mRNA_12095 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|336541
Unique NamemRNA_12095
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A836C982_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C982_9STRA)

HSP 1 Score: 544 bits (1401), Expect = 2.990e-195
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 3
Query:   18 MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL 851
            MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL
Sbjct:    1 MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQTL 278          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A833VAE8_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VAE8_9POAL)

HSP 1 Score: 224 bits (570), Expect = 3.780e-68
Identity = 141/280 (50.36%), Postives = 183/280 (65.36%), Query Frame = 3
Query:    6 TVATMSDTGSAGSNDIASLEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREAD-IAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            TVA++S++G +GS     L+G LF+Y   P  VAF+ G  +  +V LGGLTDG L+ +Y   L+ AL+  +WSLV P LS+SY+GYG  SL QD  E+  L+S L     +EG +VL+GHSTGCQ  VH+MK +  A  K V GV+LQA VSDR+Y ATLP+T  L+ LA  +        LMPREAD  APITAYRY SL A  GDDDMFS D S+++L+ RLGHM + P  ++ S+ADEYVP  VD  ALV+R+  A+ G  K V +  G H LS  +
Sbjct:   41 TVASLSESGGSGSRK-KQLKGALFKYGSNPAQVAFKTGDFSQQVVFLGGLTDGLLATEYIEPLSIALENNNWSLVQPLLSSSYIGYGTSSLEQDALEIDQLISYLINNENSEG-VVLLGHSTGCQDIVHYMKTS-LACSKAVRGVILQAPVSDREYRATLPETPVLIDLAAKMISDGKGNELMPREADSCAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMASTPCQVIFSMADEYVPEYVDKKALVDRLCRALGGAEK-VAIEWGNHSLSNRV 316          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A2P6QXB5_ROSCH (Putative alpha/Beta hydrolase n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QXB5_ROSCH)

HSP 1 Score: 212 bits (540), Expect = 1.310e-63
Identity = 133/293 (45.39%), Postives = 178/293 (60.75%), Query Frame = 3
Query:   21 SDTGSAGSNDIAS-------LEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPL----TALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQ 845
            SD+GS GS D +          G LF+Y  +P  VAF+ G +   ++ +GGLTDG L+ +Y   LA ALD + WSLV   +S+SY GYG  SL QD  EL  L+S       +EG +VL+GHSTGCQ  VH+++    A  + V   +LQA VSDR+Y ATLP+T  ++ LA T+      + LMP EAD+APITAYRY SL A  GDDDMFS D + ++L+ +LGHMT  P  ++ S+ADEYVP  VD  ALV+R+  AM G  K V +  G H LS  +    +    F++
Sbjct:   42 SDSGSGGSGDFSGPVVRKNQFRGALFKYGPKPIQVAFKTGDYRQQVIFIGGLTDGFLATEYLEPLAIALDKEKWSLVQLLMSSSYNGYGTSSLKQDAMELDQLISYFINKEDSEG-VVLIGHSTGCQDIVHYIR-TNAACSRAVRAAILQAPVSDREYRATLPETAAMIDLASTMINEGRGSQLMPSEADLAPITAYRYHSLCAYNGDDDMFSSDLTDDQLRLKLGHMTNTPCQVIYSMADEYVPDYVDKKALVQRLCKAMGGAEK-VEIEHGNHSLSNRVHEAVDAMIDFVK 331          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A6P5HEC2_ANACO (UPF0613 protein PB24D3.06c n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5HEC2_ANACO)

HSP 1 Score: 212 bits (540), Expect = 1.950e-63
Identity = 135/278 (48.56%), Postives = 176/278 (63.31%), Query Frame = 3
Query:   12 ATMSDTGSAGSNDIASLEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            A+  D   +GS     L G LF+Y  +P  VAF+ G  N  ++ +GGLTDG L+ +Y   L+ AL+ + WSLV P LS+SY+GYG  SL QD  EL  L+  L     +EG +VL+GHSTGCQ  VH+M+     +R  V GV+LQA VSDR+Y ATLP+T  ++ L+  +        LMPREAD  APITAYRY SL+A  GDDDMFS D S+++L+ RLGHM+  P  ++ S+ADEYVP  VD  ALVER+  AM G  K V +  G H LS  +
Sbjct:   60 ASFVDMSGSGSRK-KQLRGTLFKYGPKPIQVAFKTGDFNQQVIFIGGLTDGFLATEYLEPLSLALENEKWSLVQPLLSSSYIGYGTSSLEQDAVELDQLIGYLINKENSEG-VVLLGHSTGCQDIVHYMRTNFSCSRA-VRGVILQAPVSDREYRATLPETAAMIDLSAKMISEGRAMDLMPREADPGAPITAYRYHSLSAYMGDDDMFSSDLSEDQLRQRLGHMSSTPCQVIFSMADEYVPEYVDKKALVERLCQAMGGAEK-VEIEWGNHSLSNRV 333          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A5P1FII7_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FII7_ASPOF)

HSP 1 Score: 211 bits (538), Expect = 1.980e-63
Identity = 135/279 (48.39%), Postives = 179/279 (64.16%), Query Frame = 3
Query:   12 ATMSDTGSAGSNDIAS-LEGRLFRY--RPGLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTL----PLTALMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            A+ S   +A +N IA  L G L +Y  +P  VAF+ G  N  ++ +GGLTDG L+ +Y   L++AL+ + WSLV P L++SY+GYG  SL QD  EL  L+  L     +EG +VL+GHSTGCQ  VH+M+    A  + V G +LQA VSDR+Y ATLP+T E++ LA  +        LMPR+A+  APITAYRY SL+A  GDDDMFS D S+++LK RLGHM+  P  ++ S+ADEYVP  VD  ALVER+  AM G  K V +  G H LS  +
Sbjct:   34 ASASSLRTAQANPIAGELRGVLLKYGPKPAQVAFRTGDFNQQVIFIGGLTDGLLATEYLEPLSSALENEKWSLVQPLLTSSYIGYGTSSLEQDALELDQLIGYLINKENSEG-VVLLGHSTGCQDIVHYMR-TNLAFSRAVRGAILQAPVSDREYRATLPETAEMIDLALNMINEGRAMDLMPRQANPDAPITAYRYHSLSAYMGDDDMFSSDLSEDQLKARLGHMSNTPCQVIFSMADEYVPDYVDKKALVERLCRAMGGAEK-VEIEWGNHSLSNRV 309          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A6G1F8K6_9ORYZ (Uncharacterized protein n=3 Tax=Oryzeae TaxID=147380 RepID=A0A6G1F8K6_9ORYZ)

HSP 1 Score: 212 bits (539), Expect = 2.820e-63
Identity = 132/262 (50.38%), Postives = 170/262 (64.89%), Query Frame = 3
Query:   60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            L+G LF+Y P    VAF+ G  N  ++ +GGLTDG L+  Y   L+ AL+V+ WSLV P LS+SY GYG+ SL QD  EL  L+S L     +EG ++L+GHSTGCQ  VH+M+    A  K V+GV+LQA VSDR+Y ATLP+T E++ LA  +        LMPREA+  APITAYRY SL A  GDDDMFS D S+++L+ RLGHM T    ++ S+ DEYVP  VD  ALV+RI  A+ G  K V +  G H LS  +
Sbjct:   76 LQGTLFKYGPKSAQVAFRTGDFNHQVIFIGGLTDGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSEG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSECRGMDLMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRICRALGGAEK-VEIEWGNHALSNRM 334          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A1B6Q9U3_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6Q9U3_SORBI)

HSP 1 Score: 210 bits (535), Expect = 7.190e-63
Identity = 130/262 (49.62%), Postives = 169/262 (64.50%), Query Frame = 3
Query:   60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            L G LF+Y P    VAF+ G  N  ++ +GGLTDG L+  Y   L+ AL+V+ WSLV P LS+SY GYG+ SL QD  EL  L+S L     +EG ++L+GHSTGCQ  VH+M+    A  K V+GV+LQA VSDR+Y ATLP+T E++ LA  +        LMPREA+  APITAYRY SL +  GDDDMFS D S+++L+ RLGHM T    ++ S+ DEYVP  VD  ALV+R+  A+ G  K V +  G H LS  +
Sbjct:   60 LRGALFKYGPKSAQVAFRTGDFNHQVIFIGGLTDGLLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSEG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMISEGRGMELMPREANPDAPITAYRYHSLCSYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLCRALGGAEK-VEIEWGNHALSNRV 318          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A0K9NLL9_ZOSMR (Esterase/lipase superfamily protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLL9_ZOSMR)

HSP 1 Score: 210 bits (534), Expect = 8.330e-63
Identity = 127/289 (43.94%), Postives = 174/289 (60.21%), Query Frame = 3
Query:    9 VATMSDTGSAGSNDIASLEGRLFRYRPGLV--AFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDC---DELVDLLSCLPAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTL----PLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHMT-VPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHIDVVAEETSAFLQ 845
            VA   D     +N    L+G +F+Y P  V  AF+ G     L+ +GGLTDG  + +Y   L+ AL+ + WSLV P LS+SY GYG  SL QD    D+L+D L        +VL+G STGCQ  V++M+ +  A  K V   +LQA VSDR++ ATLP T  ++ LA ++      T LMP+EA+ APITAYRY SL+A  GDDDMFS DF+ ++L+ +LGHMT  P  ++ S+ADE VP  VD  ALVER+  A+ G  K V +  G H LS  ++   E   +F++
Sbjct:   37 VAVGGDATGCSTNKKNHLKGSMFKYGPNSVQVAFKTGDFKQQLIFIGGLTDGLFATQYVEPLSVALEKEKWSLVQPLLSSSYTGYGTSSLKQDSLELDQLIDYLINKENSEGVVLLGTSTGCQDIVYYMR-SNSACSKAVRAAILQAPVSDREHRATLPNTSAMIDLAASMISEGKATELMPKEAECAPITAYRYYSLSAYNGDDDMFSSDFTDDQLRLKLGHMTHTPCQVIFSMADECVPNYVDKKALVERLCKALGGAEK-VEIEWGNHSLSNRVEEAVEAIISFVR 323          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: A0A0E0LIH2_ORYPU (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=A0A0E0LIH2_ORYPU)

HSP 1 Score: 210 bits (535), Expect = 9.500e-63
Identity = 129/262 (49.24%), Postives = 171/262 (65.27%), Query Frame = 3
Query:   60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            ++G LF+Y P    VAF+ G  N  ++ +GGLTDG L+  Y   L+ AL+V+ WSLV P LS+SY GYG+ SL QD  EL  L+S L     ++G ++L+GHSTGCQ  VH+M+    A  K V+GV+LQA VSDR+Y ATLP+T E++ LA  +        LMPREA+  APITAYRY SL A  GDDDMFS D S+++L+ RLGHM T    ++ S+ DEYVP  VD  ALV+R+  A+ G  K V++  G H LS  +
Sbjct:   70 VQGTLFKYGPKSAQVAFKTGDFNHQVIFIGGLTDGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSDG-VILLGHSTGCQDIVHYMR-TNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMDLMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLCRALGGAEK-VKIEWGNHALSNRV 328          
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Match: I1H2M8_BRADI (Uncharacterized protein n=3 Tax=Pooideae TaxID=147368 RepID=I1H2M8_BRADI)

HSP 1 Score: 209 bits (532), Expect = 2.600e-62
Identity = 129/262 (49.24%), Postives = 168/262 (64.12%), Query Frame = 3
Query:   60 LEGRLFRYRP--GLVAFQHGRHNDCLVLLGGLTDGPLSLKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCL----PAEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATLPQTQELVTLARTLPLTA----LMPREADI-APITAYRYLSLAARGGDDDMFSDDFSQEELKDRLGHM-TVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKCVRVAGGLHDLSGHI 809
            L G LF+Y P    VAF+ G  N  ++ +GGLTDG L+  Y   L+ AL+V+ WSLV P LS+SY+GYG+ SL QD  EL  L+  L     +EG ++L+GHSTGCQ  VH+M+    A  K V+GV+LQA VSDR+Y ATLP+T E++ LA  +        LMPREA+  APITAYR+ SL A  GDDDMFS D S+++L+ RLGHM T    ++ S+ DEYVP  VD  ALV R+  A+ G  K V +  G H LS  +
Sbjct:   69 LHGTLFKYGPKSANVAFRTGDFNHQVIFIGGLTDGLLATDYLEPLSLALEVEKWSLVQPLLSSSYIGYGISSLEQDALELDQLIGYLINKENSEG-VILLGHSTGCQDIVHYMR-TNLACSKAVSGVILQAPVSDREYRATLPETAEMIDLASKMISEGRGMDLMPREANSDAPITAYRFHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQIIFSMGDEYVPEYVDKKALVNRLCQALGGAEK-VEIEWGDHALSNRV 327          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336541 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C982_9STRA2.990e-195100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A833VAE8_9POAL3.780e-6850.36Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
A0A2P6QXB5_ROSCH1.310e-6345.39Putative alpha/Beta hydrolase n=3 Tax=Rosoideae Ta... [more]
A0A6P5HEC2_ANACO1.950e-6348.56UPF0613 protein PB24D3.06c n=2 Tax=Ananas comosus ... [more]
A0A5P1FII7_ASPOF1.980e-6348.39Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A6G1F8K6_9ORYZ2.820e-6350.38Uncharacterized protein n=3 Tax=Oryzeae TaxID=1473... [more]
A0A1B6Q9U3_SORBI7.190e-6349.62Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]
A0A0K9NLL9_ZOSMR8.330e-6343.94Esterase/lipase superfamily protein n=1 Tax=Zoster... [more]
A0A0E0LIH2_ORYPU9.500e-6349.24Uncharacterized protein n=11 Tax=Oryza TaxID=4527 ... [more]
I1H2M8_BRADI2.600e-6249.24Uncharacterized protein n=3 Tax=Pooideae TaxID=147... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:85598..86451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|336541|MIX45304_12_80
DescriptionProtein of unknown function (DUF1749)
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4840@1|root,KOG4840@2759|Eukaryota,37HGB@33090|Viridiplantae,3GEWN@35493|Streptophyta,3KV82@4447|Liliopsida,3I846@38820|Poales
Evalue1.66e-64
Seed ortholog40149.OMERI07G05910.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1749
Ec32 orthologEc-11_002760.1
TranscriptId336863
TrackFilteredModels1
ProteinId336541
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336541gene_12095Tribonema minus UTEX_B_3156 geneContig_84 85598..86451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12095_1exon_12095_1Tribonema minus UTEX_B_3156 exonContig_84 85598..86451 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12095UTR5_12095Tribonema minus UTEX_B_3156 five_prime_UTRContig_84 85598..85614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12095CDS_12095Tribonema minus UTEX_B_3156 CDSContig_84 85615..86451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336541Trimin1|336541|MIX45304_12_80Tribonema minus UTEX_B_3156 polypeptideContig_84 85615..86451 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=854bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCTCACCGTGGCCACCATGTCCGACACTGGATCGGCCGGCAGTAATGAC
ATCGCAAGTCTCGAGGGGCGCCTATTTCGGTACCGACCGGGGCTGGTGGC
TTTTCAACACGGCCGGCACAATGATTGTCTCGTACTCCTTGGGGGCTTGA
CAGATGGCCCTTTGAGCTTAAAGTACAGTACAGCTTTAGCAGCAGCGCTA
GACGTGCAGAGTTGGTCACTGGTCCTGCCCACGCTATCGACGAGCTACCT
CGGCTACGGCGTAGGCAGCCTGACGCAGGACTGCGATGAGCTGGTAGACC
TGCTGTCCTGCCTGCCTGCTGAAGGCCGCATTGTCCTCATGGGCCACAGC
ACAGGGTGCCAGATCAGCGTGCACTTCATGAAGCACGCGCCGCAGGCCGC
GCGCAAACGCGTCGCCGGCGTCGTCCTACAGGCAGCAGTGAGCGATCGCG
ACTACCTCGCAACGCTGCCGCAGACGCAGGAACTGGTGACGTTGGCGCGC
ACGCTGCCGCTGACGGCACTCATGCCGCGCGAAGCCGACATCGCGCCCAT
CACCGCCTACCGCTATCTCAGCCTGGCGGCGCGCGGCGGCGACGACGACA
TGTTCTCCGATGACTTCAGCCAAGAAGAGCTGAAGGACAGGCTGGGGCAC
ATGACCGTTCCGACGCTGCTGCTGGCGTCGCTGGCAGACGAATACGTGCC
GGCAGGCGTGGACGTTAGTGCACTGGTGGAGCGCATTGCGGGCGCCATGC
CTGGATGCCGGAAGTGCGTGCGTGTGGCGGGAGGGCTGCATGACTTGAGC
GGGCACATCGACGTTGTGGCGGAGGAGACTTCAGCTTTTCTGCAGACATT
ATGA
back to top

protein sequence of jgi.p|Trimin1|336541

>Trimin1|336541|MIX45304_12_80 ID=Trimin1|336541|MIX45304_12_80|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=279bp
MSDTGSAGSNDIASLEGRLFRYRPGLVAFQHGRHNDCLVLLGGLTDGPLS
LKYSTALAAALDVQSWSLVLPTLSTSYLGYGVGSLTQDCDELVDLLSCLP
AEGRIVLMGHSTGCQISVHFMKHAPQAARKRVAGVVLQAAVSDRDYLATL
PQTQELVTLARTLPLTALMPREADIAPITAYRYLSLAARGGDDDMFSDDF
SQEELKDRLGHMTVPTLLLASLADEYVPAGVDVSALVERIAGAMPGCRKC
VRVAGGLHDLSGHIDVVAEETSAFLQTL*
back to top

mRNA from alignment at Contig_84:85598..86451+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=854bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )
CGCTCACCGTGGCCACCATGTCCGACACTGGATCGGCCGGCAGTAATGAC ATCGCAAGTCTCGAGGGGCGCCTATTTCGGTACCGACCGGGGCTGGTGGC TTTTCAACACGGCCGGCACAATGATTGTCTCGTACTCCTTGGGGGCTTGA CAGATGGCCCTTTGAGCTTAAAGTACAGTACAGCTTTAGCAGCAGCGCTA GACGTGCAGAGTTGGTCACTGGTCCTGCCCACGCTATCGACGAGCTACCT CGGCTACGGCGTAGGCAGCCTGACGCAGGACTGCGATGAGCTGGTAGACC TGCTGTCCTGCCTGCCTGCTGAAGGCCGCATTGTCCTCATGGGCCACAGC ACAGGGTGCCAGATCAGCGTGCACTTCATGAAGCACGCGCCGCAGGCCGC GCGCAAACGCGTCGCCGGCGTCGTCCTACAGGCAGCAGTGAGCGATCGCG ACTACCTCGCAACGCTGCCGCAGACGCAGGAACTGGTGACGTTGGCGCGC ACGCTGCCGCTGACGGCACTCATGCCGCGCGAAGCCGACATCGCGCCCAT CACCGCCTACCGCTATCTCAGCCTGGCGGCGCGCGGCGGCGACGACGACA TGTTCTCCGATGACTTCAGCCAAGAAGAGCTGAAGGACAGGCTGGGGCAC ATGACCGTTCCGACGCTGCTGCTGGCGTCGCTGGCAGACGAATACGTGCC GGCAGGCGTGGACGTTAGTGCACTGGTGGAGCGCATTGCGGGCGCCATGC CTGGATGCCGGAAGTGCGTGCGTGTGGCGGGAGGGCTGCATGACTTGAGC GGGCACATCGACGTTGTGGCGGAGGAGACTTCAGCTTTTCTGCAGACATT ATGA
back to top

Coding sequence (CDS) from alignment at Contig_84:85598..86451+

>mRNA_12095 ID=mRNA_12095|Name=jgi.p|Trimin1|336541|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=837bp|location=Sequence derived from alignment at Contig_84:85598..86451+ (Tribonema minus UTEX_B_3156 )
ATGTCCGACACTGGATCGGCCGGCAGTAATGACATCGCAAGTCTCGAGGG
GCGCCTATTTCGGTACCGACCGGGGCTGGTGGCTTTTCAACACGGCCGGC
ACAATGATTGTCTCGTACTCCTTGGGGGCTTGACAGATGGCCCTTTGAGC
TTAAAGTACAGTACAGCTTTAGCAGCAGCGCTAGACGTGCAGAGTTGGTC
ACTGGTCCTGCCCACGCTATCGACGAGCTACCTCGGCTACGGCGTAGGCA
GCCTGACGCAGGACTGCGATGAGCTGGTAGACCTGCTGTCCTGCCTGCCT
GCTGAAGGCCGCATTGTCCTCATGGGCCACAGCACAGGGTGCCAGATCAG
CGTGCACTTCATGAAGCACGCGCCGCAGGCCGCGCGCAAACGCGTCGCCG
GCGTCGTCCTACAGGCAGCAGTGAGCGATCGCGACTACCTCGCAACGCTG
CCGCAGACGCAGGAACTGGTGACGTTGGCGCGCACGCTGCCGCTGACGGC
ACTCATGCCGCGCGAAGCCGACATCGCGCCCATCACCGCCTACCGCTATC
TCAGCCTGGCGGCGCGCGGCGGCGACGACGACATGTTCTCCGATGACTTC
AGCCAAGAAGAGCTGAAGGACAGGCTGGGGCACATGACCGTTCCGACGCT
GCTGCTGGCGTCGCTGGCAGACGAATACGTGCCGGCAGGCGTGGACGTTA
GTGCACTGGTGGAGCGCATTGCGGGCGCCATGCCTGGATGCCGGAAGTGC
GTGCGTGTGGCGGGAGGGCTGCATGACTTGAGCGGGCACATCGACGTTGT
GGCGGAGGAGACTTCAGCTTTTCTGCAGACATTATGA
back to top