mRNA_2851 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|335451
Unique NamemRNA_2851
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A835YMJ6_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ6_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.570e-71
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:  106 MEVDRPQDDKDLIRDPRKPAGQKEGEEAAXXXXXXXXXXXSHAAEAGSAGSPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVDVI 468
            MEVDRPQDDKDLIRDPRKPAGQKEGEEAAXXXXXXXXXXXSHAAEAGSAGSPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVDVI
Sbjct:    1 MEVDRPQDDKDLIRDPRKPAGQKEGEEAAXXXXXXXXXXXSHAAEAGSAGSPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVDVI 121
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A836CDM0_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDM0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.130e-35
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:  106 MEVDRPQDDKDLIRDPRKPAGQKEGEEAAXXXXXXXXXXXSHAAEAGSAGSPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKV 459
            MEV RP  D D+I+D RK AG K G+  A           + A +      P VQ N++RC+ C+KKVGLTG+ C+CGYV+CSKHRYPEEH+C+YDF+AS+R QLAKTVVGGG F KV
Sbjct:    1 MEVQRPSADSDVIKDLRKVAGAK-GD--AAPPAEETAVTTASAGKQQEQSPPGVQKNRSRCYNCSKKVGLTGLECKCGYVFCSKHRYPEEHSCSYDFRASDRAQLAKTVVGGGQFIKV 115
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BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A1V9ZPK1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZPK1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.360e-25
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  262 AVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            AVQ NK+RC+ C KKVGLTG+ CRCGYVYCS HR+ ++H CT+D+KA++R +LAK   GGGAF K+D
Sbjct:   82 AVQKNKSRCWDCKKKVGLTGIECRCGYVYCSNHRFADQHNCTFDYKAADRAELAKRNPGGGAFEKID 148
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: T0QWK0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QWK0_SAPDV)

HSP 1 Score: 103 bits (258), Expect = 1.870e-25
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:  259 PAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            P VQ NK RC+ C KKVGLTG+ CRCGYVYCS HR+ ++H C++D+KA++R +LAK   GGGAF KVD
Sbjct:   80 PVVQKNKGRCWDCKKKVGLTGIECRCGYVYCSNHRFADQHNCSFDYKAADRAELAKRNPGGGAFDKVD 147
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A836CLQ8_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.060e-25
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:  256 SPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            +P VQ ++ RCF CNKKVGLTG+ CRC  V+C  HRYPE H C +DFKAS+R  L K V+GGGAFSKVD
Sbjct:   82 APPVQKSRTRCFKCNKKVGLTGIECRCKLVFCGLHRYPESHDCGFDFKASDRLALEKVVLGGGAFSKVD 150
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: D8LNW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.190e-24
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:  265 VQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            VQ N+ RCF C+KKVG TG+ACRC YV+CS HRYP++H CT+DFK S+R  L +TVVGGG FSKV+
Sbjct:  203 VQKNRKRCFTCHKKVGYTGIACRCDYVFCSLHRYPDQHDCTFDFKTSDRNDLKRTVVGGGQFSKVE 268
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BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A024U3M7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3M7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.420e-24
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  262 AVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            AVQ NK RC+ C KKVGLTG+ CRCG+VYC  HR+ ++H C YDFKA++R +LAK   GGGAF KVD
Sbjct:   79 AVQKNKGRCWECKKKVGLTGIECRCGFVYCGSHRFADQHNCAYDFKAADRAELAKRNPGGGAFDKVD 145
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A396ZZM3_9STRA (AN1-type domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZZM3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.400e-24
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  265 VQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            VQ NKARC+ CNKKVGLTG+ CRCGYVYC  HRY ++H C++D KA +  +LAK   GGG F+KVD
Sbjct:   52 VQTNKARCWACNKKVGLTGIECRCGYVYCGTHRYADQHECSFDHKAVDMAELAKRNPGGGHFNKVD 117
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A1W0A2A1_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.790e-24
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:  259 PAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            P VQ NK+RC+ C KKVGLTG+ CRCGYV+C+ HR+ ++H C++D+KA++R +LAK   GGG F K+D
Sbjct:   77 PVVQKNKSRCWDCKKKVGLTGIECRCGYVFCTNHRFADQHNCSFDYKAADRAELAKRNPGGGVFEKID 144
[Close]
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Match: A0A2D4C9V6_PYTIN (Zinc-finger containing protein, partial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9V6_PYTIN)

HSP 1 Score: 99.4 bits (246), Expect = 7.940e-24
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  241 AGSAGSPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKASERTQLAKTVVGGGAFSKVD 462
            A S   P VQ NK RC+ C KKVGLT + CRCGYV+CS HRYP++H C++DFKA++R +LA+   GGG F K++
Sbjct:   59 AASGDEPPVQKNKKRCWECKKKVGLTAIECRCGYVFCSGHRYPDQHNCSFDFKAADRAELARRNPGGGQFGKLE 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|335451 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMJ6_9STRA1.570e-71100.00AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDM0_9STRA1.130e-3555.93AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A1V9ZPK1_9STRA1.360e-2564.18Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QWK0_SAPDV1.870e-2563.24Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A836CLQ8_9STRA4.060e-2565.22AN1-type domain-containing protein n=1 Tax=Tribone... [more]
D8LNW2_ECTSI1.190e-2466.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024U3M7_9STRA1.420e-2464.18Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A396ZZM3_9STRA7.400e-2463.64AN1-type domain-containing protein n=4 Tax=Aphanom... [more]
A0A1W0A2A1_9STRA7.790e-2457.35Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4C9V6_PYTIN7.940e-2456.76Zinc-finger containing protein, partial n=1 Tax=Py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:1310156..1312181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|335451|MIX44214_52_94
Descriptionzinc ion binding
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3173@1|root,KOG3173@2759|Eukaryota
Evalue5.7e-26
Seed ortholog2880.D8LNW2
Hectar predicted targeting categoryother localisation
TranscriptId335773
TrackFilteredModels1
ProteinId335451
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|335451gene_2851Tribonema minus UTEX_B_3156 geneContig_8 1310156..1312181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|335451Trimin1|335451|MIX44214_52_94Tribonema minus UTEX_B_3156 polypeptideContig_8 1310156..1312076 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2851_2exon_2851_2Tribonema minus UTEX_B_3156 exonContig_8 1310156..1310307 -
exon_2851_1exon_2851_1Tribonema minus UTEX_B_3156 exonContig_8 1311863..1312181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2851CDS_2851Tribonema minus UTEX_B_3156 CDSContig_8 1311863..1312076 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2851UTR5_2851Tribonema minus UTEX_B_3156 five_prime_UTRContig_8 1312077..1312181 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Trimin1|335451|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_8:1310156..1312181- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCACCACTGCAGACTGCGGTCTGAGCACAACTCTCCGCGACACTTAAC
AGCGCGATAGCGCAGGAGCTGGCCCTCTCACATCACAAAGTCAGCTGCTG
GAGAGATGGAGGTGGACCGCCCCCAGGACGACAAGGACCTCATCCGTGAC
CCCCGTAAGCCAGCTGGCCAGAAAGAGGGCGAGGAAGCAGCGGCGGCCGC
TGCGGGTGGTGCTGTTGCCAGCGCGTCCCATGCTGCCGAGGCAGGGAGCG
CTGGCTCCCCAGCTGTGCAGCTCAACAAGGCCCGTTGCTTTGGGTGCAAC
AAGAAAGTCGGCCTGACCGGCATGGCGTGCCGCTGCGGGTACGTGTACTG
CTCCAAGCACCGGTACCCGGAGGAACACGCGTGCACATATGACTTCAAGG
CCAGCGAGCGCACGCAGCTCGCCAAGACCGTTGTCGGCGGCGGCGCGTTC
TCAAAGGTCGACGTGATCTGA
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protein sequence of jgi.p|Trimin1|335451

>Trimin1|335451|MIX44214_52_94 ID=Trimin1|335451|MIX44214_52_94|Name=jgi.p|Trimin1|335451|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
MEVDRPQDDKDLIRDPRKPAGQKEGEEAAAAAAGGAVASASHAAEAGSAG
SPAVQLNKARCFGCNKKVGLTGMACRCGYVYCSKHRYPEEHACTYDFKAS
ERTQLAKTVVGGGAFSKVDVI*
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mRNA from alignment at Contig_8:1310156..1312181-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Trimin1|335451|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2026bp|location=Sequence derived from alignment at Contig_8:1310156..1312181- (Tribonema minus UTEX_B_3156 )
AAGCACCACTGCAGACTGCGGTCTGAGCACAACTCTCCGCGACACTTAAC
AGCGCGATAGCGCAGGAGCTGGCCCTCTCACATCACAAAGTCAGCTGCTG
GAGAGATGGAGGTGGACCGCCCCCAGGACGACAAGGACCTCATCCGTGAC
CCCCGTAAGCCAGCTGGCCAGAAAGAGGGCGAGGAAGCAGCGGCGGCCGC
TGCGGGTGGTGCTGTTGCCAGCGCGTCCCATGCTGCCGAGGCAGGGAGCG
CTGGCTCCCCAGCTGTGCAGCTCAACAAGGCCCGTTGCTTTGGGTGCAAC
AAGAAAGTCGGCCTGACCGGTGAGTGTGCAACTCTTTACTTCAGCGCACT
CTCCATCGTTCAACCACCTAATTTCCACTTAGCACCGCTGTGCATTGACT
TCGTGCCGGTGTTTATCGCGCGGACCCGGTTGAGGTGATGTGCGAGCAAG
AGAGCGGAAAATTTCGGCAATCAATGTCATTATTGGTGCCGTCTCTACCG
ATTGGTCGTATATCAACTGTGCCTTCAAGCATTTGTCTCACGAGCCATAT
GCAAGCACGGCCAGTCACCGTCGATCGCGCCAATGCCCTAACCATTGAGG
CCTTCAACCAATCTCGGTGAATGTCAGCCACTGTTTCATATCTGGTGCAG
AGGCAGTCTGTGCTTCAAGCGTTGGAGCAAATCTGGCCAACAAAGTTCAC
GATGTCATCGTTTGGACTTGATACCCACTATCGTTGCATGACTGCACTTG
CGCCTGAAGCATACAGTATCACCCTGGATCGATTGCCGTGCATTAATGCT
CAGCGATGCGCTTGAGCATGATGAGCACTGTGCACAGTATGGTCTTTCAC
AACCCTCTCACGTTTTCTCATGGTGCTCTGCGATAGCTCCCTTTGCTTTC
GCTGATGCTGTCATGGTGGTGACGGTGGTAGACATTCACTTCTGTTTTGA
TCGCTGCACACGATTGCAATCGTGACTGACCGCCGCAGGGCTAGTCTAAT
ACAACTGAATTCAGTACTTTCCATCATCAACTGCGGTCTAGTTGCAGTGG
GTATTTGAGCGTCACAGCACTCGAAGCATCTCAACGTTTTACGGTCATTT
AGATGGCTGTTCAAGGCCTGGCAAGTGGACAACATTGCCATTTTTGTCGA
CCACTGTGCATGCAGCCCTCTACACACCAGCATGCACTGATTGCTGCAGC
ACCAGCAAGACATGCTTGGCCAACGTGCGTAGGCCATGCTTTCACATCTA
CAACCAGCTCGTCCTCAGCTTAAATGTGTGCCGTTACATACTTCAAGTAG
AAGTATCTGAATCTGACGGCATCGATGTGTCTGCTTATATCTTCACGTTG
CACTGTTGAACTCTCACCATTGCTTACTGGGCTGATGTCCAGCAGCCTGT
GGTTTTCAGTAGTAGTGTGCCCGACAACAACGTGATGTCATTGACTATGC
AAGTGAGTCACGTTTGCAAGTATGTGAATTCGTCTGGCACACCTGTAGCA
TCTCATTGCTCGCCGCTGCTTTGGTCATGATTAGCCTCCATGACCCCATG
CAAGCTGCTTGTGCAATCACACCATTGAGAGGGTCTCTTGGGCTTCCCTA
ATAAAACATGCAGATTTTGTTGGCTTGATGATAGTGTGCAGTCAAGGTTT
CATCTGCGGTTGACGTGCACAATCCGTTTTGCTGTTGTCTTGTCCGAAGG
CCTTTTGTACACGTCCATCATCAAGTTACATAAGTGATGCTGCTTCAACG
TCGCATGCGCACCAGCATCATGCGCAGTAATCGCTCCCTCTTAGCCATGA
TGCATCAAACATGATAAGGCGACCCATGCCAAGGTGCGTCACGCTTACCC
CCCCTAAATTGTGAATGCCCGCAGGCATGGCGTGCCGCTGCGGGTACGTG
TACTGCTCCAAGCACCGGTACCCGGAGGAACACGCGTGCACATATGACTT
CAAGGCCAGCGAGCGCACGCAGCTCGCCAAGACCGTTGTCGGCGGCGGCG
CGTTCTCAAAGGTCGACGTGATCTGA
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Coding sequence (CDS) from alignment at Contig_8:1310156..1312181-

>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Trimin1|335451|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_8:1310156..1312181- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGACCGCCCCCAGGACGACAAGGACCTCATCCGTGACCCCCG
TAAGCCAGCTGGCCAGAAAGAGGGCGAGGAAGCAGCGGCGGCCGCTGCGG
GTGGTGCTGTTGCCAGCGCGTCCCATGCTGCCGAGGCAGGGAGCGCTGGC
TCCCCAGCTGTGCAGCTCAACAAGGCCCGTTGCTTTGGGTGCAACAAGAA
AGTCGGCCTGACCGGCATGGCGTGCCGCTGCGGGTACGTGTACTGCTCCA
AGCACCGGTACCCGGAGGAACACGCGTGCACATATGACTTCAAGGCCAGC
GAGCGCACGCAGCTCGCCAAGACCGTTGTCGGCGGCGGCGCGTTCTCAAA
GGTCGACGTGATCTGA
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