mRNA_11953 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171554
Unique NamemRNA_11953
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A836C7Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q5_9STRA)

HSP 1 Score: 211 bits (537), Expect = 3.870e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 QLASGAVEALESAAVAVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            QLASGAVEALESAAVAVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW
Sbjct:    1 QLASGAVEALESAAVAVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 110
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A6V1QUF6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QUF6_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 9.610e-19
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   46 AVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            AV D  A   +A+N   QG  +    A+S K I+   YNP+TGQ E     SK QKRKHQIN LA  AA REL+++++RG G LTKAQT AKYGW
Sbjct:  106 AVTDVAAAPVDAYNPLRQGPSNQ---AQSVK-IKAGFYNPSTGQVEATDKPSKLQKRKHQINQLAFNAAERELELLDRRGQGMLTKAQTQAKYGW 196
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: D8LC39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC39_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.630e-16
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:  109 STVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            +T A  + +K I    Y+P+TG+T   +  +  QKRKHQIN LA QAA+ E D+ME+ GA  LTKAQTHAKYGW
Sbjct:  206 TTAAMNQEQKHIESSVYDPSTGKTVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 279
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A7S2WVM7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVM7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.050e-16
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   61 QARDPNAFNQFAQGAVSTVAGAES----------------------EKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            +ARD +   Q A G    +AG  +                      E  + G  YN ++G+T+  +  +K Q+RKHQINSLA +AA REL++MEK+G    TKAQT AKYGW
Sbjct:    7 RARDKDIERQIAMGNFDVIAGQTAVVYQPDTSSWNPHRNGVQEQAREVHVGGLSYNASSGETDMTLKPNKTQRRKHQINSLAFEAAERELELMEKKGNSMKTKAQTQAKYGW 118
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A6H5JA78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA78_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.270e-16
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 LASGAVEALESAAVAVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            LA G + AL S  + V+D Q +  N +N   +   +T A  + +K I    Y+P+TG+T   +  +  QKRKHQIN LA QAA+ E D+ME+ GA  LTKAQTHAKYGW
Sbjct:  381 LARGDLGALGSE-MPVMDLQ-QGTNEYNPL-RTKPTTAAMNQEQKHIESSVYDPSTGKTVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 486
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: F0Y8P4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8P4_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 9.640e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  133 EKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            E  I  Q YN  TG T T   A+K Q+RKHQINSLA+ AA REL++++K+G    TK +T+A+YGW
Sbjct:  257 EVSIAAQFYNTKTGATTTSTKATKTQRRKHQINSLAISAAERELELLDKKGKSNKTKHETNARYGW 322
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A7S3K0Y3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0Y3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.010e-12
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  106 VSTVAGAESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            ++ V+   SE ++    Y+P TG   T    SK Q+R+HQIN+LAV AA REL ++E+      TKAQTHAKYGW
Sbjct:  226 LAAVSNYTSEIKVATPFYDPRTGSNITTYRPSKLQRRRHQINALAVTAAERELQLLERNNHSLKTKAQTHAKYGW 300
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: W7TM18_9STRA (Mitotic checkpoint protein PRCC n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM18_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.060e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  157 YNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            Y+  TG+T T   AS+  KR+HQIN+LA+QAA RE D++E +     +KAQT  KYGW
Sbjct:  447 YDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: B9SNY8_RICCO (Uncharacterized protein n=4 Tax=Ricinus communis TaxID=3988 RepID=B9SNY8_RICCO)

HSP 1 Score: 62.8 bits (151), Expect = 3.250e-9
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  127 ESEKEIRGQRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            E + ++ G  + P+     T    SK  KRKHQI+SL      +E+++ E+R  GFLTKAQTHAKYGW
Sbjct:  296 EDQVKLTGIAFGPSYQPASTKGKPSKLHKRKHQISSLYFDMKQKEMELAERRAKGFLTKAQTHAKYGW 363
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BLAST of jgi.p|Trimin1|171554 vs. uniprot
Match: A0A6L2P959_TANCI (Uncharacterized protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P959_TANCI)

HSP 1 Score: 62.4 bits (150), Expect = 4.940e-9
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   73 PNAFNQFAQGAVSTVAGAESEKEIRGQRYNPATGQTETIVGA-SKGQKRKHQINSLAVQAAARELDIMEKRGAGFLTKAQTHAKYGW 330
            P A  + +Q  +      E + +  G  + PA   T +  G  +K  KRKHQI SL     ++E+++ E+R  GFLTKA+THAKYGW
Sbjct:  310 PTAVIEVSQDELMKNRPREDQVKATGIAFGPAYQPTSSTKGKPTKLHKRKHQIGSLYFDMRSKEMELAERRSKGFLTKAETHAKYGW 396
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7Q5_9STRA3.870e-69100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1QUF6_HETAK9.610e-1952.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LC39_ECTSI4.630e-1654.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WVM7_9STRA6.050e-1639.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JA78_9PHAE8.270e-1646.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y8P4_AURAN9.640e-1353.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3K0Y3_9STRA3.010e-1248.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TM18_9STRA4.060e-1051.72Mitotic checkpoint protein PRCC n=2 Tax=Monodopsid... [more]
B9SNY8_RICCO3.250e-945.59Uncharacterized protein n=4 Tax=Ricinus communis T... [more]
A0A6L2P959_TANCI4.940e-939.08Uncharacterized protein n=1 Tax=Tanacetum cinerari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_83contigContig_83:192951..193283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171554|e_gw1.83.22.1
DescriptionMitotic checkpoint regulator, MAD2B-interacting
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2BSAN@1|root,2S1Y7@2759|Eukaryota
Evalue1.58e-13
Seed ortholog44056.XP_009036672.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProline-rich protein PRCC
Ec32 orthologEc-20_004340.1
TranscriptId171876
TrackFilteredModels1
ProteinId171554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171554gene_11953Tribonema minus UTEX_B_3156 geneContig_83 192951..193283 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11953_1exon_11953_1Tribonema minus UTEX_B_3156 exonContig_83 192951..193283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11953CDS_11953Tribonema minus UTEX_B_3156 CDSContig_83 192951..193283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171554Trimin1|171554|e_gw1.83.22.1Tribonema minus UTEX_B_3156 polypeptideContig_83 192951..193283 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11953 ID=mRNA_11953|Name=jgi.p|Trimin1|171554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_83:192951..193283- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTTGGCGAGCGGGGCTGTTGAGGCGTTGGAGTCAGCAGCGGTAGCAGT
TGTGGATTACCAAGCGCGTGACCCTAATGCTTTCAATCAGTTTGCGCAGG
GGGCAGTGTCCACCGTTGCTGGCGCTGAGTCGGAGAAAGAGATCCGAGGC
CAACGCTACAATCCCGCAACGGGCCAGACAGAGACTATTGTGGGGGCCAG
CAAGGGCCAGAAGCGCAAGCACCAGATCAACTCCCTTGCAGTACAGGCTG
CTGCGCGTGAGCTGGATATCATGGAGAAACGAGGTGCAGGGTTCCTGACA
AAAGCACAGACGCATGCCAAGTATGGCTGGTAG
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protein sequence of jgi.p|Trimin1|171554

>Trimin1|171554|e_gw1.83.22.1 ID=Trimin1|171554|e_gw1.83.22.1|Name=jgi.p|Trimin1|171554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
QLASGAVEALESAAVAVVDYQARDPNAFNQFAQGAVSTVAGAESEKEIRG
QRYNPATGQTETIVGASKGQKRKHQINSLAVQAAARELDIMEKRGAGFLT
KAQTHAKYGW*
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mRNA from alignment at Contig_83:192951..193283-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11953 ID=mRNA_11953|Name=jgi.p|Trimin1|171554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_83:192951..193283- (Tribonema minus UTEX_B_3156 )
CAGTTGGCGAGCGGGGCTGTTGAGGCGTTGGAGTCAGCAGCGGTAGCAGT
TGTGGATTACCAAGCGCGTGACCCTAATGCTTTCAATCAGTTTGCGCAGG
GGGCAGTGTCCACCGTTGCTGGCGCTGAGTCGGAGAAAGAGATCCGAGGC
CAACGCTACAATCCCGCAACGGGCCAGACAGAGACTATTGTGGGGGCCAG
CAAGGGCCAGAAGCGCAAGCACCAGATCAACTCCCTTGCAGTACAGGCTG
CTGCGCGTGAGCTGGATATCATGGAGAAACGAGGTGCAGGGTTCCTGACA
AAAGCACAGACGCATGCCAAGTATGGCTGGTAG
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Coding sequence (CDS) from alignment at Contig_83:192951..193283-

>mRNA_11953 ID=mRNA_11953|Name=jgi.p|Trimin1|171554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_83:192951..193283- (Tribonema minus UTEX_B_3156 )
CAGTTGGCGAGCGGGGCTGTTGAGGCGTTGGAGTCAGCAGCGGTAGCAGT
TGTGGATTACCAAGCGCGTGACCCTAATGCTTTCAATCAGTTTGCGCAGG
GGGCAGTGTCCACCGTTGCTGGCGCTGAGTCGGAGAAAGAGATCCGAGGC
CAACGCTACAATCCCGCAACGGGCCAGACAGAGACTATTGTGGGGGCCAG
CAAGGGCCAGAAGCGCAAGCACCAGATCAACTCCCTTGCAGTACAGGCTG
CTGCGCGTGAGCTGGATATCATGGAGAAACGAGGTGCAGGGTTCCTGACA
AAAGCACAGACGCATGCCAAGTATGGCTGGTAG
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