mRNA_12174 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141925
Unique NamemRNA_12174
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A836C958_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C958_9STRA)

HSP 1 Score: 600 bits (1548), Expect = 7.010e-216
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query:    1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
            LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN
Sbjct:    1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPAPLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 334          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.170e-75
Identity = 149/336 (44.35%), Postives = 201/336 (59.82%), Query Frame = 1
Query:    1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQRAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPA-PLQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPL-HRLLLHPVAVGTPLSEAPYQTSDMFN 1002
            +L ++P G+IA+R    V VTF PD+AG + F    ++  VD   G  I  DP  A LL LG++ R +                            PA PL C +   ASFPT++V D RVEG  L  + T+A+W   SL+ +N  L  PLT +E+ FN  S+PD+  LPR+P  FVP P G   QV+L+Q+ NPG LP  FS+H PNERDIELE WADEGEPS   +  + IID+L+ F+++PR+ +L PG   TLR+ Y  +S  +DG+H LP+LL+I +GKQ+WL L+G TL    P+L +P DP+ H+L LHPVAVGT    AP Q  +  N
Sbjct: 1013 ILIDEPEGLIAARQRKRVKVTFHPDAAGDFEFACACKVHAVDE-DGNEIALDPEQASLLTLGEEARDVELVRGRDPFSATVAELSKK--------SPALPLTCVVKGSASFPTIIVRDIRVEGAKLGCS-TSAMWAHFSLSALNKTLLTPLTSKEVKFNQESSPDLQLLPRYPCKFVPEPLGNPPQVVLIQIENPGLLPASFSVHLPNERDIELEPWADEGEPSPEVVMVNKIIDELKCFDISPRQASLEPGGSCTLRIAYVPSSREFDGKHTLPILLKIGQGKQMWLDLEGRTLAPREPYLVVPKDPMTHKLPLHPVAVGTRPEHAPLQILECVN 1338          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7S1U5R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5R9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.230e-51
Identity = 127/346 (36.71%), Postives = 171/346 (49.42%), Query Frame = 1
Query:    1 LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIMTDPSSALLLRLGDKQ--------RAIAAXXXXXXXXXXXXXXXXXXXXXXXLHGPA--------------PLQCSITARASFPTVMVSDARVEGGALAAA-------------ATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTL------------PSPAP 897
            L  + P G + +RS   +  TF+P   G Y   LLAR   V  A G R   +     LL   +KQ        RA AA                       +   A              PL C +T RA+FP V+V DAR     L +                A LW    L  +N  L  PLT  E+ FN  S+PD+  + RF + F+P+  G + QVLLL + N G LP++F +HFPNE+++E++ WADEGEP+ AQ+RQ+ II +LR F VTPR G L PG+  TLRL Y+Y S  Y G HD+P+L+++  GKQ +LHL+G TL            P+PAP
Sbjct: 1037 LTVDHPSGRLEARSRTMLKCTFRPPMDGLYEMALLAR---VSKAGGGRRAPEEERPQLLAQDEKQLLEQAHAARARAALYPQLSPSAYPHAALPEWVGRELVEPQAADGLKNGLVDDSALPLTCGLTGRAAFPRVIVRDARCPTPPLPSVNLMSTPSFGNLDFTAAQLWDRLDLPTMNTFLKQPLTPAEVRFNLESSPDLSRVRRFDLRFLPNVIGAQPQVLLLDIANTGFLPSEFDVHFPNEKEVEVDDWADEGEPTTAQVRQTRIIQELRCFSVTPRSGRLQPGESTTLRLRYAYNSNDYGGLHDIPILVKVKYGKQFYLHLKGQTLMPTDTIALADARPAPAP 1379          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7S2CV11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CV11_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.020e-49
Identity = 83/181 (45.86%), Postives = 119/181 (65.75%), Query Frame = 1
Query:  463 IAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDP-LHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
            +  N  S+PD+  L  +P+ F+P+  G     +L+Q  NPG L + FS+H PNER++E+  WADEGEP+ AQ++++ IID+LR F V PR G L P + V L L Y+Y++L YDG+HDL +L +I  GKQ WL L+GTTLP   P+L+ P  P     +L PVA+GT  S+ P Q +++ N
Sbjct:    1 VRLNLDSSPDLSRLKVYPLRFLPAALGSPDNEILVQFSNPGSLTSSFSIHMPNEREVEVPHWADEGEPTVAQIKENHIIDELRCFHVQPRSGVLKPHESVALHLTYNYSNLEYDGKHDLRILCKIINGKQFWLRLEGTTLPPYVPYLYRPQHPDCSAQMLFPVALGTTKSQTPLQMTELIN 181          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A485KCM2_9STRA (Aste57867_2382 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCM2_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.130e-47
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 1
Query:  298 LQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLP 912
            ++ S+ A ASFPT++V D R     L   +TA  W    +  +N  L APLT EE+ FN  S+PD+  L  F + F P+  G   +   +QLRNPG L   F +++PNE D+ELE WAD GEP+A +LRQ+ IID  ++F +TPR G L P Q + L + Y+Y+S+ Y+G HDLP++L +A+GK+L L L G TLP   PHL +P
Sbjct: 1010 VKMSVEASASFPTLVVEDIR-----LLQTSTATGWSQFQVEPINKFLMAPLTKEELRFNAESSPDLSTLTSFHLQFTPAVHGSSTEEAWVQLRNPGSLVVTFRIYYPNESDVELEPWADRGEPTAEELRQNIIIDS-KLFTITPRTGVLQPHQSLVLSISYAYSSMQYEGIHDLPIMLNVAQGKKLTLVLNGRTLPPSTPHLFIP 1208          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A425CU65_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CU65_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.420e-46
Identity = 102/237 (43.04%), Postives = 143/237 (60.34%), Query Frame = 1
Query:  310 ITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGT------PLSEAPYQTSDMFN 1002
            + A ASFP++++ D RV         T+  W    +  +NA L+APLT  E+ FN  S+PDM  L  F + F P+  G  +QV  +QLRNPG L   + +++P+E D+ELE WAD GEP+A +LRQ+ I+D  ++F ++PR G L P + + L L YSY SL YDG HDL V+L +++GK+L L L G TLP  +P L LP D     +LHPV VG       PL++   Q   +FN
Sbjct:  791 VDASASFPSLVIEDLRV-----LRTPTSTAWTQFQVPALNAFLAAPLTQHEVDFNAESSPDMTTLSSFHMQFTPATEGTPSQVAYVQLRNPGSLVVAYRIYYPSETDVELERWADRGEPTANELRQNIIVDS-KLFTISPRSGVLQPHETLVLSLSYSYESLQYDGIHDLSVVLNVSQGKKLTLILHGRTLPVSSPLLFLPSDVC---VLHPVQVGQSMRSTYPLAKPCTQQIPVFN 1018          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: W4FGI1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGI1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.650e-46
Identity = 102/237 (43.04%), Postives = 143/237 (60.34%), Query Frame = 1
Query:  310 ITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGT------PLSEAPYQTSDMFN 1002
            + A ASFP++++ D RV         T+  W    +  +NA L+APLT  E+ FN  S+PDM  L  F + F P+  G  +QV  +QLRNPG L   + +++P+E D+ELE WAD GEP+A +LRQ+ I+D  ++F ++PR G L P + + L L YSY SL YDG HDL V+L +++GK+L L L G TLP  +P L LP D     +LHPV VG       PL++   Q   +FN
Sbjct: 1043 VDASASFPSLVIEDLRV-----LRTPTSTAWTQFQVPALNAFLAAPLTQHEVDFNAESSPDMTTLSSFHMQFTPATEGTPSQVAYVQLRNPGSLVVAYRIYYPSETDVELERWADRGEPTANELRQNIIVDS-KLFTISPRSGVLQPHETLVLSLSYSYESLQYDGIHDLSVVLNVSQGKKLTLILHGRTLPVSSPLLFLPSDVC---VLHPVQVGQSMRSTYPLAKPCTQQIPVFN 1270          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A7R9YEH2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEH2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.700e-46
Identity = 96/210 (45.71%), Postives = 127/210 (60.48%), Query Frame = 1
Query:  295 PLQCSITARASFPTVMVSDARV--------------EGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTL 882
            PL C +  RA+FP   V D R                       +T+ LW+   +A++NA L  PLT EE+  N AS+PD+  L  F V F P+  G   +VLLL + N G LP +F +HFPNE+D+E+E WADEG+P+  Q+R + II  +R F V+P+ G L PG+ VTLRL YSY S  YDG HDLPVL++I  GKQ +LHL+G TL
Sbjct:  725 PLVCRMRGRAAFPRFEVRDLRCPTYPEPTPELFTESSDTVPLERSTSQLWRRLDVAKLNAFLFQPLTPEEVRLNMASSPDLTRLNSFDVRFTPAALGSAEEVLLLDVVNTGFLPANFRVHFPNEKDVEVEDWADEGDPTETQVRVTRIIQDIRCFGVSPKAGVLEPGEAVTLRLSYSYESRDYDGVHDLPVLVKIRHGKQFYLHLKGCTL 934          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: A0A6G0WV66_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WV66_9STRA)

HSP 1 Score: 172 bits (436), Expect = 3.570e-44
Identity = 93/220 (42.27%), Postives = 135/220 (61.36%), Query Frame = 1
Query:  298 LQCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPLTDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLPGQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVG 957
            ++ ++ A ASFPT++V D R++       +T+  W    +  +N  L  PLT EE+  N  S+PD+  L +F + F P+  G  ++ + +QL NPG L   F ++FPNE D+ELE WAD GEP+A +LRQ+ IID  ++F +T R G L P Q + L + YSY S+ Y+G HDLP++L +A+GK+L L L G TL    PHL LP    H + L PV +G
Sbjct: 1003 VKMAVKASASFPTLVVQDIRLQN-----TSTSTAWSQFQVEPINTFLMTPLTKEELKLNAESSPDLSTLTKFNLQFTPAVVGSPSEDVWIQLFNPGSLVVSFRIYFPNESDVELEPWADRGEPTAEELRQNIIIDT-KLFTITSRSGVLEPKQSLLLCMSYSYASMQYNGIHDLPIILSVAQGKKLALVLNGKTLSVSTPHLFLPN---HTVSLSPVMLG 1213          
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 6.860e-44
Identity = 85/177 (48.02%), Postives = 120/177 (67.80%), Query Frame = 1
Query:  481 STPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTDFSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLP---GQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 1002
            S+PD   LPRF V F+PS  G+    + LQ+ NPG LPT  ++  PN + +E+E WA+EGEP+A +LRQ++IID+L+ F +TP  GT++    G+G  L + YS  SL Y G HDLPVL+ I +G+  WL L+GTT+P  +P L++P       +L PVA+GTPLSEAP QT+++ N
Sbjct: 1175 SSPDTSQLPRFDVPFIPSVIGKGPVTITLQVSNPGFLPTSVTVKLPNAKPVEMETWANEGEPTAEELRQNEIIDRLKAFSLTPDPGTVVEVSAGEGRPLVISYSADSLSYGGVHDLPVLVSIKEGRHFWLDLKGTTVPPQSPTLYVPTGLPRSYVLEPVAIGTPLSEAPLQTTELLN 1351          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141925 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C958_9STRA7.010e-216100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2S9Y5_9STRA1.170e-7544.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U5R9_9STRA2.230e-5136.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2CV11_9STRA3.020e-4945.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A485KCM2_9STRA3.130e-4745.37Aste57867_2382 protein n=1 Tax=Aphanomyces stellat... [more]
A0A425CU65_9STRA3.420e-4643.04Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FGI1_9STRA3.650e-4643.04Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7R9YEH2_9STRA6.700e-4645.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0WV66_9STRA3.570e-4442.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D7FIG0_ECTSI6.860e-4448.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:201752..205011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141925|gw1.85.41.1
Preferred nameCCDC108
Max annot lvl2759|Eukaryota
EggNOG OGs2CMXN@1|root,2QSJW@2759|Eukaryota
Evalue2.38e-47
Seed ortholog157072.XP_008880528.1
Hectar predicted targeting categorymitochondrion
TranscriptId142247
TrackFilteredModels1
ProteinId141925
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141925gene_12174Tribonema minus UTEX_B_3156 geneContig_85 201752..205011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141925Trimin1|141925|gw1.85.41.1Tribonema minus UTEX_B_3156 polypeptideContig_85 201752..205011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12174_4exon_12174_4Tribonema minus UTEX_B_3156 exonContig_85 201752..201962 -
exon_12174_3exon_12174_3Tribonema minus UTEX_B_3156 exonContig_85 202536..202771 -
exon_12174_2exon_12174_2Tribonema minus UTEX_B_3156 exonContig_85 204304..204569 -
exon_12174_1exon_12174_1Tribonema minus UTEX_B_3156 exonContig_85 204723..205011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12174CDS_12174Tribonema minus UTEX_B_3156 CDSContig_85 204723..205011 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTATTGGCCAACAAGCCGCGCGGCATCATCGCCTCGCGCAGCACCGTGTC
TGTGACAGTTACGTTTCAGCCCGACAGTGCGGGGGCGTACCGGTTCAACC
TGCTGGCGCGGCTGTGCGGCGTGGATGCGGCAACGGGCGCGCGCATCATG
ACAGATCCTAGTAGCGCGCTGCTGCTGCGGCTCGGCGACAAGCAGCGCGC
AATTGCCGCCGCCGCCGCCGCCGCCGCAGCGCAGCCGGAAGCGGGCAGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTACACGGCCCGGCGCCGCTG
CAGTGCAGCATCACCGCGCGCGCCTCCTTCCCCACGGTCATGGTCAGCGA
CGCGAGGGTGGAGGGGGGGGCGCTCGCAGCGGCGGCGACGGCGGCGCTGT
GGCAGACGCACAGCCTTGCGCGCGTGAATGCGCTGCTGTCGGCGCCGCTA
ACGGATGAGGAGATTGCGTTCAACTGCGCGAGCACGCCCGATATGGATGC
GCTGCCGCGCTTCCCCGTCGCGTTCGTGCCGAGCCCCAGGGGGGAGCGCG
CTCAGGTGCTGCTGCTGCAGCTGCGCAACCCCGGCCACCTCCCCACCGAC
TTCAGCCTGCACTTTCCCAACGAGCGCGACATTGAGCTGGAGCTGTGGGC
CGATGAGGGGGAGCCCAGCGCTGCACAGCTGCGGCAGAGCGACATCATCG
ACAAACTTCGAGTGTTTGAGGTGACGCCCCGCAGGGGGACGCTGCTGCCG
GGGCAGGGGGTTACGCTCCGTCTTGGGTACAGTTACACCAGTCTCCTGTA
CGACGGCCGGCACGACCTGCCAGTGCTGCTGCGCATCGCCAAGGGCAAGC
AGCTCTGGCTACACCTCCAGGGCACCACGCTACCCTCCCCCGCCCCCCAC
CTGCACCTGCCACTGGACCCCCTTCACCGCCTTCTGCTGCACCCCGTCGC
CGTGGGAACCCCCCTGTCCGAAGCCCCCTACCAAACTTCCGACATGTTCA
AC
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protein sequence of jgi.p|Trimin1|141925

>Trimin1|141925|gw1.85.41.1 ID=Trimin1|141925|gw1.85.41.1|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp
LLANKPRGIIASRSTVSVTVTFQPDSAGAYRFNLLARLCGVDAATGARIM
TDPSSALLLRLGDKQRAIAAAAAAAAAQPEAGSGSSSSSSSSSLHGPAPL
QCSITARASFPTVMVSDARVEGGALAAAATAALWQTHSLARVNALLSAPL
TDEEIAFNCASTPDMDALPRFPVAFVPSPRGERAQVLLLQLRNPGHLPTD
FSLHFPNERDIELELWADEGEPSAAQLRQSDIIDKLRVFEVTPRRGTLLP
GQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPH
LHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN
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mRNA from alignment at Contig_85:201752..205011-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3260bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )
CTATTGGCCAACAAGCCGCGCGGCATCATCGCCTCGCGCAGCACCGTGTC TGTGACAGTTACGTTTCAGCCCGACAGTGCGGGGGCGTACCGGTTCAACC TGCTGGCGCGGCTGTGCGGCGTGGATGCGGCAACGGGCGCGCGCATCATG ACAGATCCTAGTAGCGCGCTGCTGCTGCGGCTCGGCGACAAGCAGCGCGC AATTGCCGCCGCCGCCGCCGCCGCCGCAGCGCAGCCGGAAGCGGGCAGCG GCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTACACGGCCGTGAAGCGCCC AAAGACGACAACATGGATCATTCCGCCACTGGTATCAGCGCTGCTGCTGC TGCTACCGCTGCCGGCAGTGCAGCGCCGTCCCATGCCAGCGCCGCCGCCG CCGCCGCCGCCGCCAGTGGCTCCGCGTCGGCAGCGGCAGCAGCGGCGCCG CTGCAGTGCAGCATCACCGCGCGCGCCTCCTTCCCCACGGTCATGGTCAG CGACGCGAGGGTGGAGGGGGGGGCGCTCGCAGCGGCGGCGACGGCGGCGC TGTGGCAGACGCACAGCCTTGCGCGCGTGAATGCGCTGCTGTCGGCGCCG CTAACGGATGAGGAGATTGCGTTCAACTGCGCGAGCACGCCCGATATGGA TGCGCTGCCGCGCTTCCCCGTCGCGTTCGTGCCGAGCCCCAGGGGGGAGC GCGCTCAGGTATGTAACAGTTGTAACAGTCTGTAACAGTTGTAACAAGGG TGACCGTGGTGACGGCCGCCCTGTGCACACGCATGGTCTAGCAGGTGTAC TTGGATGTACAACGCCTTTGTGTGCAAGTAGTCGGTGCGAGAGGCTTACT GGAGCCTGTAGCACTGCACATGTGTTTATGATTGCGCGCTCCTGACTTCC CTCACGTGCGCATGATCACGATACTTGCAGGTTCACTTAGTGCAGGGTAG GTCGACGTACATGGTGGATTCACTTCACTGAGTGGAGCAGCTTGAATGCA CGTGCGCCAGCATATCATGTCTCGGCAGCCTCTGACACGTCAGCACACAT ACTTGAGGCCGTTTGCGTGACCAAGCAGCAACTGGCGTTTGCTTTAGACT CCTCAACAACTGCCTTTTGTGTGCATGTCCAATTGTCCAGGGTGATTTCG CACAAGCCATGTATCGGCTAGTACTGTACCAAATGCAGAATGTCAAGCGC CACATAAACACCACTCAAGGCGCTATATGGTTTAATGTGCCATGTCTTAG CGTATGTGCACGGTTCTTCCAAGTACACGAGTCTTTGTGCCAAACCAGGT ATGTATGTACCCCTGTAGTCAGTGCTCAGCCAGCGCATCGCCATGCGGCG CCCTCTTCAGTGCGTTTCTGCTGCCATACTTAGGCTCCTCAACAATTGCC ATTTGCATGCATATCCCATTGTGCTGGATGATCCAGCACAAGTCATTGAT CGGCTACTTCTGCAGCAAAGGCGGAATGTCAAGCGGCACCTGAACGGTTT CCCATTACTCAACATATGTTTATGATGCTTCGAAGTACACGAGTCATTGT GCCAAGCCAGGTATGAAGGGCACGTATGTACCCCTGTAGTCAGCGCTCAG CCAGTGCAGCGCCATGCTGCGCCCTCTTCACTGCATCTCTACTGCCAGGA TAATGCACAGGTGCCTCTGCTGCATCTGCGTCCCACCCGGCGCTGCCTCC CCCCGCTGACCCTAGAGTTAGGGTTGGGTCACAATGCTCAGCTACAAGTT ACAAAGGGTTGTTTGACAGGCTTCTCGGTTGTGGGTGTGCCGCCACTGGC TTCAAGCACCTCGAATTATCAAGTTCATCAAGTCACGTGCCTCCAGCGTT TGAGTATGTCGCACCTGATCCGTGCGCAGGATCCTACCCCAAACCCTAAC CACTCTGACCCTGAGTACCTCGACCATCAAACTCATGAAGCTCAACAGGT GACGCCCCAGTGTTTGAGGCTTCGCGCCTGACCGCGTCGGCATTGCTCAA CCATGCACAAAATTCTACCCCAAACCCCAACGCCCCTAACCCTGAGTACC AACCATCAAGCTCATCAGGCTCAACAGGTGACGCCCCGGTGTCTGACCAC GTCGCACCTGATCGCCCGAAACGGACTACCAAGACAAAAAAAACGTGTTG TGATGTTTACCCTAAGAAATAGTTGTAATATACCTACTAGTGAAGTTGTT AACAGTGACGTGTCTGCACCGCTCGACCGCTCGCGCGCAGGTGCTGCTGC TGCAGCTGCGCAACCCCGGCCACCTCCCCACCGACTTCAGCCTGCACTTT CCCAACGAGCGCGACATTGAGCTGGAGCTGTGGGCCGATGAGGGGGAGCC CAGCGCTGCACAGCTGCGGCAGAGCGACATCATCGACAAACTTCGAGTGT TTGAGGTGACGCCCCGCAGGGGGACGCTGCTGCCGGGGCAGGGGGTTACG CTCCGTCTTGGGTACAGTTACACCAGGTGAACCAGATTTACAAGAATGAG TCTGGCACGGTCCATAGTTTGCATACATGGTCGTCTGTGTGGCAAGACCC TCAGCGAGGTGGCGCCGACAGTTATGCAAACGCACGCGCCGGTGCGTGTC GCTTTGATGACACCATGCAGCGCTGCTGCAGCAGCAATGAATTCACAAGC ATGCATCGCAGTGATGAATGGCGGTATGTCTGTCAATTGCAATGTTTATT GCTACCGTGGAGGCTTCAATGATGCTGCCAGCGGTCGCTTTGATGCAAAA TGCTTGTGTGAGGATAGCACATTTTTCAAGGGACATGTTTTAAATCATGA AAATTGAGTATCTGCAGCTACCCTTTGCCCTGACCACATCCGCAGCTGGC CCACAACAGTCACTTCGTCTTTGATTACGCAGTGTGAAATGCACCTTCAA ACAGGTGCCCTTTCCTTGCGTTCCAGATGGAGTTACGCCATGACACGCCC TGCTACCCTTGTGTGCCTCTTTGTGCATGTTCCTCTCTCATTTGCAATAC CCCCTGCCCCCCGCCCCTTCCTTTACCCCCCCCCCCCCCCCCCCCGCAGT CTCCTGTACGACGGCCGGCACGACCTGCCAGTGCTGCTGCGCATCGCCAA GGGCAAGCAGCTCTGGCTACACCTCCAGGGCACCACGCTACCCTCCCCCG CCCCCCACCTGCACCTGCCACTGGACCCCCTTCACCGCCTTCTGCTGCAC CCCGTCGCCGTGGGAACCCCCCTGTCCGAAGCCCCCTACCAAACTTCCGA CATGTTCAAC
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Coding sequence (CDS) from alignment at Contig_85:201752..205011-

>mRNA_12174 ID=mRNA_12174|Name=jgi.p|Trimin1|141925|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_85:201752..205011- (Tribonema minus UTEX_B_3156 )
CTATTGGCCAACAAGCCGCGCGGCATCATCGCCTCGCGCAGCACCGTGTC
TGTGACAGTTACGTTTCAGCCCGACAGTGCGGGGGCGTACCGGTTCAACC
TGCTGGCGCGGCTGTGCGGCGTGGATGCGGCAACGGGCGCGCGCATCATG
ACAGATCCTAGTAGCGCGCTGCTGCTGCGGCTCGGCGACAAGCAGCGCGC
AATTGCCGCCGCCGCCGCCGCCGCCGCAGCGCAGCCGGAAGCGGGCAGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTACACGGCCCGGCGCCGCTG
CAGTGCAGCATCACCGCGCGCGCCTCCTTCCCCACGGTCATGGTCAGCGA
CGCGAGGGTGGAGGGGGGGGCGCTCGCAGCGGCGGCGACGGCGGCGCTGT
GGCAGACGCACAGCCTTGCGCGCGTGAATGCGCTGCTGTCGGCGCCGCTA
ACGGATGAGGAGATTGCGTTCAACTGCGCGAGCACGCCCGATATGGATGC
GCTGCCGCGCTTCCCCGTCGCGTTCGTGCCGAGCCCCAGGGGGGAGCGCG
CTCAGGTGCTGCTGCTGCAGCTGCGCAACCCCGGCCACCTCCCCACCGAC
TTCAGCCTGCACTTTCCCAACGAGCGCGACATTGAGCTGGAGCTGTGGGC
CGATGAGGGGGAGCCCAGCGCTGCACAGCTGCGGCAGAGCGACATCATCG
ACAAACTTCGAGTGTTTGAGGTGACGCCCCGCAGGGGGACGCTGCTGCCG
GGGCAGGGGGTTACGCTCCGTCTTGGGTACAGTTACACCAGTCTCCTGTA
CGACGGCCGGCACGACCTGCCAGTGCTGCTGCGCATCGCCAAGGGCAAGC
AGCTCTGGCTACACCTCCAGGGCACCACGCTACCCTCCCCCGCCCCCCAC
CTGCACCTGCCACTGGACCCCCTTCACCGCCTTCTGCTGCACCCCGTCGC
CGTGGGAACCCCCCTGTCCGAAGCCCCCTACCAAACTTCCGACATGTTCA
AC
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