mRNA_12191 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA) HSP 1 Score: 347 bits (889), Expect = 5.840e-121 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query: 1 MQCNAAAAGVKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 504
MQCNAAAAGVKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct: 1 MQCNAAAAGVKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA) HSP 1 Score: 283 bits (723), Expect = 8.200e-96 Identity = 133/156 (85.26%), Postives = 141/156 (90.38%), Query Frame = 1
Query: 37 ASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 504
A RAP +RWSPEED RL R V+ F +NWRRISAVVGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQCRERWTHHL+PAVNKDVF PEEDW I+STQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR
Sbjct: 2 APRRAPVERWSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA) HSP 1 Score: 239 bits (611), Expect = 3.070e-79 Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 142 VVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ--CRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 504
+VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ CRERWTHHLDPAV+KD F EEDWLI+STQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA) HSP 1 Score: 189 bits (480), Expect = 5.420e-59 Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 1
Query: 64 WSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRW 489
W+ +ED RL AV TF K+W R +A VGTK A QCMQRWRR+L+PD++KGRW EEDALL++L+T+G +W E + I GRSAKQCRERW HHLDPAV++ F P ED ++++ QAA GN W+ IAA LPGRTEN VK RW
Sbjct: 1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 175 bits (443), Expect = 4.700e-52 Identity = 80/156 (51.28%), Postives = 110/156 (70.51%), Query Frame = 1
Query: 28 VKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 495
+ +A +RW+PEED +L AV E+NW+ I+ V + QC+QRW + L P L KG W EED LL EL+ +GRK W +++ RI GR++KQCRERW +HLDP++ + ++PEED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct: 73 IMKTKDKAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI) HSP 1 Score: 176 bits (447), Expect = 6.590e-52 Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 1
Query: 31 KLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 504
K AS+R +RW P ED +LT AV+ EK+W+ I+ VG++ VQC+QRW++ LRP L KG+W EEDA L++L T K W LS ++GR++KQCRERW HHLDP++NK + EED +II TQA +GNRWS IAA LPGRTEN++K+R K R
Sbjct: 100 KKASTRP--RRWQPAEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 171 bits (432), Expect = 2.290e-51 Identity = 78/150 (52.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query: 46 RAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 495
+A +RW+PEED +L AV E+NW+ I+ V + QC+QRW + L P L KG W +ED LL EL+ +GRK W +++ RI GR++KQCRERW +HLDP++ + ++ EED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct: 6 KAVPKRWTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A0W8DM41_PHYNI (Gamma-soluble NSF attachment protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM41_PHYNI) HSP 1 Score: 175 bits (444), Expect = 5.350e-50 Identity = 80/156 (51.28%), Postives = 110/156 (70.51%), Query Frame = 1
Query: 28 VKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 495
+ +A +RW+PEED +L AV E+NW+ I+ V + QC+QRW + L P L KG W EED LL EL+ +GRK W +++ RI GR++KQCRERW +HLDP++ + ++PEED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct: 103 IMKTKDKAVPKRWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 258
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.140e-49 Identity = 83/149 (55.70%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 58 QRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 504
+RW PEED +LT AV+ EK+W+ I+ VG++ VQC+QRW++ LRP L KG+W EEDA L++L T K W LS ++GR++KQCRERW HHLDP++NK + EED +II TQA +GNRWS IAA LPGRTEN++K+R K R
Sbjct: 114 RRWQPEEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQR 262
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA) HSP 1 Score: 166 bits (420), Expect = 6.550e-49 Identity = 78/150 (52.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 46 RAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 495
+A +RW+ ED L AVE+ EKNW+ I+A V + QC+QRW + L P L KG W+ ED LL L+ +K W +++ +I GR++KQCRERW +HLDPA+ + ++PEED LI+ QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct: 2 KANPRRWTAAEDEALRSAVESHREKNWKAIAAHVAGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLRRLVAADQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRWKS 151 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12191 ID=mRNA_12191|Name=jgi.p|Trimin1|171771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_85:321237..323471- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGTGCAACGCCGCTGCAGCAGGTGTGAAGTTGGCGAGCAGTCGGGCback to top protein sequence of jgi.p|Trimin1|171771 >Trimin1|171771|e_gw1.85.92.1 ID=Trimin1|171771|e_gw1.85.92.1|Name=jgi.p|Trimin1|171771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp MQCNAAAAGVKLASSRAPAQRWSPEEDGRLTRAVETFDEKNWRRISAVVGback to top mRNA from alignment at Contig_85:321237..323471- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12191 ID=mRNA_12191|Name=jgi.p|Trimin1|171771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2235bp|location=Sequence derived from alignment at Contig_85:321237..323471- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_85:321237..323471- >mRNA_12191 ID=mRNA_12191|Name=jgi.p|Trimin1|171771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_85:321237..323471- (Tribonema minus UTEX_B_3156 )back to top |