mRNA_11766 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171182
Unique NamemRNA_11766
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A836C9K7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K7_9STRA)

HSP 1 Score: 582 bits (1501), Expect = 1.040e-209
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1
Query:    1 MIRSTCRGFKGALDAQEVGRQQQTVAVDAAASATLIQWALLARLPPSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVALAPAIVF 912
            MIRSTCRGFKGALDAQEVGRQQQTVAVDAAASATLIQWALLARLPPSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVALAPAIVF
Sbjct:    1 MIRSTCRGFKGALDAQEVGRQQQTVAVDAAASATLIQWALLARLPPSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVALAPAIVF 304          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: UPI0019CDF56B (KpsF/GutQ family sugar-phosphate isomerase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=UPI0019CDF56B)

HSP 1 Score: 306 bits (784), Expect = 4.160e-100
Identity = 156/250 (62.40%), Postives = 196/250 (78.40%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PS F+HAAEA HGDLGR+T  D+V+A+SNSGESEE+LRLV+PVKALG  L+A+T +A+SSL +HA+ ++ +G VAEACPMGLVPTASTTAMMV+GDALA+ +F  RG   E YAR+HPGG LGRKLM+V ++MR GA NP+A   D+LR VI +MT T GRPGAASIV+  G L+GFFTDGDLRRLL+  +F  + +IA +M   PK V  D LV+ A +++R  +IDQLPVVD    PVG +D+QDVLS
Sbjct:   88 PSHFVHAAEAAHGDLGRLTKHDIVIAISNSGESEELLRLVKPVKALGPLLVAMTGNASSSLAKHAEYILDIGDVAEACPMGLVPTASTTAMMVLGDALAMAIFNCRGFGREEYARFHPGGHLGRKLMKVSEIMRSGAENPLARDSDSLRDVIKIMTRTAGRPGAASIVNAEGALIGFFTDGDLRRLLENHDFRGESSIADIMVRAPKSVAADQLVVVAARVMREFKIDQLPVVDAENVPVGFIDIQDVLS 337          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A1F9KGY4_9DELT (Uncharacterized protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KGY4_9DELT)

HSP 1 Score: 305 bits (782), Expect = 1.700e-99
Identity = 159/250 (63.60%), Postives = 190/250 (76.00%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PSLF+HAAEAVHGD+GRI   DVVLALS SGES+EILRL++PV+A GA L+ALT     +L + ADAVI +G V+EACPMGLVPTASTTAMMV+GDALA+CLFE R L  E YA++HPGG LGRKLMRV +VMR   +NPV      LR VI VMTET GRPGA SIVD  G LVGFFTDGDLRRLL+   F +DV   +VMH +PK V  + L +    +L+  +IDQ+PVVD+  RPVG +D+QD+LS
Sbjct:  110 PSLFLHAAEAVHGDMGRIKRGDVVLALSFSGESDEILRLIQPVRAFGASLIALTGKRECTLAKQADAVIAIGPVSEACPMGLVPTASTTAMMVVGDALAMCLFEERDLDQEDYAQFHPGGQLGRKLMRVQEVMRRDESNPVVQDTATLREVIRVMTETKGRPGATSIVDGRGRLVGFFTDGDLRRLLEAPTFTLDVLARNVMHRDPKAVRTEQLAVEVACILQDRKIDQVPVVDDKHRPVGFIDIQDILS 359          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A0K1PED1_9DELT (Arabinose 5-phosphate isomerase n=1 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PED1_9DELT)

HSP 1 Score: 282 bits (721), Expect = 2.400e-90
Identity = 140/250 (56.00%), Postives = 188/250 (75.20%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PSL++H AEA+HGDLGR+T DDVVLALSNSG +EEI+RL+ PV+ +GA+++ +T   +S L   AD V+ +G+V EACP+GL PTAS+T ++V+GDALA+ + E R   ++ YA  HP G LG+K+MRV + MR G +NPV    + L + +AVMT+TPG+PGA ++VD  G LVG FTDGDLRRL +R   A++ T+  VM  EP+ VHP+ LVL A Q+LR  +IDQ+PVVDE  RPVGLLDVQD+L+
Sbjct:  105 PSLYLHPAEALHGDLGRVTRDDVVLALSNSGRTEEIVRLMGPVERIGAKVIVMTGDTSSPLAEKADIVLDIGNVEEACPLGLAPTASSTVLLVLGDALAMTVLENRPFGNDDYALIHPSGSLGKKVMRVAEAMRQGDSNPVVRADEPLAKAVAVMTQTPGKPGATNVVDKRGRLVGIFTDGDLRRLFERGPSALECTVGEVMCHEPRTVHPEMLVLEAAQVLRDSRIDQVPVVDEKHRPVGLLDVQDLLA 354          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A3M1TTI2_9DELT (KpsF/GutQ family sugar-phosphate isomerase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1TTI2_9DELT)

HSP 1 Score: 275 bits (703), Expect = 8.340e-88
Identity = 136/253 (53.75%), Postives = 182/253 (71.94%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVAL 894
            PSL++H AEA+HGDLGR+   DVV+ALS+SGE++E++R++ P++ LG  L+ALT  A S+LGR A   + +G VAEACP+GL PTAS+ A++ + DALA+ + E R  T E YAR HP G LGRKLM+V ++MR G ANPV  M + L R +AVMT+TPGRPGA  +VD  G+LVG FTDGDLRRL++       + I+  M+  P+ V P  LV  A +L+R  ++DQL VVD +GRP+GLLDVQD+L   L
Sbjct:   92 PSLYLHPAEALHGDLGRVLAGDVVVALSHSGETDEVVRMLPPLERLGVTLIALTGEAGSTLGRRAHHCLTVGPVAEACPLGLAPTASSIALLALADALAMSVLEARAFTEEEYARLHPAGSLGRKLMKVEEIMRAGEANPVVQMEEPLSRAVAVMTQTPGRPGATHVVDADGVLVGIFTDGDLRRLIEAGHHDFTLPISEFMNPNPRTVAPSDLVRSAAELMRDAKLDQLSVVDASGRPIGLLDVQDLLEARL 344          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: UPI001F58C434 (KpsF/GutQ family sugar-phosphate isomerase n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F58C434)

HSP 1 Score: 275 bits (703), Expect = 1.140e-87
Identity = 139/250 (55.60%), Postives = 181/250 (72.40%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PSLF+H AEA HGDLGRI  DDV++ALSNSGE+EEILRL+  +K +GAR++A+T   +++L R +D V+ +G V EACPMGL PTAST  ++ +GDALA+     R    E YA +HPGG LGR LM+VH++MR   ANP+      L   +AVMT+TPGRPGA ++VD AG LVG FTDGDLRRL++  E      ++SVM   P+ + PD LV+ A  +LR  +IDQ+PVVD+ GRPVGLLDVQD+L+
Sbjct:  102 PSLFVHPAEAAHGDLGRIARDDVLIALSNSGETEEILRLLPALKKIGARIVAVTRDRSNTLARGSDLVLAIGDVEEACPMGLAPTASTAVLLAVGDALAMATLASRPFDREEYALFHPGGKLGRGLMKVHELMRGAEANPLVREDQPLAAAVAVMTQTPGRPGATAVVDAAGKLVGIFTDGDLRRLVEHGEADFTRPVSSVMGRNPRTIRPDALVVDAAHVLRQARIDQVPVVDDDGRPVGLLDVQDLLA 351          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A534XMJ9_9DELT (KpsF/GutQ family sugar-phosphate isomerase n=8 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A534XMJ9_9DELT)

HSP 1 Score: 273 bits (699), Expect = 2.690e-87
Identity = 140/253 (55.34%), Postives = 182/253 (71.94%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVAL 894
            PSL++H AEA+HGDLGR+ P D+VLALSNSGE++E+LRL+  V+ LGA ++ALT+ A +SL   AD V+ +G V EACP+GL PTAST A++ MGDALA+ +   RG + E +A  HPGG LGR+L+RV D+MR G+ NP      +LR   AVMT T GRPGAAS+VD  G L+G FTDGDLRRL++  E      +++VM   P+ V PD L + A  +LR  Q+DQLPVVD  GRPVGLLD+QD+L+  L
Sbjct:   84 PSLYLHPAEALHGDLGRLVPGDLVLALSNSGETDELLRLLPAVRRLGAPIVALTSGARNSLADRADVVLEIGPVPEACPLGLAPTASTVALLAMGDALAMAVQHRRGFSPEQFASLHPGGALGRQLLRVRDMMRTGSRNPTVRSDASLRETAAVMTRTEGRPGAASVVDGQGKLIGIFTDGDLRRLVQSGEVDFTRPVSAVMGKSPRVVGPDDLAIAAAAMLRDIQVDQLPVVDADGRPVGLLDIQDLLAARL 336          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A534VWU3_9DELT (KpsF/GutQ family sugar-phosphate isomerase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534VWU3_9DELT)

HSP 1 Score: 271 bits (694), Expect = 1.680e-86
Identity = 141/253 (55.73%), Postives = 183/253 (72.33%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVAL 894
            PSLF+H AEA+HGDLGR+ P D+VLALSNSGE+EEILRL+  +K +GA ++A+T    SSL   AD V+ +G V EACP+GL PT ST A++ +GDALA+ +   RG + E +A  HP G LG++L+RV +VMR GAANP  S   +LR   AVM+ T GRPGAAS+VD AG LVG FTDGDLRRL+++ +     ++++VM   P+ + PD L + A ++L   QIDQLPVVD  GRPVGLLDVQD+LS  L
Sbjct:   88 PSLFLHPAEALHGDLGRLVPGDLVLALSNSGETEEILRLLPALKRMGAPIIAVTGGQKSSLAAAADVVLEIGPVPEACPLGLAPTTSTVALLALGDALAMTVLHRRGFSPEQFAELHPAGALGKRLLRVREVMRTGAANPTVSKDTSLRETAAVMS-TVGRPGAASVVDAAGKLVGIFTDGDLRRLVQQDDVDFTRSVSAVMGRNPRTIGPDDLAVTAAEILHEGQIDQLPVVDSEGRPVGLLDVQDLLSARL 339          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: A0A7I9VSD6_9DELT (Uncharacterized protein n=1 Tax=Anaeromyxobacter sp. Red267 TaxID=2590199 RepID=A0A7I9VSD6_9DELT)

HSP 1 Score: 271 bits (694), Expect = 1.730e-86
Identity = 137/250 (54.80%), Postives = 178/250 (71.20%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PS ++H AEA HGDLGR+T DD+VLALSNSG++EEILRL+  +K +GAR++ALT    + L R AD  + +G + EACPM L PTAST A++ + DA+A+ + + R    E YA +HPGG LGR LM+V +VMR G  NP+ S    L+  +AVMTETPGRPGA ++VD  G LVG FTDGDLRR ++R     D  +A  M   P+ V P+ LV  A ++LR  +IDQ+PVVDEAGRPVGLLDVQD+L+
Sbjct:   89 PSHYLHPAEAAHGDLGRVTRDDLVLALSNSGDTEEILRLLPALKKIGARVVALTRDLANPLARGADLAVAIGDIEEACPMRLAPTASTAALLAVADAIAMTVLKNRPFDREEYALYHPGGKLGRGLMKVREVMRTGPENPLVSATAPLKAAVAVMTETPGRPGACTVVDREGKLVGVFTDGDLRRSVERGRVDFDAAVAGFMSRNPRTVRPEALVADAARVLRQARIDQVPVVDEAGRPVGLLDVQDLLA 338          
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Match: Q2IGX4_ANADE (KpsF/GutQ family protein n=4 Tax=Anaeromyxobacter TaxID=161492 RepID=Q2IGX4_ANADE)

HSP 1 Score: 270 bits (691), Expect = 5.930e-86
Identity = 140/250 (56.00%), Postives = 180/250 (72.00%), Query Frame = 1
Query:  136 PSLFMHAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTASATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEMRGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVMTETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAEPKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLS 885
            PSL++H AEA HGDLGRI  DD+V ALSNSGE+EEILRL+  +K +GA+++A+TA  ++ L R AD VI +G+V EACPMGL PTAST  ++ +GDAL++ +   R    E YA +HPGG LGR LM+VH++MR   +NPV      L   +AVMTETPGRPGA S+V   G LVG FTDGDLRRL++R +      ++S M   PK V PD LV+ A ++LR  +IDQ+PVVD  GRPVGLLDVQD+L+
Sbjct:   95 PSLYVHPAEAAHGDLGRIARDDLVFALSNSGETEEILRLLPSLKKIGAKIVAITADRSNRLARAADLVIAIGNVEEACPMGLAPTASTAVLLAVGDALSMTVLANRPFDREEYALFHPGGKLGRGLMKVHELMRGETSNPVVREDAPLAAAVAVMTETPGRPGATSVVAADGTLVGIFTDGDLRRLVERGDTDFSRPVSSAMCKGPKTVRPDALVVDAARVLRQARIDQVPVVDADGRPVGLLDVQDLLA 344          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171182 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9K7_9STRA1.040e-209100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0019CDF56B4.160e-10062.40KpsF/GutQ family sugar-phosphate isomerase n=1 Tax... [more]
A0A1F9KGY4_9DELT1.700e-9963.60Uncharacterized protein n=2 Tax=unclassified Delta... [more]
A0A0K1PED1_9DELT2.400e-9056.00Arabinose 5-phosphate isomerase n=1 Tax=Vulgatibac... [more]
A0A3M1TTI2_9DELT8.340e-8853.75KpsF/GutQ family sugar-phosphate isomerase n=1 Tax... [more]
UPI001F58C4341.140e-8755.60KpsF/GutQ family sugar-phosphate isomerase n=1 Tax... [more]
A0A534XMJ9_9DELT2.690e-8755.34KpsF/GutQ family sugar-phosphate isomerase n=8 Tax... [more]
A0A534VWU3_9DELT1.680e-8655.73KpsF/GutQ family sugar-phosphate isomerase n=1 Tax... [more]
A0A7I9VSD6_9DELT1.730e-8654.80Uncharacterized protein n=1 Tax=Anaeromyxobacter s... [more]
Q2IGX4_ANADE5.930e-8656.00KpsF/GutQ family protein n=4 Tax=Anaeromyxobacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:570382..571296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171182|e_gw1.80.75.1
BiGG ReactioniAF987.Gmet_1278
BRITEko00000,ko00001,ko00002,ko01000,ko01005
KEGG rclassRC00541
KEGG ReactionR01530
KEGG ModuleM00063
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG koko:K06041
EC5.3.1.13
Preferred namekdsD
DescriptionBelongs to the SIS family. GutQ KpsF subfamily
COG categoryM
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1MUXD@1224|Proteobacteria,42M0M@68525|delta/epsilon subdivisions,2WJ4Y@28221|Deltaproteobacteria,2YV2A@29|Myxococcales
Evalue9.73e-87
Seed ortholog290397.Adeh_4064
Hectar predicted targeting categoryother localisation
TranscriptId171504
TrackFilteredModels1
ProteinId171182
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171182gene_11766Tribonema minus UTEX_B_3156 geneContig_80 570382..571296 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11766_1exon_11766_1Tribonema minus UTEX_B_3156 exonContig_80 570382..571296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11766CDS_11766Tribonema minus UTEX_B_3156 CDSContig_80 570382..571296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171182Trimin1|171182|e_gw1.80.75.1Tribonema minus UTEX_B_3156 polypeptideContig_80 570382..571296 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11766 ID=mRNA_11766|Name=jgi.p|Trimin1|171182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_80:570382..571296+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGGAGCACGTGCCGTGGGTTCAAAGGCGCTTTGGACGCCCAGGA
GGTCGGGCGACAGCAACAGACAGTGGCTGTAGATGCAGCTGCAAGCGCCA
CGCTCATACAGTGGGCGCTGCTTGCCCGTCTCCCTCCGTCTTTGTTTATG
CACGCCGCCGAGGCTGTGCACGGTGACCTTGGACGCATCACTCCGGATGA
CGTGGTGCTGGCCCTGTCCAACAGTGGTGAGTCCGAGGAGATTCTTCGAC
TGGTGCGCCCCGTGAAGGCCTTGGGAGCGCGCCTGCTGGCCCTCACCGCC
AGCGCCACCTCCAGCCTAGGGCGTCACGCCGACGCGGTCATCGTGATGGG
CAGCGTGGCCGAAGCTTGCCCCATGGGATTGGTCCCCACCGCGAGCACCA
CGGCGATGATGGTTATGGGCGATGCGTTGGCCATATGCCTTTTCGAAATG
CGTGGGTTGACCCATGAGGCTTATGCCCGCTGGCACCCCGGCGGGCCCCT
GGGGCGCAAGCTGATGCGCGTCCATGATGTCATGCGTATCGGGGCAGCCA
ATCCGGTGGCCAGTATGCACGACGCTCTGCGCCGGGTCATCGCTGTAATG
ACCGAGACACCCGGCAGGCCTGGGGCGGCTTCCATCGTGGACGATGCTGG
GATTCTGGTGGGATTTTTTACCGATGGGGACTTGCGGCGGCTCTTAAAGC
GAGCCGAATTTGCGGTGGATGTGACCATCGCCAGCGTCATGCATGCCGAG
CCCAAGCGGGTGCATCCGGATACGCTTGTCTTACATGCCGAGCAGCTGCT
GCGTGCCCATCAAATTGATCAGCTGCCGGTGGTCGATGAAGCTGGGCGCC
CGGTGGGACTTTTAGATGTGCAGGATGTGCTGTCCGTGGCTCTGGCACCT
GCGATTGTTTTTTAG
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protein sequence of jgi.p|Trimin1|171182

>Trimin1|171182|e_gw1.80.75.1 ID=Trimin1|171182|e_gw1.80.75.1|Name=jgi.p|Trimin1|171182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=305bp
MIRSTCRGFKGALDAQEVGRQQQTVAVDAAASATLIQWALLARLPPSLFM
HAAEAVHGDLGRITPDDVVLALSNSGESEEILRLVRPVKALGARLLALTA
SATSSLGRHADAVIVMGSVAEACPMGLVPTASTTAMMVMGDALAICLFEM
RGLTHEAYARWHPGGPLGRKLMRVHDVMRIGAANPVASMHDALRRVIAVM
TETPGRPGAASIVDDAGILVGFFTDGDLRRLLKRAEFAVDVTIASVMHAE
PKRVHPDTLVLHAEQLLRAHQIDQLPVVDEAGRPVGLLDVQDVLSVALAP
AIVF*
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mRNA from alignment at Contig_80:570382..571296+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11766 ID=mRNA_11766|Name=jgi.p|Trimin1|171182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_80:570382..571296+ (Tribonema minus UTEX_B_3156 )
ATGATTAGGAGCACGTGCCGTGGGTTCAAAGGCGCTTTGGACGCCCAGGA GGTCGGGCGACAGCAACAGACAGTGGCTGTAGATGCAGCTGCAAGCGCCA CGCTCATACAGTGGGCGCTGCTTGCCCGTCTCCCTCCGTCTTTGTTTATG CACGCCGCCGAGGCTGTGCACGGTGACCTTGGACGCATCACTCCGGATGA CGTGGTGCTGGCCCTGTCCAACAGTGGTGAGTCCGAGGAGATTCTTCGAC TGGTGCGCCCCGTGAAGGCCTTGGGAGCGCGCCTGCTGGCCCTCACCGCC AGCGCCACCTCCAGCCTAGGGCGTCACGCCGACGCGGTCATCGTGATGGG CAGCGTGGCCGAAGCTTGCCCCATGGGATTGGTCCCCACCGCGAGCACCA CGGCGATGATGGTTATGGGCGATGCGTTGGCCATATGCCTTTTCGAAATG CGTGGGTTGACCCATGAGGCTTATGCCCGCTGGCACCCCGGCGGGCCCCT GGGGCGCAAGCTGATGCGCGTCCATGATGTCATGCGTATCGGGGCAGCCA ATCCGGTGGCCAGTATGCACGACGCTCTGCGCCGGGTCATCGCTGTAATG ACCGAGACACCCGGCAGGCCTGGGGCGGCTTCCATCGTGGACGATGCTGG GATTCTGGTGGGATTTTTTACCGATGGGGACTTGCGGCGGCTCTTAAAGC GAGCCGAATTTGCGGTGGATGTGACCATCGCCAGCGTCATGCATGCCGAG CCCAAGCGGGTGCATCCGGATACGCTTGTCTTACATGCCGAGCAGCTGCT GCGTGCCCATCAAATTGATCAGCTGCCGGTGGTCGATGAAGCTGGGCGCC CGGTGGGACTTTTAGATGTGCAGGATGTGCTGTCCGTGGCTCTGGCACCT GCGATTGTTTTTTAG
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Coding sequence (CDS) from alignment at Contig_80:570382..571296+

>mRNA_11766 ID=mRNA_11766|Name=jgi.p|Trimin1|171182|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=915bp|location=Sequence derived from alignment at Contig_80:570382..571296+ (Tribonema minus UTEX_B_3156 )
ATGATTAGGAGCACGTGCCGTGGGTTCAAAGGCGCTTTGGACGCCCAGGA
GGTCGGGCGACAGCAACAGACAGTGGCTGTAGATGCAGCTGCAAGCGCCA
CGCTCATACAGTGGGCGCTGCTTGCCCGTCTCCCTCCGTCTTTGTTTATG
CACGCCGCCGAGGCTGTGCACGGTGACCTTGGACGCATCACTCCGGATGA
CGTGGTGCTGGCCCTGTCCAACAGTGGTGAGTCCGAGGAGATTCTTCGAC
TGGTGCGCCCCGTGAAGGCCTTGGGAGCGCGCCTGCTGGCCCTCACCGCC
AGCGCCACCTCCAGCCTAGGGCGTCACGCCGACGCGGTCATCGTGATGGG
CAGCGTGGCCGAAGCTTGCCCCATGGGATTGGTCCCCACCGCGAGCACCA
CGGCGATGATGGTTATGGGCGATGCGTTGGCCATATGCCTTTTCGAAATG
CGTGGGTTGACCCATGAGGCTTATGCCCGCTGGCACCCCGGCGGGCCCCT
GGGGCGCAAGCTGATGCGCGTCCATGATGTCATGCGTATCGGGGCAGCCA
ATCCGGTGGCCAGTATGCACGACGCTCTGCGCCGGGTCATCGCTGTAATG
ACCGAGACACCCGGCAGGCCTGGGGCGGCTTCCATCGTGGACGATGCTGG
GATTCTGGTGGGATTTTTTACCGATGGGGACTTGCGGCGGCTCTTAAAGC
GAGCCGAATTTGCGGTGGATGTGACCATCGCCAGCGTCATGCATGCCGAG
CCCAAGCGGGTGCATCCGGATACGCTTGTCTTACATGCCGAGCAGCTGCT
GCGTGCCCATCAAATTGATCAGCTGCCGGTGGTCGATGAAGCTGGGCGCC
CGGTGGGACTTTTAGATGTGCAGGATGTGCTGTCCGTGGCTCTGGCACCT
GCGATTGTTTTTTAG
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