mRNA_10930 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|93713
Unique Name	mRNA_10930
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|93713 vs. uniprot
Match: A0A835YTB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB7_9STRA)

HSP 1 Score: 390 bits (1003), Expect = 3.550e-135
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1

Query:  100 MKCDGHSRWAAICVRLRVLAMGCAIMFVATAASLGGANDVMPAGGGYRRGLWTRGGGFFGDVASALGPAAAMIPGGEIMARAAGGVMDKITGATSGPGPTDEGRSDDSSAGSTSTSDTAQPEDNGKAVVARDRVGTIVTQQITQADSHIKTVRGSFNRRVDDISRLDDKIASLQKARGEACLEKGNLEALLEKLEKDKVAWYSPLVG 720
            MKCDGHSRWAAICVRLRVLAMGCAIMFVATAASLGGANDVMPAGGGYRRGLWTRGGGFFGDVASALGPAAAMIPGGEIMARAAGGVMDKITGATSGPGPTDEGRSDDSSAGSTSTSDTAQPEDNGKAVVARDRVGTIVTQQITQADSHIKTVRGSFNRRVDDISRLDDKIASLQKARGEACLEKGNLEALLEKLEKDKVAWYSPLVG
Sbjct:    1 MKCDGHSRWAAICVRLRVLAMGCAIMFVATAASLGGANDVMPAGGGYRRGLWTRGGGFFGDVASALGPAAAMIPGGEIMARAAGGVMDKITGATSGPGPTDEGRSDDSSAGSTSTSDTAQPEDNGKAVVARDRVGTIVTQQITQADSHIKTVRGSFNRRVDDISRLDDKIASLQKARGEACLEKGNLEALLEKLEKDKVAWYSPLVG 207

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|93713 vs. uniprot

BLAST of jgi.p|Trimin1|93713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YTB7_9STRA	3.550e-135	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_82	contig	Contig_82:38033..39931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|93713\|CE93712_68
Hectar predicted targeting category	signal peptide
TranscriptId	94035
Track	FilteredModels1
ProteinId	93713

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|93713	gene_10930	Tribonema minus UTEX_B_3156	gene	Contig_82 38033..39931 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|93713	Trimin1\|93713\|CE93712_68	Tribonema minus UTEX_B_3156	polypeptide	Contig_82 38572..39702 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10930_1	exon_10930_1	Tribonema minus UTEX_B_3156	exon	Contig_82 38033..38117 +
exon_10930_2	exon_10930_2	Tribonema minus UTEX_B_3156	exon	Contig_82 38558..38863 +
exon_10930_3	exon_10930_3	Tribonema minus UTEX_B_3156	exon	Contig_82 39371..39931 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10930	UTR5_10930	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_82 38033..38117 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10930	CDS_10930	Tribonema minus UTEX_B_3156	CDS	Contig_82 38572..38863 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10930	UTR3_10930	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_82 39703..39931 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_82:38033..39931+
coding sequence from alignment at Contig_82:38033..39931+

spliced messenger RNA

>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Trimin1|93713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=952bp|location=Sequence derived from alignment at Contig_82:38033..39931+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGACAGCATCCTGGTCAGTGAGAGCCGGCTGAAAACTGGGGCAACAAGG
CACATCGGCCTTCTTGGCTGAAACGGCAGGCGCGGCACGGCGCAACACAA
TGAAGTGCGATGGGCACAGCCGCTGGGCAGCAATTTGCGTCCGACTCCGC
GTCCTAGCGATGGGATGTGCCATTATGTTCGTGGCCACAGCGGCCAGTCT
CGGTGGTGCCAACGATGTGATGCCGGCAGGTGGCGGTTACCGTAGAGGAC
TCTGGACCCGAGGTGGTGGGTTCTTTGGAGACGTTGCGAGCGCACTGGGG
CCCGCTGCTGCCATGATACCTGGTGGGGAAATTATGGCGCGCGCAGCAGG
TGGCGTTATGGACAAAATTACTGGCGCCACGTCTGGGCCAGGTCCAACAG
ATGAAGGGCGTAGCGATGATTCCAGTGCCGGGTCTACTTCAACATCCGAC
ACGGCGCAGCCTGAAGACAACGGCAAGGCTGTTGTTGCACGCGACAGAGT
TGGCACCATTGTGACACAGCAGATCACACAGGCTGACAGCCACATCAAGA
CAGTGCGCGGCTCGTTCAATCGGCGAGTCGACGACATAAGCAGATTAGAT
GACAAGATTGCTTCTCTTCAGAAGGCAAGGGGTGAAGCTTGTTTGGAGAA
GGGTAACTTAGAAGCTTTGCTTGAGAAGCTTGAGAAGGACAAAGTTGCGT
GGTACAGCCCTCTTGTTGGGTGAGTGAGGTGGTGTACATCAACGCCATCA
CCATTGCATCAGCAAGCCAGCACAGCGTCAGCAGTGAGCAACACCTGCTC
CAGTAGCAGCTTGCGTTGGAGATGCGCCACCCCACATTTTGCATCTCAGA
GGCGCCCTAGACGCTTGCAGGCATATGACATAAGCACTGGTGACTTCACA
ACAGGCTGCAAGCACAAGAGTACATGCTTTGCAAAAATAACCAAGAATTT
AC

protein sequence of jgi.p|Trimin1|93713

>Trimin1|93713|CE93712_68 ID=Trimin1|93713|CE93712_68|Name=jgi.p|Trimin1|93713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
MKCDGHSRWAAICVRLRVLAMGCAIMFVATAASLGGANDVMPAGGGYRRG
LWTRGGGFFGDVASALGPAAAMIPGGEIMARAAGGVMDKITGATSGPGPT
DEGRSDDSSAGSTSTSDTAQPEDNGKAVVARDRVGTIVTQQITQADSHIK
TVRGSFNRRVDDISRLDDKIASLQKARGEACLEKGNLEALLEKLEKDKVA
WYSPLVG*

mRNA from alignment at Contig_82:38033..39931+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Trimin1|93713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1899bp|location=Sequence derived from alignment at Contig_82:38033..39931+ (Tribonema minus UTEX_B_3156 )
AGGACAGCATCCTGGTCAGTGAGAGCCGGCTGAAAACTGGGGCAACAAGG
CACATCGGCCTTCTTGGCTGAAACGGCAGGCGCGGGTACGTAGAGGTAGC
GCGGACGTAGCCAAAATATTTGCGCAGGAGATATATGCAATGAGGCCACG
GGCAGCCCCAGGCACGGCATGCGCCTTTGATCGCACGGTACCAGTTGCAC
GCCTTCTACCTATTTCCAAGCCCTCAGGCTAGCTCGCAATCTCATCACCA
TTTCGTAAGGCCACCGTGCGCTGCCAGCGACTAGCAATCTCCGCACGAGA
AGTTGTGTAGAGGCACGTGCACCTTCTGCTTGTTTCGGCTTGTCCTACGA
TCCTGGCTATCTCGGCAGCAGTCGCTCTCCTGACATTCTGTGCGCACACA
CTTGCAGCATTGGCCACGAAGCTCAGGCGGCAACGTCAGGCTTGACCCCG
AAAGCAGCACTTCTGTTTTGTCAGAGATGATCAACTCTGAAGTTCTCTTT
TCTCTTCTCGTGTACACGGACACAGCACGGCGCAACACAATGAAGTGCGA
TGGGCACAGCCGCTGGGCAGCAATTTGCGTCCGACTCCGCGTCCTAGCGA
TGGGATGTGCCATTATGTTCGTGGCCACAGCGGCCAGTCTCGGTGGTGCC
AACGATGTGATGCCGGCAGGTGGCGGTTACCGTAGAGGACTCTGGACCCG
AGGTGGTGGGTTCTTTGGAGACGTTGCGAGCGCACTGGGGCCCGCTGCTG
CCATGATACCTGGTGGGGAAATTATGGCGCGCGCAGCAGGTGGCGTTATG
GACAAAATTACTGGCGCCACGTCTGGGCCAGGTGTGCCGGGAATGCACTG
CATGTGTTGTGGCTGTTATGTGCACACTTGATCAGTGCCCCAACCCCAGG
AGATCCAACACTGCTATTTGGGAAGCCATTTGCCACCATGACCCACAACA
CTGATTGGCGGGACACTGGTACAATTATGGTAGGGCTACCGTTTTGCACA
TGATGCCAGGCTTGAAGTCTTAATTCTTGAATTGTATAGGACTTGTGCCT
CCGAAGGCGTCCCCGCACAGTTCCAAGCCCGTGATGGGGGCAACTTGAGG
CTAGCAGCTCTCTGGACCAAAGTGGCTGGATTTTTTGTTTGTTGGAGTCC
GAACCTCTGGACAGCCTACTTCAACTGGAAAGCGAATCGCTTAGTCGAGT
CACTTCACACTGATTACAAGCAATTATCCTGCACCTTAAGTGGATATATC
CTTAACAGCTTCTCAGATGGCTTCATTTTGTCACTCCTAGGTTCTACCTC
AACTCGTACATGGCGAACTGTCACCTGCCCTGATACAGGTCCAACAGATG
AAGGGCGTAGCGATGATTCCAGTGCCGGGTCTACTTCAACATCCGACACG
GCGCAGCCTGAAGACAACGGCAAGGCTGTTGTTGCACGCGACAGAGTTGG
CACCATTGTGACACAGCAGATCACACAGGCTGACAGCCACATCAAGACAG
TGCGCGGCTCGTTCAATCGGCGAGTCGACGACATAAGCAGATTAGATGAC
AAGATTGCTTCTCTTCAGAAGGCAAGGGGTGAAGCTTGTTTGGAGAAGGG
TAACTTAGAAGCTTTGCTTGAGAAGCTTGAGAAGGACAAAGTTGCGTGGT
ACAGCCCTCTTGTTGGGTGAGTGAGGTGGTGTACATCAACGCCATCACCA
TTGCATCAGCAAGCCAGCACAGCGTCAGCAGTGAGCAACACCTGCTCCAG
TAGCAGCTTGCGTTGGAGATGCGCCACCCCACATTTTGCATCTCAGAGGC
GCCCTAGACGCTTGCAGGCATATGACATAAGCACTGGTGACTTCACAACA
GGCTGCAAGCACAAGAGTACATGCTTTGCAAAAATAACCAAGAATTTAC

Coding sequence (CDS) from alignment at Contig_82:38033..39931+

>mRNA_10930 ID=mRNA_10930|Name=jgi.p|Trimin1|93713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_82:38033..39931+ (Tribonema minus UTEX_B_3156 )
ATGAAGTGCGATGGGCACAGCCGCTGGGCAGCAATTTGCGTCCGACTCCG
CGTCCTAGCGATGGGATGTGCCATTATGTTCGTGGCCACAGCGGCCAGTC
TCGGTGGTGCCAACGATGTGATGCCGGCAGGTGGCGGTTACCGTAGAGGA
CTCTGGACCCGAGGTGGTGGGTTCTTTGGAGACGTTGCGAGCGCACTGGG
GCCCGCTGCTGCCATGATACCTGGTGGGGAAATTATGGCGCGCGCAGCAG
GTGGCGTTATGGACAAAATTACTGGCGCCACGTCTGGGCCAGGTCCAACA
GATGAAGGGCGTAGCGATGATTCCAGTGCCGGGTCTACTTCAACATCCGA
CACGGCGCAGCCTGAAGACAACGGCAAGGCTGTTGTTGCACGCGACAGAG
TTGGCACCATTGTGACACAGCAGATCACACAGGCTGACAGCCACATCAAG
ACAGTGCGCGGCTCGTTCAATCGGCGAGTCGACGACATAAGCAGATTAGA
TGACAAGATTGCTTCTCTTCAGAAGGCAAGGGGTGAAGCTTGTTTGGAGA
AGGGTAACTTAGAAGCTTTGCTTGAGAAGCTTGAGAAGGACAAAGTTGCG
TGGTACAGCCCTCTTGTTGGGTGA