mRNA_12189 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA) HSP 1 Score: 259 bits (661), Expect = 1.180e-87 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 Query: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR Sbjct: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA) HSP 1 Score: 240 bits (613), Expect = 1.110e-79 Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1 Query: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 +VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ CRERWTHHLDPAV+KD F EEDWLI+STQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR Sbjct: 48 VVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ--CRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA) HSP 1 Score: 226 bits (576), Expect = 3.360e-74 Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1 Query: 1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 +VGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQ CRERWTHHL+PAV+KD FT EEDW IVSTQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR Sbjct: 37 VVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQ--CRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.210e-48 Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 1 Query: 4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRW 354 VGTK A QCMQRWRR+L+PD++KGRW EEDALL++L+T+G +W E + I GRSAKQ CRERW HHLDPAVS+ FT ED ++V+ QAA GN W+ IAA LPGRTEN VK RW Sbjct: 28 VGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQ--CRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI) HSP 1 Score: 144 bits (364), Expect = 3.390e-40 Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 VG++ VQC+QRW++ LRP L KG+W EEDA L++L T K W LS ++GR++KQ CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K R Sbjct: 136 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 139 bits (350), Expect = 1.150e-39 Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360 QC+QRW + L P L KG W +ED LL EL+ +GRK W +++ RI GR++KQ CRERW +HLDP++ + ++ EED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+ Sbjct: 45 TQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.170e-39 Identity = 66/122 (54.10%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 VGT+ VQC+QRW++ L+P L KG+W+ EDA L++L+ +G K W +L+ ++ GR++KQ CRERW+HHLDP+V K +T EED I+ Q+ +GN+WS IA LPGRTENAVK+RWK R Sbjct: 57 VGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQ--CRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKALDR 176
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 139 bits (351), Expect = 6.520e-39 Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360 QC+QRW + L P L KG W EED LL EL+ +GRK W +++ RI GR++KQ CRERW +HLDP++ + ++ EED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+ Sbjct: 118 TQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.720e-38 Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360 QC+QRW + L P L KG W +ED LL EL+ +GRK W +++ RI GR++KQ CRERW +HLDP++ + +T EED +I+ QA +GNRWS IAAMLPGRTE+AVK+RWK+ Sbjct: 127 TQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 237
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE) HSP 1 Score: 145 bits (365), Expect = 4.240e-38 Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369 VG++ VQC+QRW++ LRP L KG+W EEDA L++L T K W LS ++GR++KQ CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K R Sbjct: 143 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQR 262 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTGGTAGGGACCAAGAAAGCCGTGCAATGTATGCAGAGGTGGAGGCGATCback to top protein sequence of jgi.p|Trimin1|149860 >Trimin1|149860|gw1.85.60.1 ID=Trimin1|149860|gw1.85.60.1|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSback to top mRNA from alignment at Contig_85:305605..307450- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1846bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_85:305605..307450- >mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )back to top |