mRNA_2744 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152603
Unique NamemRNA_2744
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|152603 vs. uniprot
Match: A0A836C8E4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.320e-38
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 
Query:    1 KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGRSRXXXXXXXXXXXXXXXXXXGAAEGCAARPLYGAPGAPPRVCARHRTGDMV 438
            KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGRSRXXXXXXXXXXXXXXXXXXGAAEGCAARPLYGAPGAPPRVCARHRTGDMV
Sbjct:    1 KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGRSRXXXXXXXXXXXXXXXXXXGAAEGCAARPLYGAPGAPPRVCARHRTGDMV 146
[Close]
BLAST of jgi.p|Trimin1|152603 vs. uniprot
Match: A0A836CDB4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDB4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKR 117
            KHCE +GCIVLPTFG+ G AKRFC RH+L GMLDLKSKR
Sbjct:    1 KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKR 39
[Close]
BLAST of jgi.p|Trimin1|152603 vs. uniprot
Match: D8LL34_ECTSI (EsV-1-7 (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL34_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.530e-5
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSK 114
            + CEREGC V P++G      RFCARH+L GM+D++++
Sbjct:  105 RQCEREGCNVQPSYGKVWKKPRFCARHKLPGMMDVRNR 142
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152603 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C8E4_9STRA2.320e-38100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDB4_9STRA1.200e-1379.49Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LL34_ECTSI8.530e-550.00EsV-1-7 (Partial) (Fragment) n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:297951..298388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152603|gw1.8.296.1
Max annot lvl2759|Eukaryota
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Evalue6.92e-05
Seed ortholog248742.XP_005649603.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-26_003370.1
TranscriptId152925
TrackFilteredModels1
ProteinId152603
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152603gene_2744Tribonema minus UTEX_B_3156 geneContig_8 297951..298388 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2744_1exon_2744_1Tribonema minus UTEX_B_3156 exonContig_8 297951..298388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2744CDS_2744Tribonema minus UTEX_B_3156 CDSContig_8 297951..298388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152603Trimin1|152603|gw1.8.296.1Tribonema minus UTEX_B_3156 polypeptideContig_8 297951..298388 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2744 ID=mRNA_2744|Name=jgi.p|Trimin1|152603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_8:297951..298388+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCACTGCGAGCGCGAGGGCTGCATCGTGCTGCCGACGTTCGGCTACGC
GGGCGCCGCCAAGCGCTTCTGCGCGCGGCACCGCCTCGCCGGCATGCTCG
ACCTCAAGTCCAAGCGTTGCGAGCGCGGCGGCTGCGGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGGCGCCACCGCGCGCC
CGGCATGGTCAACCTGCGCGGCAAGCGCTGCGAGCACCCCGCGTGCCGCG
TCTCGCCGTCCTTCGGCCACGAGGGCGAGGGGCGCTCGCGCTTCTGCGCC
GTGCACCGCGCCGCCGGCATGGTCGACCTCATGCACAAGCGCTGCGGCGC
CGCGGAGGGCTGCGCGGCGCGCCCGCTCTACGGCGCGCCCGGCGCGCCGC
CGCGCGTCTGCGCGCGCCACCGCACCGGCGACATGGTG
back to top

protein sequence of jgi.p|Trimin1|152603

>Trimin1|152603|gw1.8.296.1 ID=Trimin1|152603|gw1.8.296.1|Name=jgi.p|Trimin1|152603|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKRCERGGCGVVPS
FGFEGGTRQFCGRHRAPGMVNLRGKRCEHPACRVSPSFGHEGEGRSRFCA
VHRAAGMVDLMHKRCGAAEGCAARPLYGAPGAPPRVCARHRTGDMV
back to top

mRNA from alignment at Contig_8:297951..298388+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2744 ID=mRNA_2744|Name=jgi.p|Trimin1|152603|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_8:297951..298388+ (Tribonema minus UTEX_B_3156 )
AAGCACTGCGAGCGCGAGGGCTGCATCGTGCTGCCGACGTTCGGCTACGC
GGGCGCCGCCAAGCGCTTCTGCGCGCGGCACCGCCTCGCCGGCATGCTCG
ACCTCAAGTCCAAGCGTTGCGAGCGCGGCGGCTGCGGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGGCGCCACCGCGCGCC
CGGCATGGTCAACCTGCGCGGCAAGCGCTGCGAGCACCCCGCGTGCCGCG
TCTCGCCGTCCTTCGGCCACGAGGGCGAGGGGCGCTCGCGCTTCTGCGCC
GTGCACCGCGCCGCCGGCATGGTCGACCTCATGCACAAGCGCTGCGGCGC
CGCGGAGGGCTGCGCGGCGCGCCCGCTCTACGGCGCGCCCGGCGCGCCGC
CGCGCGTCTGCGCGCGCCACCGCACCGGCGACATGGTG
back to top

Coding sequence (CDS) from alignment at Contig_8:297951..298388+

>mRNA_2744 ID=mRNA_2744|Name=jgi.p|Trimin1|152603|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_8:297951..298388+ (Tribonema minus UTEX_B_3156 )
AAGCACTGCGAGCGCGAGGGCTGCATCGTGCTGCCGACGTTCGGCTACGC
GGGCGCCGCCAAGCGCTTCTGCGCGCGGCACCGCCTCGCCGGCATGCTCG
ACCTCAAGTCCAAGCGTTGCGAGCGCGGCGGCTGCGGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGGCGCCACCGCGCGCC
CGGCATGGTCAACCTGCGCGGCAAGCGCTGCGAGCACCCCGCGTGCCGCG
TCTCGCCGTCCTTCGGCCACGAGGGCGAGGGGCGCTCGCGCTTCTGCGCC
GTGCACCGCGCCGCCGGCATGGTCGACCTCATGCACAAGCGCTGCGGCGC
CGCGGAGGGCTGCGCGGCGCGCCCGCTCTACGGCGCGCCCGGCGCGCCGC
CGCGCGTCTGCGCGCGCCACCGCACCGGCGACATGGTG
back to top