mRNA_9776 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Trimin1|336028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1572bp|location=Sequence derived from alignment at Contig_81:351149..355726- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAGGGAGACCGAGGGAGAGAGGCTCCGCCCTCCGCGCCATACCC
GTACGCAGACAGCAGCAGCGCCCCCTTCTACTACCCGCAGCAGCAGCAGA
CGCAGCAACAACACATGCCTGGTCTAGTGCAGCCCATTCAGCAGCAGCCG
CTGCAGCAGCCAGTGGCCCCACCATCATATTACCCTATGCAGATGCCTGC
ATATAGTCCGATGTTCATGCCCGGAGTTAGTCCTGCCGGCATGAGTCCCC
TCTTCAGCCCCAGCTTCTGGGCATCGCCAGCCAACCCTGCTGGTGCGGCT
CATTGGGCAGCAGCGGCAACCGCGACCCCATTCGGTTATGCGCAGCAGCA
GCAGCAGCCGAGCAACGCGTTGCATGCAGGCGTGCCTCCCCAGCCCGGCG
TCAAGCTTGACCGCCTCCTCGAGGGCAATCGCGAGCAAGTACAGAAGAGG
CAGAGCGCCCTCTTGAAGCTGCACACTATGGAAGATCAGCCGGGCAGCAG
CAGCAAGCAGCAAGACGTACGACAGGCAAGGGACGAGGGCGCCACATCGG
AAGTTGCTTCAGTCAACCCTCCGTCGCCCCACGGGGGCGAAGCAGATCGC
GAGGCCGAGCTACCCAAACCTCCTCACTTCATGCCGGAGCACATGGCGCA
GGAGCCGCTGCTGCCGCCGCCGCCGCAGGCGCCGATGTACCCCGGCCAGT
TCACTTACGTCACCTACGTCCCGGTGCCGCTGCCTCGCAAGCCGGCGGAG
AAGCGCGCCGTGGACGGCGCCGCCAAGCCGGCGGCGGCACGCGGCGCGCG
CCAGAAGCTCGACGAGCTCCAGCAGAGCATGCACCAGCTGCAGCAGGTGA
ACCACCGCCTGCGCACCGCCAACGACACGCTGCGCTCCCTGCTGAGCTCT
GGCGGCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCAG
AGGCGCGCAGCTCGGCGCGCTCTCCGCGCGCAACGCGCTGCTGCGCGGCG
CCATCCTGGAGCTGCAGAGCATGTACGCGGCGCGCGACTCCGCCTCGGAG
GAGCAGGTGGCAGCAGTGCTCAGCCGCTGCGACGCGATGCTCGGCGAGCA
GGGGGATCCCATGCCGGCGGGCAGACGCGCGGCGGCGGCGGCGGCGGCGG
CGGCGCAAGGGGGGATGGCCGACGCCAAATTCTGGCCCGTTCAGGGGGTC
GGCAAGACAGCGCCGCCGCTGCTGCTGCCATCTCACAGCGGTGGTGGCGG
CGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGCTGACAAAGGGGGCAGCGGCGGCAGAGGCTTCGGTAGTGGC
GGCAGCGGTTACAGCAAGAGCTTAGGTGGCGCCGTCAGTGTTGATAGCAC
TGGTTTTGGCCTCATCGGTTTTGGCGGCAGAAGCAGCGGTGGCGGCGGCG
GCAGCAGCGGCGCCCTCGGCAGCAGCGGCATAGCAGATCAGTTCAGCCGT
CACATCGGCGCAGGAATGGTGGATTGCCACAACGCCACAACAAGCTGCAG
TTACAAGCAGGATCTTCGATGA
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protein sequence of jgi.p|Trimin1|336028

>Trimin1|336028|MIX44791_4_16 ID=Trimin1|336028|MIX44791_4_16|Name=jgi.p|Trimin1|336028|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=524bp
MEQGDRGREAPPSAPYPYADSSSAPFYYPQQQQTQQQHMPGLVQPIQQQP
LQQPVAPPSYYPMQMPAYSPMFMPGVSPAGMSPLFSPSFWASPANPAGAA
HWAAAATATPFGYAQQQQQPSNALHAGVPPQPGVKLDRLLEGNREQVQKR
QSALLKLHTMEDQPGSSSKQQDVRQARDEGATSEVASVNPPSPHGGEADR
EAELPKPPHFMPEHMAQEPLLPPPPQAPMYPGQFTYVTYVPVPLPRKPAE
KRAVDGAAKPAAARGARQKLDELQQSMHQLQQVNHRLRTANDTLRSLLSS
GGSGGGGGGGSGGGGGRGAQLGALSARNALLRGAILELQSMYAARDSASE
EQVAAVLSRCDAMLGEQGDPMPAGRRAAAAAAAAAQGGMADAKFWPVQGV
GKTAPPLLLPSHSGGGGGGSGGGGGGGGGGGGGGGGADKGGSGGRGFGSG
GSGYSKSLGGAVSVDSTGFGLIGFGGRSSGGGGGSSGALGSSGIADQFSR
HIGAGMVDCHNATTSCSYKQDLR*
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mRNA from alignment at Contig_81:351149..355726-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Trimin1|336028|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4578bp|location=Sequence derived from alignment at Contig_81:351149..355726- (Tribonema minus UTEX_B_3156 )
ATGGAGCAGGGAGACCGAGGGAGAGAGGCTCCGCCCTCCGCGCCATACCC GTACGCAGACAGCAGCAGCGCCCCCTTCTACTACCCGCAGCAGCAGCAGA CGCAGCAACAACACATGCCTGGTCTAGTGCAGCCCATTCAGCAGCAGCCG CTGCAGCAGCCAGTGGCCCCACCATCATATTACCCTATGCAGATGCCTGC ATATAGTCCGATGTTCATGCCCGGAGTTAGTCCTGCCGGCATGAGTCCCC TCTTCAGCCCCAGCTTCTGGGCATCGCCAGCCAACCCTGCTGGTGCGGCT CATTGGGCAGCAGCGGCAACCGCGACCCCATTCGGTTATGCGCAGCAGCA GCAGCAGCCGAGCAACGCGTTGCATGCAGGCGTGCCTCCCCAGCCCGGCG TCAAGCTTGACCGCCTCCTCGAGGGCAATCGCGAGCAAGTACAGAAGAGG CAGAGCGCCCTCTTGAAGCTGCACACTATGGAAGATCAGCCGGGCAGCAG CAGCAAGCAGCAAGACGTACGACAGGCAAGGGACGAGGGCGCCACATCGG AAGTTGCTTCAGTCAACCCTCCGTCGCCCCACGGGGGCGAAGCAGATCGC GAGGCCGGTGCCCATGCCAGGCGTCCGCGACAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGATGGCGGCGCCAGTGGCGCGGCCAGCGCAGCTCAGTCCCGAC CACGAGGCGAGCGCGCGGAATCCCGTGCCGCCAGTGTCGCCCGAAGGCTC CAGTGCACAGGGCGCCTACGGCCCTTCCTCCCCCCACTCGCAGCCCCCTC CAGAGCTACCCAAACCTCCTCACTTCATGCCGGAGCACATGGCGCAGGAG CCGCTGCTGCCGCCGCCGCCGCAGGCGCCGATGTACCCCGGCCAGTTCAC TTACGTCACCTACGTCCCGGTGCCGCTGCCTGTGAGCTCATCGCCGGCGG CAGCATTCAACGCGTACAGCTCAAGCGGGGACGCCACCCCAGTGGGCGCT GCTCCAGAGGCCTTTCAAGGGCACCCCATGATGCTCGCGCCTCCGCAGCC GCACCCCTACGCGATGGTCGACGGCGGCATGGGAATGGGGCCTGGAATGA GCATGCCGCTTGCGGGCGGCGCTTCCGCGGTGGCCGCCACGGGCACGCCG TGGCAGTTACAGCAGTTACAGCAGCTGCCGCCGCACCAGCTGCAGCAGCA GCTCCAGCAGCAGCAGCAGCTCCAGCAGCAGCAGCTGCTGCAGCAGCAGC TGATGCAGCCTCAGCAGTTCCTGCCGCCGCACCAGATGCAGCAGATGCAA CAGCAGCAGCAGCAGCAGCATCAGCAGCTACTTCGAAATCCGCAGCAACA TCAGCTCCACCAGCAGCAGCAGCGCCTGCGACAAGAGTCCCAGAAGCGGC AGCAGCAGCGGTGGGGAATGCGCAGCAGCGGCAGCGACGGCGGCGGCGGC GGCGGCGGCGGGGGCGCTGCGGACGGCCTGGCAGCGGGTGCCGCGCCCTT TGCGGACGATGGCGGCAGCAGGGGTCGGCAGTCCAGCGGTCATCTGCTGA GCTGGGTCACCGAGCAATGCGCGCTGCACAAGCGTCAGGACAGCAGCTCC GGCGCAAGATCGAGCGCTGCAGACAAAGCGAGAGGCAGAGGCAATTCGCA GCAGCCGCACGCTGCCGCACCACGTGAGCCCGGCACCAGCAGCGGCGGCG GCGGTGGTAGCGGCGGCAGCGGCAGCAGCGATGGCCACGGCGGCGGCGGC GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCAGCACCAG CGGCGGCGGCAGCAGTGGCGGCGGCAGCGGCAGCGGCAGTGTGCCAGATC CTCTCACACAGCATCGATCTGTGTTTGATGCCTATGAGCAGCAGCAGTAC CCGCATGGCCAGCGTTTGCTACAGCAGCAGGACAAGCAGCAGCTGCAGCG GCAGTGGCAGCGCAGCCCTGCTCCAATGAGCTCGCCGCCGCCGCCGCCGC TGCTGCCGCACTCGCAAGTGGGCCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAGCAGCCGCAGCAGCA GCAGCGGCAGCAGCCGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAG CAGCAGCGCAGCAGCGCGCCGCTTCCCGACCACTCCTCTGCGCAGCCAGC AGCGGCTCAGCAGGGGCGGGCCGGCAACGCGGACATGGCGCCGCCGCCGC AGCCACCACCAGCTGCTGCAGGCAAAGCCAGCAGCGCCGCCGCCGCCGCC GTCGCTGCCGCCGCGCAGCCGCCCGCCCCCGCGCGCAAGCGCAAGCCGGC GGAGAAGCGCGCCGTGGACGGCGCCGCCAAGCCGGCGGCGGCACGCGGCG CGCGCCAGAAGCTCGACGAGCTCCAGCAGAGCATGCACCAGCTGCAGCAG GTGAACCACCGCCTGCGCACCGCCAACGACACGCTGCGCTCCCTGCTGAG CTCTGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCG GCAGAGGCGCGCAGCTCGGCGCGCTCTCCGCGCGCAACGCGCTGCTGCGC GGCGCCATCCTGGAGCTGCAGAGCATGTACGCGGCGCGCGACTCCGCCTC GGAGGAGCAGGTGGCAGCAGTGCTCAGCCGCTGCGACGCGATGCTCGGCG AGCAGGGGGATCCCATGCCGGCGGGCAGACGCGCGGCGGCGGCGGCGGCG GCGGCGGCGCAAGGGGGGATGGCCGACGCCAAATTCTGGCCCGTTCAGGG GGTCGGCAAGACAGCGCCGCCGCTGCTGCTGCCATCTCACAGCGGTGGTG GCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC GGCGGCGGCGGCGCTGACAAAGGGGGCAGCGGCGGCAGAGGCTTCGGTAG TGGCGGCAGCGGTTACAGCAAGAGCTTAGGTGGCGCCGTCAGTGTTGATA GCACTGGTTTTGGCCTCATCGGTTTTGGCGGCAGAAGCAGCGGTGGCGGC GGCGGCAGCAGCGGCGCCCTCGGCAGCAGCGGCATAGCAGATCAGTTCAG CCGTCACATCGGCGCAGGTCACAAGCGCAAGGGCAGCGGCGGCGGCGGCG GCAGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGC GGCAGCGGCGGCGGCATGCAGCACACCATGCAGGACTCCGCACACACGCT GCTCGCGCTCGCCCACAGCCCGCGACAGACGCTCGGCGGCGCTGCGCTTG AGGCGCCCGCATTTGACGGCAGCCGCAGCGGCGTTTTAGTGGTGAGGGAT GTCACGGAACAGCAGACTGGCCGCGGCGTATCGGGCCTCGGTATCGGCAG CCGCGGCGGCGCCGATATTGATGCCGGCAGTGGCGGCGGCGGCGGCGGCG GCGGCGGCGGCGGCGGCGGCGGCCGTGGCGGCGGCGGCGGCGGCTATGAC ACAAGCGGTTACAGTCTCGTGTCGGGTGTCAGCAGGCGCCCAGGCGGCGC GTCGTACGGATAGGTAGACTTACAGGCTAGTGCAAAGAGAGCGAGAGAGC GAAGAGCGTGCGTCGCGGCGGCACCGCTTTTGTGTGTCGGCCTTTTGAAC GGGAGCACAGAGTCATCGATGCGTCACGGGGGGGGGGGGGGGGGGGCAAT GGCTGCCCCCCCCGCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTCGCA CACATGTTCCTGTGTGGGGGAGAGATGAATTTTAGTGTTTGGGCTCCGTC ACCAACCCCCGCTGCGCCTGACCCAGTGTATCCCGTGCAGTTGTGGGGCT TGTAAATATGATATCTTGAGTGTTCCATGTGGTATATGTATCGGGCTACA GATCATGGGGTGGCACCCCCCCTCGCTCTATACAACTTGAGCAGCGCTTC CGCGCCCTCAGCACCATCAGCAGTTTCAGCGCAGGCGTGTGTGTGTCCGC TGCCTGCTGCCCAAGATATTTCACATGTTGCAAATGCGTCGGAGCACGCT GTGCGCATTGCTCAGCACTTGTGGTAGCTTCGCGAGGGCATCAGCTCGTC GGCAAGCCTTTCTCAAGTGTTCATGCTGGCACTGTTCAATACGGGCAGTT CTTACTTGTATGCATTGTCATACTGAGGTATGTATTGGAGACAAACTGCC TCTTGCAAAGCTTGTCAGGTCTGCTCTGTGCTGTGGTTGTGTCAAGTTGT GAGTCGTTTACATGAGCTTGCATGCAATCATTTCTCGAAGTATTTGCACA TTGCTGACTACCACCAACCAGGCAAGTAGGATGCTCTTGCTACATCGGAC CTGCACACTTTGTACCCACGCAGTGACGCAGAATGAGCCGCTACTTCCAT GCATGTTTTACGCCTGTAGGAATGGTGGATTGCCACAACGCCACAACAAG CTGCAGTTACAAGCAGGATCTTCGATGA
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Coding sequence (CDS) from alignment at Contig_81:351149..355726-

>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Trimin1|336028|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1572bp|location=Sequence derived from alignment at Contig_81:351149..355726- (Tribonema minus UTEX_B_3156 )
ATGGAGCAGGGAGACCGAGGGAGAGAGGCTCCGCCCTCCGCGCCATACCC
GTACGCAGACAGCAGCAGCGCCCCCTTCTACTACCCGCAGCAGCAGCAGA
CGCAGCAACAACACATGCCTGGTCTAGTGCAGCCCATTCAGCAGCAGCCG
CTGCAGCAGCCAGTGGCCCCACCATCATATTACCCTATGCAGATGCCTGC
ATATAGTCCGATGTTCATGCCCGGAGTTAGTCCTGCCGGCATGAGTCCCC
TCTTCAGCCCCAGCTTCTGGGCATCGCCAGCCAACCCTGCTGGTGCGGCT
CATTGGGCAGCAGCGGCAACCGCGACCCCATTCGGTTATGCGCAGCAGCA
GCAGCAGCCGAGCAACGCGTTGCATGCAGGCGTGCCTCCCCAGCCCGGCG
TCAAGCTTGACCGCCTCCTCGAGGGCAATCGCGAGCAAGTACAGAAGAGG
CAGAGCGCCCTCTTGAAGCTGCACACTATGGAAGATCAGCCGGGCAGCAG
CAGCAAGCAGCAAGACGTACGACAGGCAAGGGACGAGGGCGCCACATCGG
AAGTTGCTTCAGTCAACCCTCCGTCGCCCCACGGGGGCGAAGCAGATCGC
GAGGCCGAGCTACCCAAACCTCCTCACTTCATGCCGGAGCACATGGCGCA
GGAGCCGCTGCTGCCGCCGCCGCCGCAGGCGCCGATGTACCCCGGCCAGT
TCACTTACGTCACCTACGTCCCGGTGCCGCTGCCTCGCAAGCCGGCGGAG
AAGCGCGCCGTGGACGGCGCCGCCAAGCCGGCGGCGGCACGCGGCGCGCG
CCAGAAGCTCGACGAGCTCCAGCAGAGCATGCACCAGCTGCAGCAGGTGA
ACCACCGCCTGCGCACCGCCAACGACACGCTGCGCTCCCTGCTGAGCTCT
GGCGGCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCAG
AGGCGCGCAGCTCGGCGCGCTCTCCGCGCGCAACGCGCTGCTGCGCGGCG
CCATCCTGGAGCTGCAGAGCATGTACGCGGCGCGCGACTCCGCCTCGGAG
GAGCAGGTGGCAGCAGTGCTCAGCCGCTGCGACGCGATGCTCGGCGAGCA
GGGGGATCCCATGCCGGCGGGCAGACGCGCGGCGGCGGCGGCGGCGGCGG
CGGCGCAAGGGGGGATGGCCGACGCCAAATTCTGGCCCGTTCAGGGGGTC
GGCAAGACAGCGCCGCCGCTGCTGCTGCCATCTCACAGCGGTGGTGGCGG
CGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGCTGACAAAGGGGGCAGCGGCGGCAGAGGCTTCGGTAGTGGC
GGCAGCGGTTACAGCAAGAGCTTAGGTGGCGCCGTCAGTGTTGATAGCAC
TGGTTTTGGCCTCATCGGTTTTGGCGGCAGAAGCAGCGGTGGCGGCGGCG
GCAGCAGCGGCGCCCTCGGCAGCAGCGGCATAGCAGATCAGTTCAGCCGT
CACATCGGCGCAGGAATGGTGGATTGCCACAACGCCACAACAAGCTGCAG
TTACAAGCAGGATCTTCGATGA
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