mRNA_9784 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YJ41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ41_9STRA) HSP 1 Score: 289 bits (739), Expect = 4.760e-99 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
Query: 1 MVTHPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL 414
MVTHPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL
Sbjct: 1 MVTHPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL 138
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YTK3_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK3_9STRA) HSP 1 Score: 229 bits (585), Expect = 5.300e-70 Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 1
Query: 10 HPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIV--RRPDFRGTVGNSKPSPMPAHLAPAM--TEMLNYLAIDHERFFSALDSPL 414
HPPAP SPLKGVH+GIVYITCWGGGQLCTMR+TF +FG SMLANKYASDV ARN+ AAALD+DGC+VEDHNHECF KLVNVMRLRAIV RRP F GT+G++KPS MPAHLA AM TEMLNYLAIDHE+F SALDSP+
Sbjct: 456 HPPAPPSPLKGVHNGIVYITCWGGGQLCTMRETFKQFGRSMLANKYASDVWARNVRAAALDDDGCVVEDHNHECFQKLVNVMRLRAIVTVRRPGFSGTIGSAKPSHMPAHLALAMSVTEMLNYLAIDHEQFVSALDSPV 594
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YMH1_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH1_9STRA) HSP 1 Score: 220 bits (561), Expect = 4.030e-67 Identity = 104/132 (78.79%), Postives = 119/132 (90.15%), Query Frame = 1
Query: 19 APLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL 414
AP SPL+GVH+GIVY+ CWGGGQLCTMR+ F +FG SMLANKYASDV ARNI AAALDEDGCIVE+H+HECF KLVNVMRLRAIVRRP F GTVG+SKP+PMPAHLAPAMT+ML YL I+HE+ F+ALD+P+
Sbjct: 390 APPSPLRGVHNGIVYMACWGGGQLCTMREMFKQFGRSMLANKYASDVWARNIRAAALDEDGCIVENHHHECFQKLVNVMRLRAIVRRPAFSGTVGSSKPAPMPAHLAPAMTKMLEYLMINHEQCFNALDAPV 521
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YZL9_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL9_9STRA) HSP 1 Score: 206 bits (525), Expect = 1.850e-61 Identity = 101/137 (73.72%), Postives = 111/137 (81.02%), Query Frame = 1
Query: 7 THPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSM-LANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL 414
T PPA SPLKGVH GIVYITCWG GQLCTMR+TFT+ G LA KYASDV A NI +AALDEDGC++EDHN ECF KLVNVMRLRA+VRRPDF TVG+SKP+PMPAHLA AM ML YL ID E+FF LDSP+
Sbjct: 420 TDPPATPSPLKGVHHGIVYITCWGTGQLCTMRETFTQLGDETPLAKKYASDVWAANIESAALDEDGCVIEDHNAECFQKLVNVMRLRAMVRRPDFSSTVGSSKPAPMPAHLARAMASMLEYLMIDSEQFFGTLDSPV 556
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835Z1Y2_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y2_9STRA) HSP 1 Score: 193 bits (491), Expect = 1.950e-56 Identity = 92/134 (68.66%), Postives = 108/134 (80.60%), Query Frame = 1
Query: 13 PPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDSPL 414
PPAP + LKG+H+GIVYI C G GQLCTMR+TFT+FG + LANKYASDV I LDE+GC+ EDHN ECFHKL NVMRLR+IVRRPDF GT+G+SKP+PMPAHL MT ML YL ID E+FFS+L+SP+
Sbjct: 425 PPAPPTRLKGIHNGIVYIACRGTGQLCTMRETFTQFGATPLANKYASDVWG-GIVEVELDEEGCVFEDHNQECFHKLANVMRLRSIVRRPDFSGTIGSSKPAPMPAHLTATMTNMLEYLMIDSEQFFSSLNSPV 557
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835Z2V8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V8_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.190e-51 Identity = 87/123 (70.73%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 34 LKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSAL 402
L+GVH+GIVYI C G GQLCTMRDTFT+FG + LANKYASDV N+ LDE+GC+ EDHN ECF KLVNVMRLRAIVRR F GT+G+SKP+PMPAHLAP MT ML YL ID + FFS+L
Sbjct: 408 LRGVHNGIVYIACSGTGQLCTMRDTFTQFGDTPLANKYASDVWGGNVEVE-LDEEGCVFEDHNQECFDKLVNVMRLRAIVRRTGFSGTIGSSKPAPMPAHLAPTMTNMLEYLMIDSKHFFSSL 529
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A836CG89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG89_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.400e-24 Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 187 LDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAIDHERFFSALDS 408
LD++GC+ EDH ECF KLVNV+RLRAIVR+P F G V KP+PMPAHL P M ML L ID + FF+ LDS
Sbjct: 32 LDDEGCVFEDHKQECFRKLVNVIRLRAIVRKPGFCGWVRTRKPAPMPAHLVPVMATMLENLMIDSKEFFNTLDS 105
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YWT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.660e-16 Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 55 IVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAID 378
I + G G L T R TF +F S LA+KYAS+ ++SA A D++G I EDH+ +CF +LVN+MRLRA+VRR D V ++ P P P M ML+YL ID
Sbjct: 266 IAFTDVLGHGALSTRRATFLQFRASPLASKYASERWRDSLSAEARDDEGRIYEDHDGDCFRRLVNIMRLRALVRRGDCPSGVLDAC-CPKPEATTP-MKSMLHYLMID 371
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Match: A0A835YNW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.470e-14 Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 55 IVYITCWGGGQLCTMRDTFTEFGGSMLANKYASDVRARNISAAALDEDGCIVEDHNHECFHKLVNVMRLRAIVRRPDFRGTVGNSKPSPMPAHLAPAMTEMLNYLAID 378
I + G G L T R TF +F S LA KYA++ ++SA A D++G I EDH+ +CF +LVN+MRLRA+VRR D ++ P P AP M ML YL ++
Sbjct: 333 IAFTDVLGHGALSTRRATFLQFPASPLAAKYAAERWRESLSAEARDDEGRIYEDHDGDCFRRLVNIMRLRALVRRGDCPSGALDAC-CPKPEATAP-MRAMLQYLMVE 438 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171285 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9784 ID=mRNA_9784|Name=jgi.p|Trimin1|171285|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_81:417934..418350+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGACCCACCCCCCTGCGCCCCTCAGCCCGCTCAAAGGTGTCCATGAback to top protein sequence of jgi.p|Trimin1|171285 >Trimin1|171285|e_gw1.81.73.1 ID=Trimin1|171285|e_gw1.81.73.1|Name=jgi.p|Trimin1|171285|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp MVTHPPAPLSPLKGVHDGIVYITCWGGGQLCTMRDTFTEFGGSMLANKYAback to top mRNA from alignment at Contig_81:417934..418350+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9784 ID=mRNA_9784|Name=jgi.p|Trimin1|171285|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_81:417934..418350+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_81:417934..418350+ >mRNA_9784 ID=mRNA_9784|Name=jgi.p|Trimin1|171285|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_81:417934..418350+ (Tribonema minus UTEX_B_3156 )back to top |