mRNA_9783 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|171266
Unique Name	mRNA_9783
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YIU4_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU4_9STRA)

HSP 1 Score: 570 bits (1470), Expect = 3.960e-206
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1

Query:    1 MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSSGER 810
            MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSSGER
Sbjct:    1 MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSSGER 270

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YTK3_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK3_9STRA)

HSP 1 Score: 354 bits (909), Expect = 3.480e-116
Identity = 178/260 (68.46%), Postives = 200/260 (76.92%), Query Frame = 1

Query:   22 EQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMP--HHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTS--SGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLV 789
            E+  NP E+L +NVGGAKL +KRSA+ +VE SKLA MF+GRWDHVLPRDHSGRIFLDLDINWF PITN LSELS GA A    LP+MQL DDDR+G+QAC ELFGLCD++  QG+A +P   H+TSVA LGQESGLEIG  APWQLLY SSV+GA AH+FHRLCD KPNTV LAVD+KGNVFGG A V W S  S  WQ D A FLF +GS STA+QRYS   ++             IQSAVFHHSSYGPVFGNGYDLV
Sbjct:   44 EKAYNPPEVLTLNVGGAKLLLKRSAMAYVEDSKLAWMFNGRWDHVLPRDHSGRIFLDLDINWFRPITNFLSELSQGAEAGVAYLPIMQLMDDDRVGVQACMELFGLCDIVSAQGIASVPLTQHVTSVAHLGQESGLEIGWSAPWQLLYQSSVNGAIAHDFHRLCDGKPNTVSLAVDEKGNVFGGLATVAWASHSSRSWQPDRAAFLFYEGSGSTAMQRYSQARNN-------------IQSAVFHHSSYGPVFGNGYDLV 290

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YMH1_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH1_9STRA)

HSP 1 Score: 349 bits (896), Expect = 3.760e-115
Identity = 170/255 (66.67%), Postives = 194/255 (76.08%), Query Frame = 1

Query:   25 QDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLV 789
            QD  P+E+L +N+GGAKL +KRSALTH+E SKLA MFSGRWDHVLPRDH GRIFLDLDINWF PIT+ LSELS  AAADE  LP+MQ SDDDRLGLQAC ELFGLCD IP QG+AGMP HI SVARLGQESGL+IG  APWQLLY +SV+GA A EFH  CD KP+T+CLA+D++GN+ GGF  VPW SSG ++RDPA FLF +G ES A QRYS   +SP +AV              H+S YGP FG G D  
Sbjct:    3 QDYKPTEVLTLNIGGAKLRLKRSALTHIEDSKLAWMFSGRWDHVLPRDHLGRIFLDLDINWFRPITDFLSELSQSAAADEAYLPIMQRSDDDRLGLQACVELFGLCDSIPAQGLAGMPQHIASVARLGQESGLKIGWSAPWQLLYQASVNGAKAREFHSWCDGKPHTLCLAMDNEGNILGGFTSVPWESSGTYKRDPAAFLFFKGVESPATQRYSQTGNSPQWAV-------------IHNSGYGPAFGGGRDFA 244

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YZL9_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL9_9STRA)

HSP 1 Score: 330 bits (846), Expect = 3.660e-107
Identity = 165/277 (59.57%), Postives = 199/277 (71.84%), Query Frame = 1

Query:    1 MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPT----------QGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSS 801
            MFFIV V Q+  P  +LI+NVGGAKL VKRSALTHV+ SKLA MFSGRWDHVLPR+HSGR FLDLD+ WF PIT+ LS+LS GAAADE++LPV QLSDDD+LG+QACAE+FGLC ++            Q +A +  H+ SVA LGQES   +G  APWQLLY SSV GATA EFHRLCD KP+T+CLA+D++GN+FGG+  V WTSS GWQ DPA FLF +G  S A+Q YS + +SP +++ H             HSS  P FG G+DL   SS
Sbjct:    1 MFFIVAVLQEYQPPSVLILNVGGAKLRVKRSALTHVDDSKLAWMFSGRWDHVLPRNHSGRKFLDLDVKWFSPITDFLSKLSSGAAADEVRLPVSQLSDDDKLGVQACAEMFGLCHILARELNLRPLLVQQALANLAQHVASVAHLGQESKRVVGWSAPWQLLYQSSVHGATAQEFHRLCDCKPHTICLAIDNEGNMFGGYTSVAWTSSDGWQADPAAFLFYEGRGSAALQCYSQKGTSPEHSIRH-------------HSSLWPTFGGGHDLRFKSS 264

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835Z1Y2_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y2_9STRA)

HSP 1 Score: 322 bits (826), Expect = 3.930e-104
Identity = 168/274 (61.31%), Postives = 191/274 (69.71%), Query Frame = 1

Query:   19 VEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPT----------QGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSS-GGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSSGE 807
            V QD  P  +L +NVGGAKL VKRSALT  + SKLA MFSGRWDHVLPRDHSGRIFLDLD+ WF PIT  LSELS GAAAD++ LP+ QLSDDD+LG+QACAE+FGLC ++            Q +A +  HI SVARLG+E+ L+IG  APWQLLY SS  GAT  EFHRLC  KPNT+CLA DDKGNVFGGF  V  TSS G WQ DPA FLFC+GS STA+QRY    +SP             Q AV H SS+GP+FG G DL    S E
Sbjct:   11 VLQDYKPPSLLTLNVGGAKLLVKRSALTLFDDSKLAWMFSGRWDHVLPRDHSGRIFLDLDVKWFSPITEYLSELSRGAAADDVHLPLTQLSDDDKLGVQACAEMFGLCPILARELDPRLFLARQALANVTQHIASVARLGEETKLKIGWSAPWQLLYQSSAHGATPQEFHRLCAHKPNTICLATDDKGNVFGGFTTVARTSSPGSWQPDPAAFLFCKGSNSTAMQRYCQTGTSP-------------QHAVLHKSSHGPIFGVGNDLQFAFSSE 271

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835Z2V8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V8_9STRA)

HSP 1 Score: 308 bits (788), Expect = 8.730e-99
Identity = 154/243 (63.37%), Postives = 176/243 (72.43%), Query Frame = 1

Query:   19 VEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPT--------QGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGGWQRDPAVFLFCQGS--ESTAVQRYSPRVSSPYYAVCHDPGW 717
            V Q   P  +LI+NVGGAKL VKRSALTHV+ SKLA MFSGRWDHVLPRDHSGRIFLDLD+ WF PIT  LS+LS G AAD + LP+  LSDDD+LGL+ACAEL+GL D+ P         Q +  M  H+ SVARLGQ SGL IG  APWQLLY SSV GATA EFHRLCD KPNTVCLAVDD+G+VFGGF  V W +   +Q DPA FLFCQ    +S+  QRYSP+   P +A+ H   W
Sbjct:    5 VVQHYKPPALLILNVGGAKLRVKRSALTHVKDSKLAWMFSGRWDHVLPRDHSGRIFLDLDVKWFSPITQYLSKLSRGVAADAVHLPITLLSDDDKLGLRACAELYGLGDIFPKATLYSIAEQALVDMAQHVASVARLGQNSGLMIGWSAPWQLLYRSSVHGATAQEFHRLCDGKPNTVCLAVDDRGHVFGGFTSVGWATGTSYQLDPAAFLFCQPDRGDSSVKQRYSPKGFFPQFALYHSDDW 247

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835Z9G2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G2_9STRA)

HSP 1 Score: 286 bits (733), Expect = 4.280e-92
Identity = 148/263 (56.27%), Postives = 174/263 (66.16%), Query Frame = 1

Query:    1 MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQLLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTS-SGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDL 786
            M +   V QD  P  +L++NVGGAKL VKRSALTHV+ SKLA MF+GRWDH LPRDHSG IFLD+D+ WF PI   LSELS G AA+E  LP+MQLSDDDRLG +AC ELFGL D++P Q        + SVA  G ESGL +   A WQLL  SS   AT  EFHRL   +PNTVCLA+DD+GNVFGGF    W + SG ++ DPA FLFC+ S+S   + YS   S P  AVCH             HSS GP+FG G+DL
Sbjct:   55 MHYTATVLQDYEPPSLLVLNVGGAKLRVKRSALTHVKDSKLAWMFNGRWDHWLPRDHSGHIFLDVDVKWFSPIAEYLSELSRGTAANEAYLPIMQLSDDDRLGFRACVELFGLRDIMPKQAFDSQAQVLASVACFGLESGLNLAWSALWQLLCQSSAHDATTQEFHRLYYGRPNTVCLAIDDEGNVFGGFTSEAWIAGSGTYKPDPAAFLFCKTSDSPTTRCYSQTGSYPQCAVCH-------------HSSVGPLFGGGHDL 304

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YWT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.540e-33
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 1

Query:   22 EQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQG 363
             +D  P E+L +NVGGA L V+RSA+TH   S LA MFSGRWDHVLP D  GR FLDLD++WF PI   L  LS G    E+ +PV  L  DDRLGL+ACAELFGL + +  +G
Sbjct:   53 SKDYTPPELLTLNVGGAALTVRRSAVTHFPDSPLAWMFSGRWDHVLPHDSKGRPFLDLDVSWFKPIAGALHALSRGTEPHEVVVPVAHLVHDDRLGLRACAELFGLTEALRFEG 166

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A835YNW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.140e-30
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 1

Query:   22 EQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQG 363
             +D  P E+L +NVGGA L V+RSALTH   S LA MFSG WDHVLPRD   R FLDLD++WF PI   L  LS G    E+ +PV  L+ DDRLGL+ACAEL GL + +  +G
Sbjct:   54 SEDYAPPELLTLNVGGAALTVRRSALTHFPDSPLAWMFSGCWDHVLPRDTKHRPFLDLDVSWFKPIVGALHALSRGTEPHEVVVPVAHLAHDDRLGLRACAELLGLTEALRFEG 167

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BLAST of jgi.p|Trimin1|171266 vs. uniprot
Match: A0A7S1LND1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LND1_ALECA)

HSP 1 Score: 117 bits (293), Expect = 4.710e-26
Identity = 94/289 (32.53%), Postives = 123/289 (42.56%), Query Frame = 1

Query:   37 PSEILIINVGGAKLFVK-RSALTHVEGSKLARMFSGRWDHVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDDRLGLQACAELFGLCDVIPTQGV---AGMPHHITSVAR----------------------LGQESGLEIGRY-----APWQL--LYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFA-LVPWTSSGGWQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHSSYGPVFGNGYDLVSPSS 801
            P+++L +NVGG   F   R  LT +  S+LA +FSGRWD  LPRD SGRIFLD D   F  + + L ++     +  L  P   L  D R G  A   L  L       G    AG P  ++S                         L    G  + R       P +L  L+ +S DG TA  FH LCD +  TV +A    G +FGGF+ L  W + G W      FLF        V    P V        H+PG      A++ H  +GP FG G+DL   +S
Sbjct:   76 PTDVLRLNVGGDPSFATTRKTLTCLGHSRLAELFSGRWDSALPRDESGRIFLDFDPAQFRALLDWLGDVCRIGPSANLPDPEESLPPDLRWGFGALCSLLRLSPRGENGGASAGAGRPASLSSELEDLAIADTTIEDEHTMVIPEGSLLTPALGAHLNRMLGTPDVPKKLVLLHRASRDGFTAAAFHALCDGQVRTVTVAQSVGGYIFGGFSGLATWGNQGQWAPSEGAFLFRLAGPGVQVPSKHPLV--------HNPG-----HAIYCHGGHGPTFGAGHDLYIQNS 351

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|171266 vs. uniprot

BLAST of jgi.p|Trimin1|171266 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YIU4_9STRA	3.960e-206	100.00	TLDc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835YTK3_9STRA	3.480e-116	68.46	TLDc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835YMH1_9STRA	3.760e-115	66.67	TLDc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835YZL9_9STRA	3.660e-107	59.57	TLDc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835Z1Y2_9STRA	3.930e-104	61.31	TLDc domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835Z2V8_9STRA	8.730e-99	63.37	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835Z9G2_9STRA	4.280e-92	56.27	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWT2_9STRA	5.540e-33	57.02	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YNW7_9STRA	1.140e-30	56.14	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1LND1_ALECA	4.710e-26	32.53	Hypothetical protein n=1 Tax=Alexandrium catenella...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_81	contig	Contig_81:415440..416252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|171266\|e_gw1.81.111.1
Description	TLD
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2E2SS@1\|root,2S9ZF@2759\|Eukaryota
Evalue	1.22e-27
Seed ortholog	2903.EOD06308
Hectar predicted targeting category	other localisation
TranscriptId	171588
Track	FilteredModels1
ProteinId	171266

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|171266	gene_9783	Tribonema minus UTEX_B_3156	gene	Contig_81 415440..416252 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9783_1	exon_9783_1	Tribonema minus UTEX_B_3156	exon	Contig_81 415440..416252 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9783	CDS_9783	Tribonema minus UTEX_B_3156	CDS	Contig_81 415440..416252 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|171266	Trimin1\|171266\|e_gw1.81.111.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_81 415440..416252 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_81:415440..416252+
coding sequence from alignment at Contig_81:415440..416252+

spliced messenger RNA

>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Trimin1|171266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_81:415440..416252+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTCATCGTCGGTGTTGAGCAGGACTGCAACCCCTCCGAGATCCT
CATCATCAACGTCGGCGGAGCCAAGCTGTTCGTCAAGCGCAGCGCCCTGA
CGCACGTTGAGGGCAGCAAGCTTGCGAGGATGTTCAGCGGTCGGTGGGAT
CACGTACTGCCACGTGACCACTCAGGCCGCATATTCCTCGACTTGGACAT
CAACTGGTTCCACCCAATCACCAACTTGCTCAGCGAGCTCAGCGGGGGTG
CAGCAGCTGATGAACTGCAGCTGCCAGTCATGCAGCTCAGCGATGATGAC
AGGCTGGGGTTGCAAGCCTGTGCGGAGCTGTTCGGGCTCTGCGACGTCAT
ACCGACACAAGGAGTTGCCGGCATGCCTCACCACATTACATCAGTTGCTC
GCCTAGGGCAGGAAAGCGGACTCGAGATAGGCCGGTATGCGCCCTGGCAG
CTGCTATACCACTCTTCTGTTGATGGCGCCACAGCTCATGAGTTTCACCG
GCTGTGCGATGACAAGCCCAACACCGTCTGCCTGGCCGTCGATGACAAGG
GCAATGTCTTTGGCGGATTCGCATTGGTGCCCTGGACGTCATCTGGCGGC
TGGCAGAGGGACCCTGCTGTCTTTTTATTCTGTCAGGGGAGCGAATCCAC
TGCCGTGCAGCGCTATTCTCCGAGGGTAAGCAGCCCTTACTATGCAGTTT
GCCACGACCCCGGCTGGGGGCCCATCCAGTCGGCTGTCTTCCACCACAGC
AGCTATGGGCCTGTGTTTGGGAATGGCTACGACTTGGTTTCACCTTCATC
GGGGGAACGATAA

protein sequence of jgi.p|Trimin1|171266

>Trimin1|171266|e_gw1.81.111.1 ID=Trimin1|171266|e_gw1.81.111.1|Name=jgi.p|Trimin1|171266|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
MFFIVGVEQDCNPSEILIINVGGAKLFVKRSALTHVEGSKLARMFSGRWD
HVLPRDHSGRIFLDLDINWFHPITNLLSELSGGAAADELQLPVMQLSDDD
RLGLQACAELFGLCDVIPTQGVAGMPHHITSVARLGQESGLEIGRYAPWQ
LLYHSSVDGATAHEFHRLCDDKPNTVCLAVDDKGNVFGGFALVPWTSSGG
WQRDPAVFLFCQGSESTAVQRYSPRVSSPYYAVCHDPGWGPIQSAVFHHS
SYGPVFGNGYDLVSPSSGER*

mRNA from alignment at Contig_81:415440..416252+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Trimin1|171266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_81:415440..416252+ (Tribonema minus UTEX_B_3156 )
ATGTTCTTCATCGTCGGTGTTGAGCAGGACTGCAACCCCTCCGAGATCCT
CATCATCAACGTCGGCGGAGCCAAGCTGTTCGTCAAGCGCAGCGCCCTGA
CGCACGTTGAGGGCAGCAAGCTTGCGAGGATGTTCAGCGGTCGGTGGGAT
CACGTACTGCCACGTGACCACTCAGGCCGCATATTCCTCGACTTGGACAT
CAACTGGTTCCACCCAATCACCAACTTGCTCAGCGAGCTCAGCGGGGGTG
CAGCAGCTGATGAACTGCAGCTGCCAGTCATGCAGCTCAGCGATGATGAC
AGGCTGGGGTTGCAAGCCTGTGCGGAGCTGTTCGGGCTCTGCGACGTCAT
ACCGACACAAGGAGTTGCCGGCATGCCTCACCACATTACATCAGTTGCTC
GCCTAGGGCAGGAAAGCGGACTCGAGATAGGCCGGTATGCGCCCTGGCAG
CTGCTATACCACTCTTCTGTTGATGGCGCCACAGCTCATGAGTTTCACCG
GCTGTGCGATGACAAGCCCAACACCGTCTGCCTGGCCGTCGATGACAAGG
GCAATGTCTTTGGCGGATTCGCATTGGTGCCCTGGACGTCATCTGGCGGC
TGGCAGAGGGACCCTGCTGTCTTTTTATTCTGTCAGGGGAGCGAATCCAC
TGCCGTGCAGCGCTATTCTCCGAGGGTAAGCAGCCCTTACTATGCAGTTT
GCCACGACCCCGGCTGGGGGCCCATCCAGTCGGCTGTCTTCCACCACAGC
AGCTATGGGCCTGTGTTTGGGAATGGCTACGACTTGGTTTCACCTTCATC
GGGGGAACGATAA

Coding sequence (CDS) from alignment at Contig_81:415440..416252+

>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Trimin1|171266|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_81:415440..416252+ (Tribonema minus UTEX_B_3156 )
ATGTTCTTCATCGTCGGTGTTGAGCAGGACTGCAACCCCTCCGAGATCCT
CATCATCAACGTCGGCGGAGCCAAGCTGTTCGTCAAGCGCAGCGCCCTGA
CGCACGTTGAGGGCAGCAAGCTTGCGAGGATGTTCAGCGGTCGGTGGGAT
CACGTACTGCCACGTGACCACTCAGGCCGCATATTCCTCGACTTGGACAT
CAACTGGTTCCACCCAATCACCAACTTGCTCAGCGAGCTCAGCGGGGGTG
CAGCAGCTGATGAACTGCAGCTGCCAGTCATGCAGCTCAGCGATGATGAC
AGGCTGGGGTTGCAAGCCTGTGCGGAGCTGTTCGGGCTCTGCGACGTCAT
ACCGACACAAGGAGTTGCCGGCATGCCTCACCACATTACATCAGTTGCTC
GCCTAGGGCAGGAAAGCGGACTCGAGATAGGCCGGTATGCGCCCTGGCAG
CTGCTATACCACTCTTCTGTTGATGGCGCCACAGCTCATGAGTTTCACCG
GCTGTGCGATGACAAGCCCAACACCGTCTGCCTGGCCGTCGATGACAAGG
GCAATGTCTTTGGCGGATTCGCATTGGTGCCCTGGACGTCATCTGGCGGC
TGGCAGAGGGACCCTGCTGTCTTTTTATTCTGTCAGGGGAGCGAATCCAC
TGCCGTGCAGCGCTATTCTCCGAGGGTAAGCAGCCCTTACTATGCAGTTT
GCCACGACCCCGGCTGGGGGCCCATCCAGTCGGCTGTCTTCCACCACAGC
AGCTATGGGCCTGTGTTTGGGAATGGCTACGACTTGGTTTCACCTTCATC
GGGGGAACGATAA