mRNA_11780 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351105
Unique NamemRNA_11780
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.670e-61
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR 273
            MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR
Sbjct:    1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR 86
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.300e-31
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGGGR FH+PK+VWSPAGGWW  P  W+RNT  AF  I L  +A+  +S   ERRP+AP  HIPSQ WC HA+EDDPSL
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 79
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 112 bits (279), Expect = 1.330e-29
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGG +KF YPKYVWSPAGGWW  P  W+RNTA+AFG I  + + V  +S  LERR V P++HIPSQ +C HA+EDDPSL
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSL 79
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 110 bits (274), Expect = 5.750e-29
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLA 255
            MGGG++F YPKYVWSP+GGWW +P  W+RNTA+ FG I    + +  LS QLERRPVAP++HI SQ +  HA+EDDPSL 
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSLT 80
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A196SL48_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL48_BLAHN)

HSP 1 Score: 108 bits (270), Expect = 2.330e-28
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            M GG  F YPKYVWSPAGGWW Q   W+RNT +A   +  L++ VF  S  +ERRP+ P +HIPSQ WC HA+EDDP L
Sbjct:    1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 106 bits (265), Expect = 1.410e-27
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   19 GGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAK 258
            GG ++F YPKYVWSP+GGWW  P  W+RNT +    + L  + V  +S +LERRPVAP++HIPSQ WC +AE DDPSL K
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSLQK 80
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: UPI0013901F45 (uncharacterized protein LOC116613693 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901F45)

HSP 1 Score: 106 bits (264), Expect = 5.160e-27
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGW 264
            MGGG+KF YPK+VWSP+GGWW  P  W+RNT +AFG  A + + V  ++ QLERRPV P++HIPSQ    +A+ DDPSL   +
Sbjct:   26 MGGGKKFAYPKFVWSPSGGWWCNPKNWRRNTLIAFGVYAAICIPVAYIALQLERRPVPPYRHIPSQRLAKYAKVDDPSLPDNY 108
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 105 bits (261), Expect = 5.410e-27
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAK 258
            MGGG  ++ PK VWSPAGGWWN P  W+RNT +A   + +L + +F +S   ERRP+ P  HIPSQ WC HA EDDP LAK
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRLAK 80
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.480e-25
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGGGR F++P ++W+P+GGW+  P  W+ NT +  G I +   + F+LS  LERRP+AP  HIPSQ WC HA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
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BLAST of jgi.p|Trimin1|351105 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI)

HSP 1 Score: 99.8 bits (247), Expect = 9.510e-25
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGW 264
            MGG +KF YPKYVWSP GGWW  P  W+RNTA+ F  +  L + V  LS   ERR V P++HIPSQ +  +A+EDDPSL   +
Sbjct:    1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQIPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLPDNY 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351105 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUQ9_9STRA3.670e-61100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G068_ECTSI4.300e-3163.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF0F2211.330e-2963.29uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
A0A6S7H709_PARCT5.750e-2961.25Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A196SL48_BLAHN2.330e-2858.23Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A1X7UGN9_AMPQE1.410e-2757.50Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI0013901F455.160e-2755.42uncharacterized protein LOC116613693 n=1 Tax=Nemat... [more]
A0A1Z5JPC4_FISSO5.410e-2756.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A4D9DFY8_9STRA3.480e-2553.16Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2B4SQG4_STYPI9.510e-2554.22Uncharacterized protein n=1 Tax=Stylophora pistill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:655698..657100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351105|estExt_Genemark1.C_Ctg_800069
Max annot lvl33208|Metazoa
EggNOG OGs2CGJ1@1|root,2S6YK@2759|Eukaryota,3A92W@33154|Opisthokonta,3C3J4@33208|Metazoa
Evalue3.84e-30
Seed ortholog400682.PAC_15716111
Hectar predicted targeting categoryother localisation
TranscriptId351427
TrackFilteredModels1
ProteinId351105
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351105gene_11780Tribonema minus UTEX_B_3156 geneContig_80 655698..657100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351105Trimin1|351105|estExt_Genemark1.C_Ctg_800069Tribonema minus UTEX_B_3156 polypeptideContig_80 655846..657085 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11780_3exon_11780_3Tribonema minus UTEX_B_3156 exonContig_80 655698..655947 -
exon_11780_2exon_11780_2Tribonema minus UTEX_B_3156 exonContig_80 656754..656837 -
exon_11780_1exon_11780_1Tribonema minus UTEX_B_3156 exonContig_80 657011..657100 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11780UTR3_11780Tribonema minus UTEX_B_3156 three_prime_UTRContig_80 655698..655845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11780CDS_11780Tribonema minus UTEX_B_3156 CDSContig_80 657011..657085 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11780UTR5_11780Tribonema minus UTEX_B_3156 five_prime_UTRContig_80 657086..657100 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11780 ID=mRNA_11780|Name=jgi.p|Trimin1|351105|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=424bp|location=Sequence derived from alignment at Contig_80:655698..657100- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGAAAACAAACACCATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTA
TGTCTGGTCCCCGGCGGGCGGCTGGTGGAATCAGCCCACGGCCTGGCAAC
GGAACACGGCGGTGGCGTTTGGGGCTATAGCGTTGCTCAATCTGGCGGTA
TTCAACCTGTCTCGGCAGCTGGAGCGGCGACCGGTTGCTCCCCACAAGCA
CATACCGAGCCAGCTGTGGTGCACGCACGCGGAGGAAGACGACCCGTCGC
TGGCCAAGGGCTGGGGATCACGCTAGAAAATGCTAGAACACGAGCAGCGA
TAGCTGGGGAACGAAAGGAAGCACTCGAGGTAGCAGGTGTAGGGGTCATG
GGCAGGTGTGTATGGTGCTCTGTCGAAAGGACAGGTGCAGGTGCGGAATG
TAAATGGTCACATATTTTACCATG
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protein sequence of jgi.p|Trimin1|351105

>Trimin1|351105|estExt_Genemark1.C_Ctg_800069 ID=Trimin1|351105|estExt_Genemark1.C_Ctg_800069|Name=jgi.p|Trimin1|351105|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSR
QLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR*
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mRNA from alignment at Contig_80:655698..657100-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11780 ID=mRNA_11780|Name=jgi.p|Trimin1|351105|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1403bp|location=Sequence derived from alignment at Contig_80:655698..657100- (Tribonema minus UTEX_B_3156 )
GAGAAAACAAACACCATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTA
TGTCTGGTCCCCGGCGGGCGGCTGGTGGAATCAGCCCACGGTGAGCCTGC
GATTCCCGAATCAGACCTATCAGTTCAGACGCAAATAGCAAAGCTTGACA
GCTGCTGCATTGATTTGCGCAGCATGTATTGCTCAATTCGACTACTTGCA
GCAGGCAATCGCACTATCATACCCAGATCGCACAGACTCAAGTTCGACTT
CGCGTGCTGGCAGGCCTGGCAACGGAACACGGCGGTGGCGTTTGGGGCTA
TAGCGTTGCTCAATCTGGCGGTATTCAACCTGTCTCGGCAGCTGGAGGTG
AGTTTCAGTGATGCAGATTTCTTGAGGAGCAAGTTGATATCCAATCACGC
AGAGGTGCAGAACCTACACTGCAGCGACTGTTTCTGGATGTGAGCGCCGC
TAGGCTTTCAAGGCAGCTGATAAGCTAGAAGCTCATCACTTCAGCAGCAG
CTCTAAAATTGCTGTGCTGACAGGACCTAGCTTTCCAATATATCCATCTC
TCATCCCGCTACGCCTGAATGGGTTTGCAGCTGGTGATTGGCAGAAGCAT
GAGTTGAATTCCAAGTGCTGTAGCCACTGAATTGCATTCATGCTCAAAGC
TATCGGCCGTGTAGATTCAACGCGCTGACAACGTGCCTTCACATAATGAC
AGTAGCCTGCCTCCATGCAATGCGGTGCCCTCCAACTGCCGATGCTCATG
TCCTCCTCAGCATCGTTGTGGAACCCACAATACGGATGATTTCCACTGAG
CCTTTGCAAGTGGTGCCGCCGTATGCACGGCACGCAGTGTTAACTCAACA
CAGCGCCATGTCAACATGTATGTGGACCTGGCGCTGACACTGACACTCCA
CAACGTCGTGGATGCGTGTACCACACATTGCATACATGCTTCTTGAAGTA
CATGCGTTGGTGTCGTTCGCTTGTCATGCCAGCTGCGTTTGCCATGCCAG
TGCAACAGTGGAACACTGCAATGAAACTTCAGTGCTGCATTTAAAAAGTA
CGACTCTTGCATTGCGCCCCATCATTCATGTGATTATTCATGATTTTGAA
TCATCGTTTTCATGTGATGTCGCGTGTCGCCCCTCGCGCGTTCCGCTCCG
CAGCGGCGACCGGTTGCTCCCCACAAGCACATACCGAGCCAGCTGTGGTG
CACGCACGCGGAGGAAGACGACCCGTCGCTGGCCAAGGGCTGGGGATCAC
GCTAGAAAATGCTAGAACACGAGCAGCGATAGCTGGGGAACGAAAGGAAG
CACTCGAGGTAGCAGGTGTAGGGGTCATGGGCAGGTGTGTATGGTGCTCT
GTCGAAAGGACAGGTGCAGGTGCGGAATGTAAATGGTCACATATTTTACC
ATG
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Coding sequence (CDS) from alignment at Contig_80:655698..657100-

>mRNA_11780 ID=mRNA_11780|Name=jgi.p|Trimin1|351105|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_80:655698..657100- (Tribonema minus UTEX_B_3156 )
ATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTATGTCTGGTCCCCGGC
GGGCGGCTGGTGGAATCAGCCCACGGCCTGGCAACGGAACACGGCGGTGG
CGTTTGGGGCTATAGCGTTGCTCAATCTGGCGGTATTCAACCTGTCTCGG
CAGCTGGAGCGGCGACCGGTTGCTCCCCACAAGCACATACCGAGCCAGCT
GTGGTGCACGCACGCGGAGGAAGACGACCCGTCGCTGGCCAAGGGCTGGG
GATCACGCTAG
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