mRNA_12200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153107
Unique NamemRNA_12200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A835YRV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV3_9STRA)

HSP 1 Score: 162 bits (410), Expect = 9.370e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 237
            RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA
Sbjct:    1 RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 79          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI000CD8F68A (uncharacterized protein LOC111884893 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8F68A)

HSP 1 Score: 65.1 bits (157), Expect = 1.750e-10
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P+TG+++YLR LL+H  G ++   +RT+ + TY+T+ DA  A G+  D+KE L T EE  S  T  ++RSLF  L L
Sbjct:  232 PSTGELFYLRILLFHQKGCKSLYDIRTVRENTYSTFCDACEALGVTGDDKEWLTTFEEASSWATSFEIRSLFFHLLL 308          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI0010A30B79 (uncharacterized protein LOC114745432 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A30B79)

HSP 1 Score: 63.5 bits (153), Expect = 6.090e-10
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAGRN-FEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P++G+++YLR LL    G   FE ++T++  TY+T++DA FA G++ D+ E +  ++E     TG QLR LFA + L
Sbjct:  747 PSSGELYYLRVLLTKVRGPTCFEDIKTVNGVTYDTFRDACFACGLLDDDSEYISAIKEASVWATGSQLRKLFANMLL 823          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI0010A34E83 (uncharacterized protein LOC114724484 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A34E83)

HSP 1 Score: 63.2 bits (152), Expect = 8.420e-10
Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P++G+++YLR LL    G R++E++RT++D  Y T+++A FA G++ D+KE +  ++E     TG  LR +F ++ L
Sbjct:  825 PSSGELYYLRILLTKVRGPRSYEEIRTVNDVLYPTFREACFALGLLDDDKEFICAIKEAAIWATGTSLRKMFVSMLL 901          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI001929AA4B (uncharacterized protein LOC120276027 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AA4B)

HSP 1 Score: 63.2 bits (152), Expect = 8.430e-10
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            PA G+++YLR LL    G R++E +RTI++  Y TY++A FA GI+ D+ E    L +     TG QLR LF T+ L
Sbjct:  888 PAAGELYYLRLLLNEIKGARSYEDLRTINNVVYATYREACFALGILGDDSEWSDALIQAAHWATGAQLRQLFVTIIL 964          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: UPI001967B690 (uncharacterized protein LOC120580657 n=2 Tax=Medicago truncatula TaxID=3880 RepID=UPI001967B690)

HSP 1 Score: 63.2 bits (152), Expect = 8.470e-10
Identity = 31/79 (39.24%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCLEA 237
            P+TG+V+YLRR+L    G  ++E ++T+++  Y+T+++A +A G + D+KE +  ++E     TG  LR LF TL L A
Sbjct: 1096 PSTGEVYYLRRMLTCVKGPTSYEDIKTVNNILYDTFREACYAMGFLEDDKEYIAAIKEASVWATGVFLRILFVTLLLSA 1174          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5M7H6_LUPAL (ATP-dependent DNA helicase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7H6_LUPAL)

HSP 1 Score: 62.0 bits (149), Expect = 2.130e-9
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAGRN-FEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P TG+++YLR +L    G   +E +RT+SD  Y+T++DA FA G++ D++E +  L+E     +G  LR LF T+ L
Sbjct:  599 PCTGELYYLRMMLTMVKGATCYEDIRTVSDIQYSTFRDACFAMGLLQDDREYMEALKEAYDWGSGFYLRKLFVTMLL 675          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A2U1Q717_ARTAN (ATP-dependent DNA helicase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q717_ARTAN)

HSP 1 Score: 62.0 bits (149), Expect = 2.160e-9
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFA 219
            PA G+++Y R LL H  G  +FE +RT+++ T++TY++A  A G++ D+KE  I L+E     T  +LR LFA
Sbjct:  986 PAAGELFYFRILLAHQKGCTSFEDVRTVNNHTFSTYREACQAMGLLDDDKEWDIALQEAAMSATASELRMLFA 1058          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5LVF8_LUPAL (ATP-dependent DNA helicase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LVF8_LUPAL)

HSP 1 Score: 61.6 bits (148), Expect = 2.920e-9
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P TG+++YLR +L    G R++E +RTIS+  Y T++DA FA G++ D++E +  + E +   +G  LR LF T+ L
Sbjct:  840 PCTGELYYLRMMLTVVKGPRSYEDIRTISENQYPTFRDACFAMGLLKDDREYIDAIREAKDWGSGFYLRKLFVTMLL 916          
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Match: A0A6A5LSH7_LUPAL (ATP-dependent DNA helicase n=4 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LSH7_LUPAL)

HSP 1 Score: 61.6 bits (148), Expect = 2.940e-9
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 PATGDVWYLRRLLYHHAG-RNFEQMRTISDATYNTYKDAAFAKGIVPDNKESLITLEEQESLLTGKQLRSLFATLCL 231
            P TG+++YLR +L    G R++E +RTIS+  Y T++DA FA G++ D++E +  + E +   +G  LR LF T+ L
Sbjct:  832 PCTGELYYLRMMLTVVKGPRSYEDIRTISENQYPTFRDACFAMGLLKDDREYIDAIREAKDWGSGFYLRKLFVTMLL 908          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153107 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRV3_9STRA9.370e-51100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI000CD8F68A1.750e-1044.16uncharacterized protein LOC111884893 n=1 Tax=Lactu... [more]
UPI0010A30B796.090e-1040.26uncharacterized protein LOC114745432 n=1 Tax=Proso... [more]
UPI0010A34E838.420e-1037.66uncharacterized protein LOC114724484 n=1 Tax=Proso... [more]
UPI001929AA4B8.430e-1044.16uncharacterized protein LOC120276027 n=1 Tax=Diosc... [more]
UPI001967B6908.470e-1039.24uncharacterized protein LOC120580657 n=2 Tax=Medic... [more]
A0A6A5M7H6_LUPAL2.130e-940.26ATP-dependent DNA helicase n=1 Tax=Lupinus albus T... [more]
A0A2U1Q717_ARTAN2.160e-942.47ATP-dependent DNA helicase n=1 Tax=Artemisia annua... [more]
A0A6A5LVF8_LUPAL2.920e-940.26ATP-dependent DNA helicase n=1 Tax=Lupinus albus T... [more]
A0A6A5LSH7_LUPAL2.940e-940.26ATP-dependent DNA helicase n=4 Tax=Lupinus albus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:373685..373921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153107|gw1.85.76.1
BRITEko00000,ko01000,ko03029,ko03032
KEGG koko:K15255
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
Evalue6.35e-10
Seed ortholog218851.Aquca_105_00014.1
Hectar predicted targeting categoryother localisation
TranscriptId153429
TrackFilteredModels1
ProteinId153107
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153107gene_12200Tribonema minus UTEX_B_3156 geneContig_85 373685..373921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12200_1exon_12200_1Tribonema minus UTEX_B_3156 exonContig_85 373685..373921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12200CDS_12200Tribonema minus UTEX_B_3156 CDSContig_85 373685..373921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153107Trimin1|153107|gw1.85.76.1Tribonema minus UTEX_B_3156 polypeptideContig_85 373685..373921 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGACCTGCAACAGGCGATGTTTGGTACTTGAGGCGCTTACTTTACCACCA
TGCAGGTAGAAATTTTGAGCAAATGCGCACCATCAGTGATGCCACCTATA
ACACCTACAAGGATGCAGCCTTTGCTAAAGGCATTGTTCCAGATAACAAA
GAAAGCCTTATCACACTTGAAGAGCAGGAGTCATTGTTGACAGGCAAGCA
ATTACGATCGCTCTTTGCTACTTTATGTCTCGAAGCA
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protein sequence of jgi.p|Trimin1|153107

>Trimin1|153107|gw1.85.76.1 ID=Trimin1|153107|gw1.85.76.1|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
RPATGDVWYLRRLLYHHAGRNFEQMRTISDATYNTYKDAAFAKGIVPDNK
ESLITLEEQESLLTGKQLRSLFATLCLEA
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mRNA from alignment at Contig_85:373685..373921-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )
AGACCTGCAACAGGCGATGTTTGGTACTTGAGGCGCTTACTTTACCACCA TGCAGGTAGAAATTTTGAGCAAATGCGCACCATCAGTGATGCCACCTATA ACACCTACAAGGATGCAGCCTTTGCTAAAGGCATTGTTCCAGATAACAAA GAAAGCCTTATCACACTTGAAGAGCAGGAGTCATTGTTGACAGGCAAGCA ATTACGATCGCTCTTTGCTACTTTATGTCTCGAAGCA
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Coding sequence (CDS) from alignment at Contig_85:373685..373921-

>mRNA_12200 ID=mRNA_12200|Name=jgi.p|Trimin1|153107|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_85:373685..373921- (Tribonema minus UTEX_B_3156 )
AGACCTGCAACAGGCGATGTTTGGTACTTGAGGCGCTTACTTTACCACCA
TGCAGGTAGAAATTTTGAGCAAATGCGCACCATCAGTGATGCCACCTATA
ACACCTACAAGGATGCAGCCTTTGCTAAAGGCATTGTTCCAGATAACAAA
GAAAGCCTTATCACACTTGAAGAGCAGGAGTCATTGTTGACAGGCAAGCA
ATTACGATCGCTCTTTGCTACTTTATGTCTCGAAGCA
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