trimin1|351274|estExt_Genemark1.C_Ctg_850064|Name=jgi.p|Trimin1|351274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1153bp
MASASSHLSIAVHGIRFEHTDAVSPAAVAGSSITLKCAVEGIAASELFSQ
LAPAEITVTLEEDAGEAGLLQGAVHHSVHTTPFEPSEETLGRIAAATYTI
QAWLAQELLGAAHVQLSDVLAGETEAHIEVPLLLHGSNDPTGFLKVVLSC
DEATADYCIGSSRLTLRELRIAGLPAAWRLAHGELQGLEGDAWQAKVQDL
LAQPANQTFTYTLDWTAAGPAFDNNHNTTATSAADPQQPDAASTGSSAQP
QLQLQQPPALPGALARFHTASGALQCRGGSSSSSSGSSGSGSGDWTIAFD
APPGALFLHRSSVHALRAAALAGARLCATVVRARAVPLVDPKAKKPPPPA
KGKGAEPAPPPEAPWTLRTYLPLAPLAERPDLLNAELRGALEYGGGDSQS
DSESDAARAALLSESGTALRLGARLSRALVTLPPVMAVTPGETVLRVAPP
RELRRPKPPVDVEQDWQDEIDAFVRAVLVEYTKLFGAAAAAGGAGGGGGG
AEVSAEDRRRQLFYALSAGGMYHRFKEALKPRIQRVVRKRLSTAAAPLST
PTPPPDQLACALYSDLVQRANAVLLLRLRDIEAGLLPQYLSTDATAAVAQ
RARALGLLAEDAEASEQWERAVLRHQDRIDAIETAIAALPPTPTTPSTDN
TPASADLDEARALLTQAWLDMAACCSRRGDLDAAAQALTETLRCAPGGAA
HPLNLNYVQFYAAVALEMGRVDSAEAVLEDALATCLPPPSEWGDGYDTDA
YAERCPADMCALLSIVRDRQHQPCAARAALRRAVAAALRQSGGGSAQQQQ
QQQQERPRRTAVALLLGLCEYLLQRGLRRGAAAALAAARAAEGTAAAKAA
ERGLPPAAGTAQRATLLRLDSALRAAAAANDVAAAAAAVESAQLAAELEP
RSAAAWGALAAALRAARYPVEEAEALAAALACCSSAQERGPLAQHARLGA
LNLALGRPAESKAAWLGGAREWHVPSVWLGAGVAAMELEQWEEAEAALQQ
ANRLDNADPAVWGTLALLLLAQGDARAAEAERALDQALRLGLADAALLRK
LGNAFVSVDRLARAEDMLRRALSRETAAGSSGAGAHVRRRLADVLSAQNC
VAAAVGEYREVLLSTDAPAAERQEALSRCAPLLKALGREAELREWRAAAA
AV*
back to top

mRNA from alignment at Contig_85:543916..551097+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12212 ID=mRNA_12212|Name=jgi.p|Trimin1|351274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7182bp|location=Sequence derived from alignment at Contig_85:543916..551097+ (Tribonema minus UTEX_B_3156 )
ATGGCCTCAGCAAGCAGTCATCTGAGCATAGCTGTGCACGGCATCAGATT TGAGCACACAGATGCAGTGTCACCAGCCGCTGTGGCGGGCAGCAGTATCA CGCTCAAGTGTGCTGTCGAGGGAATTGCTGCTTCAGAGCTGTTCAGCCAG CTTGCTCCTGCTGAAATCACTGTTACTTTGGAGGAGGACGCTGGCGAGGC GGGGCTTCTGCAGGGCGCGGTGCATCATTCGGTGCACACCACTCCCTTTG AGCCCAGTGAGGAAACATTGGGCAGGATTGCTGCAGCTACGTACACCATA CAGGCCTGGCTGGCGCAGGAGCTTCTGGGTGCAGCCCATGTTCAATTATC GGACGTCCTGGCAGGGGAGACGGAGGCGCACATAGAGGTGCCGCTCCTGC TGCATGGAAGCAACGACCCCACAGGATTCCTGAAGGTGGTGCTGTCGTGC GATGAGGCCACTGCGGACTACTGCATAGGATCCTCCAGGTTGACTCTCAG GGAGCTGCGCATTGCTGGACTGCCGGCGGCGTGGCGGCTAGCGCATGGCG AGTTGCAAGGTCTGGAAGGAGGTACGTACCTATGTACCTGTTGACAGTGT CGCTCACCCCGTGCCATGGCATGAGTAAGTGGCCAGCGTGATGGTGGAGC AGAGGAAAATGATAGCTGGCTCTGCGAAGATTCGCCGTGGATTATGTGAG TGAGCATGGCCCACCGATCGTAGGCCTCTAGGTGACAAGGTGTGCTCATC GTCAACATTGAATGCCTTCCACTGATAACTGTGGTCGCCGCTGCTGCGGC AGTTGGCCACGAGTCAAACAGTGCCTCCATATCCACAGTAGTCATTGCTG TGTGTGCTGTCACTGCGGCTCAGTGCGCGCCATAGCATAGGTAATCAGCC AAAGTGATGGTGGAGCAGAGGAAAATGCAAGCTTGCTTTGCGGAGATTTG CCATAGTTTGCTTTGCGAAGATTTGCCATGGGTCATATGAGTGAGCATAG CCTACACATTGACGGCAGCAGCTCGCACATGCAGCTGACCCTGCTGCCGT GTCATGTCATGTCATTCTACGCATGGAGCCACCAAGAAGTTTGTGCATGC AGACTAGTTGTGTATGCGAAGATACCGCCATATCTGTGCTGTTGACGCTG AATACTGCATGCAGTGCAGCAATTAATAAGGGATGCAAAGACAGGACTCC TTCTTGTTCAACCAGTCGCTTTGTCTATGATGTCAACACAACAGGACATG TCACTCACTACTTAGTTGGGCCACGTTCGCAAGATCAGCAGTCCCACAGT GCAAAATCCACTGCACTTTGCTTCAACATTTTCCCAGCAGCTCGAAAATG CTCAATGCACTGCGCTTTGCTTCGGCATTGCAAGCACCCCTTCAACAAAT GTGCACCTGCTCAGCAGCAAGCACTTGCATCTGGTGTGGGCGTGCTTGAA GTTGAAGTACAGCAGCCCACAAAGCAAGTTTGAAACGCTAAAGGCTACTG CCATGTGTACATTTGCGCTCTACTCCGCGAGCACTTGCTGGCTTTGCTGC GAAAACGGCCAGCGAACGCAGGTGATGCAGTATGTTACTTCAAGGCGAAA TAGTGTCCTTCAAGGCAGCACATGCAGCAGTGCGTGTGGCCGTCAGAGGT CGCCTGCACAGCTGAAGCGAGACAATTCCCTGAATGCCACAACAGGTCAG GCTGGGGTGACTGTCTCGGCTACAAATTGAGGATAGCCCGATGACAACAG CACATTAGTTTGAGCTTCTCATCCATCCTACCCTTGCGCCTCTGTGAACC CGTGCAGATGCGTGGCAAGCCAAAGTACAGGACCTGCTGGCCCAGCCCGC CAACCAAACATTCACCTACACCCTGGACTGGACAGCAGCAGGTCCCGCTT TCGACAACAACCACAACACCACCGCCACCAGCGCTGCCGACCCTCAACAA CCCGATGCTGCTAGCACTGGCAGCAGCGCTCAGCCACAACTTCAACTTCA ACAGCCACCCGCCCTGCCGGGGGCGCTGGCGCGCTTCCACACCGCCTCCG GCGCGCTGCAGTGCCGCGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGC GGCAGCGGCAGCGGCGACTGGACGATCGCCTTCGACGCGCCGCCGGGCGC CCTGTTCCTGCACCGCAGCAGCGTGCACGCGCTGCGCGCCGCCGCGCTCG CCGGCGCGCGCCTCTGCGCCACCGTCGTGCGTGCCCGAGCGGTGCCGCTC GTCGACCCCAAGGCCAAGAAGCCGCCGCCCCCCGCCAAGGGGAAGGGGGC GGAGCCGGCCCCCCCGCCTGAGGCGCCGTGGACGCTGCGTACATACCTAC CCCTGGCGCCGCTGGCGGAGCGGCCCGACCTGCTGAATGCGGAGCTGCGG GGGGCGCTGGAGTACGGCGGAGGGGATTCCCAGTCAGATTCAGAGTCGGA CGCGGCGCGCGCAGCACTGCTCAGCGAGAGCGGCACGGCGCTGCGCCTCG GGGCGCGTCTGTCGCGCGCGCTGGTGACGCTGCCGCCGGTTATGGCAGTT ACGCCCGGCGAAACGGTGCTGCGCGTGGCCCCCCCGCGCGAGCTGCGGCG CCCCAAACCTCCCGTTGATGTTGAACAGGACTGGCAGGATGAGATTGACG CGTTCGTACGCGCGGTGCTGGTGGAGTATACCAAGCTGTTCGGGGCGGCA GCGGCGGCAGGGGGGGCGGGCGGTGGTGGCGGCGGTGCGGAGGTGTCGGC GGAGGACAGGCGGCGGCAGCTGTTCTACGCGCTAAGCGCTGGCGGCATGT ATCACAGGTATGTAGGTATCACTGTGATGATTCCAACTGATGAATTGTTG CAGGGATAATCATGTGGTAGAACGACAAGTACATGGGGTAAATGGAAGGA TGCCAAATGGACGTGGGATCGATGAAGGAGTGCTGGTGTGAAAGCCCCCC CCTTGCTTTAAGCAAGTATTGTGACTTTCTTGTACTCTGAAGGCCTCTGA AGCATCATGCCGCTGAATCTATGTACTTGACACACTTGGATGGTCCACAG CTCATGTTGCTGCCAATCCTGTCTGTTCGCCTTACTTTTTCCTTAGGGTT AGCTGTACCTGATTGCTGACACACTTGTGAGACAAGTACCTGCAGTTTGG CACCAGAATACATGGGCACCCCAAAGAAGAATTCATCATAATCTTGACAT CAGACGGCTGCAAGAATGTAGTTGCATGTGTGGTACTTGAAGATTTCTCA AACACGCGTACTTAAGTATGTATACTTCTATATATATGCTTTCGAATGGG CACAATCATATACAGCAGTTTGAAAACCTGGCTGGCATACGCGCTTGTCG GTGTGGCGGCAACCCTAACCCTAACCCTAACCCTAATCCTAACCCTAACC CTAACCCTACAGCCGCTGGCGCACTCCCTATTGTCATAGCGCTGCAATCT GACAGCGCCGCAACCATGAGGGCGCTCAAGCTGTGCACGTTGCGGCTGTC TCAATCTGCCCTGAGCCACTGTTACCCACCCCCAACACATTGAATTCACC GCACGCGCGCCGCCCCCCTTTAACTGCGCGCAGGTTCAAGGAGGCGCTCA AGCCGCGCATCCAGCGCGTCGTGCGCAAGCGCCTGAGCACTGCCGCAGCC CCCCTGAGCACCCCCACACCCCCCCCGGACCAGCTGGCCTGCGCCCTCTA CTCCGACCTGGTGCAGCGCGCCAATGCGGTGCTGCTGCTGCGGCTGCGCG ACATCGAGGCGGGGCTGCTGCCGCAGTACCTGAGCACTGACGCGACGGCG GCGGTGGCGCAGCGCGCGCGTGCGCTGGGGCTGCTGGCCGAGGACGCCGA GGCCAGTGAGCAGTGGGAGAGGGCAGTGCTCAGGCATCAGGACCGGTACG TATGTATATGTCCGTATGTTTCACAGTACTTGAGGCCAGTGCTCAGTGGG AGAGGGCAGTGCTCAGGCATCAGGACCGGTACGTATGTATGCATGTGCTC GAAAGTGTTAAGGGTCAGTGCTCAGTGGGTGAGGGCAGTGCTCAGGCAGC AGGGTCGGTACATACGTATATACTTGTTTGGTAACAGTGCTCAGTGGGTG AGGGCAGTGCTCCGGCACCATGATCGATGTGTATGTAGAAGCATAGAGTT TGGAGTACTGAAGGCCTGTGCTCGGTGGGAGAAGGCAGTGCTCAAGCATC AGGATACTGGTACGTATGTGTACGCTTGAGTGTGTTTGAGGGCAGTGCTC TGTGGGAGAGGGCAGTGCTCAGTCACCAGGACCGTTATGTATGCATAGAG TTTGGAGTACTGGAGGCCTGTGGTCGGTGGGAGAATGTGCTTGAGGGCAG TTCTTAGTGGGAGAGGGCAGTGCTCAAGCATGAGGATGTGAATGTATACA TAAATGCGCTGCAGACTGCTGAGTGGTGCTTAGGGTAACCTCAAACGGGA CCCGCAAGCGTGACTCTCGATCTCAAGTCTGGCCTCAAAATGCCTCTTGT GCCACAGTTTGGCTATGCTATGTATGCACAAAAGGCTGCAGAATTTGAGC TATCCTTTAGAAAAGACTGAGTGTCCTGCTGGTACATGACAGGCTTCAGT AACTCTAAGGCATGTTTAGCTGGCAGCATCAGCTGCTGGTGCTGCTGACT ACACCAGCGACTGCAGCGGTTACAGAAGGATATGCGGCTCTGTTGAGCAT CGCCGAATGAGTTCATATGTTGTTACCAAGGTGTGACATGTGCACTTCAG CAGTGGTTAGCGCGAAATGTGTCGGCTCACGTCTACTTTTTTTTTTAACA CTCCTCACTGTACTCCTCACTGTCCCTATGCCCTCTCTCAGTTTTGTGCG ACACATGTGTATATTCTCTCATGTTGCACAATTCAAGGCAGACGCTCATG GTTCCCCCCCCCCCCCCGTACCCGCCCCCAACGTCCAGAATCGACGCCAT CGAAACCGCCATCGCCGCCCTGCCCCCCACCCCCACCACCCCCTCCACCG ACAACACCCCCGCCAGTGCCGACCTAGACGAAGCACGCGCCCTCCTCACG CAAGCGTGGCTCGACATGGCAGCGTGCTGCTCACGCCGCGGCGATCTCGA CGCCGCAGCGCAAGCACTCACCGAGACGCTGCGCTGCGCGCCCGGTGGCG CTGCGCACCCGCTCAACCTTAACTACGTGCAGTTCTACGCCGCAGTCGCG CTGGAAATGGGCCGCGTTGACTCCGCGGAAGCAGTGCTGGAGGATGCGCT TGCGACGTGCCTGCCGCCGCCGTCAGAGTGGGGCGACGGCTACGACACCG ACGCCTATGCGGAGCGCTGCCCTGCGGACATGTGCGCGCTGCTCAGCATC GTGCGCGACAGGCAGCACCAGCCGTGCGCGGCGCGCGCCGCGCTGCGCCG CGCCGTCGCCGCGGCGCTCCGCCAGAGCGGCGGCGGCAGCGCGCAGCAGC AGCAGCAGCAGCAGCAGGAGCGGCCGCGGCGCACCGCCGTCGCGCTCCTG CTGGGCCTGTGCGAGTACCTGCTGCAGCGGGGGCTGCGGCGCGGCGCGGC GGCAGCGCTGGCGGCGGCGCGCGCTGCGGAGGGCACCGCCGCCGCCAAGG CCGCGGAGAGGGGCCTGCCGCCCGCCGCCGGCACGGCGCAGCGCGCGACG TTGCTGCGCCTCGACAGTGCGCTGCGCGCTGCCGCCGCCGCCAACGATGT CGCCGCCGCCGCCGCCGCAGTGGAGTCCGCGCAGCTGGCGGCGGAGCTGG AGCCGCGCAGCGCGGCGGCGTGGGGCGCGCTGGCGGCGGCGCTGCGCGCG GCGCGCTACCCCGTGGAGGAGGCGGAGGCGCTGGCGGCGGCGCTGGCCTG CTGCAGCAGCGCTCAGGAGAGGGGGCCCCTCGCGCAGCACGCGCGGCTTG GCGCTCTGAACCTCGCGCTGGGACGCCCTGCGGAGAGCAAGGCGGCGTGG CTCGGGGGCGCGCGCGAGTGGCACGTGCCCAGCGTCTGGCTGGGTGCGGG GGTGGCGGCGATGGAGCTGGAGCAGTGGGAGGAGGCAGAGGCGGCGCTGC AGCAGGCCAATCGGCTCGATAACGCGGACCCCGCGGTGTGGGGGACGCTG GCGCTGCTGCTGCTGGCGCAGGGGGACGCGCGCGCTGCAGAGGCGGAGCG CGCGCTGGACCAGGTGAGAAGCCCAGGGCTGAGCCTCGCCCTGCTTGAGT TTCGTAAGGAGCAAGGGCTATACCTCGTCCTTAGTGTAACCCTGAGTAGC CCTGAGCGGCGAAGGCCGGGGCGGAGCGCGCATTGGAGCAAATCAATATA GCCATGTTTCGCCTCTGCTCCAGCTCTGCCGCTAGCCCTGAGCGGCGCAC AGGCGGAGGCACGTTCGTTAGACAGGACGCCTAACCCTGATCCTATTAAT AACACCAAACCCTACCCGTAATCCTACTCAAGTAGATGTTTGTTCTGCAT GTATGTCGTGCAGTGGATGCATGATGCGATGCTGCCTGAGTGCGTCGTGT CTGAATTTGCAGTGTATCTGAGTACTGTTCAGGCTCCTTTTAAAGCGCTG CGATTCGCAGGCATCTTGCCAATCACAACGCTCACACCCATACACCCTCC TCTTAATCTCACTCTCCTCACTACTCCTCATCTCCACCACCCACAGGCGC TGCGGCTGGGCCTCGCCGACGCCGCGCTGCTGCGCAAGCTCGGCAACGCC TTTGTCTCCGTAGACCGCCTCGCGCGCGCAGAGGACATGCTGCGTCGCGC ACTGTCCCGCGAGACCGCCGCCGGCAGCAGCGGCGCCGGCGCGCATGTGC GGCGCCGCCTGGCCGACGTCTTGTCTGCGCAGAACTGCGTCGCGGCGGCG GTGGGCGAGTACAGGGAGGTGTTGCTGAGCACTGACGCGCCAGCGGCGGA GCGGCAGGAGGCGCTGAGCCGCTGCGCGCCGCTGCTCAAGGCGCTCGGGC GCGAGGCGGAGCTGAGGGAGTGGCGCGCGGCGGCGGCGGCAGTGTGACGC TGCGGTTCAAGCTACATGTACCTCAAGTGTACCTCAAAGCTGTACTTCAA GCTGTACTTGAAGCTGCAGACTGGGAGGCTGTAGGGGGCCAGGAGCGGCG TTTGGGGGGGATGCAGCGTGAGCGCCAGTGCGGGATGGTGGTTTGGCAGG AGAGGAGAAACGCGCACTGCAGTTAATGCCGA
back to top

Coding sequence (CDS) from alignment at Contig_85:543916..551097+

>mRNA_12212 ID=mRNA_12212|Name=jgi.p|Trimin1|351274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=3459bp|location=Sequence derived from alignment at Contig_85:543916..551097+ (Tribonema minus UTEX_B_3156 )
ATGGCCTCAGCAAGCAGTCATCTGAGCATAGCTGTGCACGGCATCAGATT
TGAGCACACAGATGCAGTGTCACCAGCCGCTGTGGCGGGCAGCAGTATCA
CGCTCAAGTGTGCTGTCGAGGGAATTGCTGCTTCAGAGCTGTTCAGCCAG
CTTGCTCCTGCTGAAATCACTGTTACTTTGGAGGAGGACGCTGGCGAGGC
GGGGCTTCTGCAGGGCGCGGTGCATCATTCGGTGCACACCACTCCCTTTG
AGCCCAGTGAGGAAACATTGGGCAGGATTGCTGCAGCTACGTACACCATA
CAGGCCTGGCTGGCGCAGGAGCTTCTGGGTGCAGCCCATGTTCAATTATC
GGACGTCCTGGCAGGGGAGACGGAGGCGCACATAGAGGTGCCGCTCCTGC
TGCATGGAAGCAACGACCCCACAGGATTCCTGAAGGTGGTGCTGTCGTGC
GATGAGGCCACTGCGGACTACTGCATAGGATCCTCCAGGTTGACTCTCAG
GGAGCTGCGCATTGCTGGACTGCCGGCGGCGTGGCGGCTAGCGCATGGCG
AGTTGCAAGGTCTGGAAGGAGATGCGTGGCAAGCCAAAGTACAGGACCTG
CTGGCCCAGCCCGCCAACCAAACATTCACCTACACCCTGGACTGGACAGC
AGCAGGTCCCGCTTTCGACAACAACCACAACACCACCGCCACCAGCGCTG
CCGACCCTCAACAACCCGATGCTGCTAGCACTGGCAGCAGCGCTCAGCCA
CAACTTCAACTTCAACAGCCACCCGCCCTGCCGGGGGCGCTGGCGCGCTT
CCACACCGCCTCCGGCGCGCTGCAGTGCCGCGGCGGCAGCAGCAGCAGCA
GCAGCGGCAGCAGCGGCAGCGGCAGCGGCGACTGGACGATCGCCTTCGAC
GCGCCGCCGGGCGCCCTGTTCCTGCACCGCAGCAGCGTGCACGCGCTGCG
CGCCGCCGCGCTCGCCGGCGCGCGCCTCTGCGCCACCGTCGTGCGTGCCC
GAGCGGTGCCGCTCGTCGACCCCAAGGCCAAGAAGCCGCCGCCCCCCGCC
AAGGGGAAGGGGGCGGAGCCGGCCCCCCCGCCTGAGGCGCCGTGGACGCT
GCGTACATACCTACCCCTGGCGCCGCTGGCGGAGCGGCCCGACCTGCTGA
ATGCGGAGCTGCGGGGGGCGCTGGAGTACGGCGGAGGGGATTCCCAGTCA
GATTCAGAGTCGGACGCGGCGCGCGCAGCACTGCTCAGCGAGAGCGGCAC
GGCGCTGCGCCTCGGGGCGCGTCTGTCGCGCGCGCTGGTGACGCTGCCGC
CGGTTATGGCAGTTACGCCCGGCGAAACGGTGCTGCGCGTGGCCCCCCCG
CGCGAGCTGCGGCGCCCCAAACCTCCCGTTGATGTTGAACAGGACTGGCA
GGATGAGATTGACGCGTTCGTACGCGCGGTGCTGGTGGAGTATACCAAGC
TGTTCGGGGCGGCAGCGGCGGCAGGGGGGGCGGGCGGTGGTGGCGGCGGT
GCGGAGGTGTCGGCGGAGGACAGGCGGCGGCAGCTGTTCTACGCGCTAAG
CGCTGGCGGCATGTATCACAGGTTCAAGGAGGCGCTCAAGCCGCGCATCC
AGCGCGTCGTGCGCAAGCGCCTGAGCACTGCCGCAGCCCCCCTGAGCACC
CCCACACCCCCCCCGGACCAGCTGGCCTGCGCCCTCTACTCCGACCTGGT
GCAGCGCGCCAATGCGGTGCTGCTGCTGCGGCTGCGCGACATCGAGGCGG
GGCTGCTGCCGCAGTACCTGAGCACTGACGCGACGGCGGCGGTGGCGCAG
CGCGCGCGTGCGCTGGGGCTGCTGGCCGAGGACGCCGAGGCCAGTGAGCA
GTGGGAGAGGGCAGTGCTCAGGCATCAGGACCGAATCGACGCCATCGAAA
CCGCCATCGCCGCCCTGCCCCCCACCCCCACCACCCCCTCCACCGACAAC
ACCCCCGCCAGTGCCGACCTAGACGAAGCACGCGCCCTCCTCACGCAAGC
GTGGCTCGACATGGCAGCGTGCTGCTCACGCCGCGGCGATCTCGACGCCG
CAGCGCAAGCACTCACCGAGACGCTGCGCTGCGCGCCCGGTGGCGCTGCG
CACCCGCTCAACCTTAACTACGTGCAGTTCTACGCCGCAGTCGCGCTGGA
AATGGGCCGCGTTGACTCCGCGGAAGCAGTGCTGGAGGATGCGCTTGCGA
CGTGCCTGCCGCCGCCGTCAGAGTGGGGCGACGGCTACGACACCGACGCC
TATGCGGAGCGCTGCCCTGCGGACATGTGCGCGCTGCTCAGCATCGTGCG
CGACAGGCAGCACCAGCCGTGCGCGGCGCGCGCCGCGCTGCGCCGCGCCG
TCGCCGCGGCGCTCCGCCAGAGCGGCGGCGGCAGCGCGCAGCAGCAGCAG
CAGCAGCAGCAGGAGCGGCCGCGGCGCACCGCCGTCGCGCTCCTGCTGGG
CCTGTGCGAGTACCTGCTGCAGCGGGGGCTGCGGCGCGGCGCGGCGGCAG
CGCTGGCGGCGGCGCGCGCTGCGGAGGGCACCGCCGCCGCCAAGGCCGCG
GAGAGGGGCCTGCCGCCCGCCGCCGGCACGGCGCAGCGCGCGACGTTGCT
GCGCCTCGACAGTGCGCTGCGCGCTGCCGCCGCCGCCAACGATGTCGCCG
CCGCCGCCGCCGCAGTGGAGTCCGCGCAGCTGGCGGCGGAGCTGGAGCCG
CGCAGCGCGGCGGCGTGGGGCGCGCTGGCGGCGGCGCTGCGCGCGGCGCG
CTACCCCGTGGAGGAGGCGGAGGCGCTGGCGGCGGCGCTGGCCTGCTGCA
GCAGCGCTCAGGAGAGGGGGCCCCTCGCGCAGCACGCGCGGCTTGGCGCT
CTGAACCTCGCGCTGGGACGCCCTGCGGAGAGCAAGGCGGCGTGGCTCGG
GGGCGCGCGCGAGTGGCACGTGCCCAGCGTCTGGCTGGGTGCGGGGGTGG
CGGCGATGGAGCTGGAGCAGTGGGAGGAGGCAGAGGCGGCGCTGCAGCAG
GCCAATCGGCTCGATAACGCGGACCCCGCGGTGTGGGGGACGCTGGCGCT
GCTGCTGCTGGCGCAGGGGGACGCGCGCGCTGCAGAGGCGGAGCGCGCGC
TGGACCAGGCGCTGCGGCTGGGCCTCGCCGACGCCGCGCTGCTGCGCAAG
CTCGGCAACGCCTTTGTCTCCGTAGACCGCCTCGCGCGCGCAGAGGACAT
GCTGCGTCGCGCACTGTCCCGCGAGACCGCCGCCGGCAGCAGCGGCGCCG
GCGCGCATGTGCGGCGCCGCCTGGCCGACGTCTTGTCTGCGCAGAACTGC
GTCGCGGCGGCGGTGGGCGAGTACAGGGAGGTGTTGCTGAGCACTGACGC
GCCAGCGGCGGAGCGGCAGGAGGCGCTGAGCCGCTGCGCGCCGCTGCTCA
AGGCGCTCGGGCGCGAGGCGGAGCTGAGGGAGTGGCGCGCGGCGGCGGCG
GCAGTGTGA
back to top