Trimin1|93624|CE93623_26 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|93624
Unique NameTrimin1|93624|CE93623_26
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length203
Homology
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A835YJJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ1_9STRA)

HSP 1 Score: 356 bits (914), Expect = 1.240e-123
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW 202
            MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW
Sbjct:    1 MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW 202          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.490e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query:   51 VTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89
            VT+AGGLG G NPLD++FPFDPYLLRRSH Y+  MYN W
Sbjct:  624 VTKAGGLGRGSNPLDSFFPFDPYLLRRSHVYIDQMYNTW 662          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S3XPV9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPV9_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0
Query:   45 SVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89
            + G  P  RA    A  NPLD++FPFDPYLLR SH Y+AGMY++W
Sbjct:    4 AAGGDPYARAEREAAQANPLDSFFPFDPYLLRESHGYIAGMYHHW 48          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1CWQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWQ3_CYCTE)

HSP 1 Score: 61.6 bits (148), Expect = 5.270e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89
            GG+G G NPLD++FPFDPYLLRRSH Y+ GMY  W
Sbjct:  132 GGMGQGSNPLDSFFPFDPYLLRRSHRYIDGMYRNW 166          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: B7GDC9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDC9_PHATC)

HSP 1 Score: 60.8 bits (146), Expect = 2.300e-7
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 91
            GGLG G NPLD++FPFDPYLLR+SH +V   YN+W+G
Sbjct:  601 GGLGKGTNPLDSFFPFDPYLLRKSHVFVDPFYNHWNG 637          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1ZLF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.390e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 91
            GGLG G NPLD++FPFDPYLLRRSH +V   Y +W G
Sbjct:  767 GGLGRGSNPLDSFFPFDPYLLRRSHPFVEPFYKHWEG 803          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1UEK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEK1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.120e-6
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89
            GGLG G NPLD++FPFDP+LLRRS+ +V   Y YW
Sbjct:   37 GGLGLGSNPLDSFFPFDPFLLRRSYRFVERSYVYW 71          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S3QGM3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QGM3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.290e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 91
            GGLG G NPLD++FPFDPYLLRRS+ +V   Y +W G
Sbjct:  435 GGLGRGSNPLDSFFPFDPYLLRRSYTFVDPYYRHWEG 471          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S2YI08_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI08_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.450e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 91
            GGLG G NPL  +FPFDPYLLR S+A++   YN+W G
Sbjct:   77 GGLGKGDNPLGTFFPFDPYLLRHSYAFIEPFYNHWKG 113          
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7R9U4C0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4C0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.290e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 0
Query:   55 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 89
            GGLG G NPLD++FPFDP+LL RSH ++   Y YW
Sbjct:  613 GGLGGGLNPLDSFFPFDPFLLERSHRFIEKDYTYW 647          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YJJ1_9STRA1.240e-123100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FL61_ECTSI7.490e-1074.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XPV9_HETAK2.830e-857.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CWQ3_CYCTE5.270e-871.43Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7GDC9_PHATC2.300e-767.57Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZLF3_9STRA4.390e-767.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1UEK1_9STRA2.120e-665.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3QGM3_9STRA3.290e-664.86Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2YI08_9STRA5.450e-662.16Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9U4C0_9STRA5.290e-562.86Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 62..90
e-value: 8.3E-8
score: 31.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:517615..518223 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|93624mRNA_9797Tribonema minus UTEX_B_3156 mRNAContig_81 517556..518296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|93624|CE93623_26 ID=Trimin1|93624|CE93623_26|Name=jgi.p|Trimin1|93624|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQP
VTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGGGGGGDDSD
SGSDDDVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSF
ISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADD
GW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3