mRNA_2817 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130991
Unique NamemRNA_2817
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A835YTZ1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTZ1_9STRA)

HSP 1 Score: 575 bits (1483), Expect = 2.190e-207
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1
Query:    1 HGYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            HGYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL
Sbjct:    1 HGYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 292          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 1.470e-80
Identity = 146/291 (50.17%), Postives = 198/291 (68.04%), Query Frame = 1
Query:    7 YVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAI-VAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            Y  ARHVADFG+V+ G TK + FRV NTG+ G VSW+F+K  +AGSG+++EP++V RLPEGA+A+ +A+FQAR+ F +G R + LPI +KNGP T++VLRA V  P V +S   L+F  V+VG+S T  +Q+HN  PV A+W+ K      D RDEA+F++ PRGG L    R NV VEFVP + + Y+ K+ +RVA++ K   + LQG G  PRV FDPP   +GPVLP AP   +  V + ND A  +E+FSLDFD  +  EE  L+ A  +   +VLR+PPR PG+GL
Sbjct: 1856 YTVARHVADFGNVVVGFTKTKAFRVANTGKLGPVSWSFNKNSIAGSGYSIEPEKVVRLPEGASAAFSASFQARKGFPHGIRSLELPIKLKNGPQTVVVLRANVTSPEVELSHEELDFDSVLVGQSKTKYIQVHNTSPVVAEWDFKR--LFGDPRDEAKFKLTPRGGSLHKDQRVNVQVEFVPTDDRVYSLKMAVRVASTTKNASVVLQGRGAQPRVRFDPPMLDMGPVLPHAPQGDSREVTVFNDSAWDVEIFSLDFDKAHLVEEEILSRATCFAADEVLRLPPRLPGQGL 2144          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 4.390e-79
Identity = 144/291 (49.48%), Postives = 196/291 (67.35%), Query Frame = 1
Query:    7 YVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAI-VAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            Y  ARHVADFG+V+ G TK + FRV NTG+ G VSW+F+K  LAGSG+++EP++V RLPEGA+A+ +A+FQAR+ F +G R + LPI +KNGP T++VLRA V  P   +S   L+F  V+VG+S T  +Q+HN  PV A+W+ K      D RDE +F++ P+GG L    R NV VEFVP + + Y+ K+ +RVA++ K   + LQG G  PRV FDPP   +GPVLP AP   +  V + ND A  +E+FSLDFD  +  EE  L+ A  +   +VLR+PPR PG+GL
Sbjct: 1836 YTVARHVADFGNVVVGFTKTKAFRVANTGKLGPVSWSFNKNSLAGSGYSIEPEKVVRLPEGASAAFSASFQARKGFPHGIRSLELPITLKNGPQTVVVLRANVTSPEAELSHEELDFDSVLVGQSKTKYIQVHNISPVIAEWDFKR--LFGDPRDEVKFKMTPKGGSLHKDQRVNVQVEFVPTDDRVYSLKMAVRVASTTKNASVVLQGRGAQPRVRFDPPMLDMGPVLPHAPQGDSREVTVFNDSAWDVEIFSLDFDKAHLVEEEILSRATCFAADEVLRLPPRLPGQGL 2124          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.030e-71
Identity = 130/291 (44.67%), Postives = 185/291 (63.57%), Query Frame = 1
Query:    7 YVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWA-RAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            ++ ARHV++FGHVI G T+KRTF++ NT   G +SW FDK +LAG+GF+LEP++V RLPE  + S   TF A++ F  G REV +P+ VKNGP+ +++LRA V VP + VS   ++FG V VG      LQL N  PV ADW+ K  +   + +DE  F++ PRGG LAPG   NV++EFVP++ + +A K+PL+VA+  K   I L G+G    +   P  A  GP+LP  P     ++ + N+ +  +EV+S+DFD +Y  EE  L    GY E  V+++P R PGE L
Sbjct:  966 FIIARHVSNFGHVILGQTRKRTFKITNTSALGQLSWVFDKNILAGTGFSLEPEKVVRLPENQSVSFNVTFSAKKNFALGEREVIVPLDVKNGPSMIIILRAIVTVPELTVSQDHVDFGPVWVGCVKRVFLQLKNVSPVNADWDFKKAMG--NTKDELNFKIEPRGGLLAPGQCTNVSIEFVPVDERPHALKIPLKVASGNKAKNILLTGMGEQVHLTLSPSLAEFGPILPKTPGGITKVITLTNESSKSVEVYSVDFDKKYITEEEILMKVSGYGEDGVMQLPVRSPGEPL 1254          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN)

HSP 1 Score: 244 bits (624), Expect = 7.770e-70
Identity = 134/298 (44.97%), Postives = 187/298 (62.75%), Query Frame = 1
Query:    1 HGYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLP-----GAPWARAI-VAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            HG+V A H  DFG+V+ G  +KRTFR+ N+   G +SW F+K +LA +GF++EP++V RL EGA A+    F A+++   G +E+ LP+ VKNGP T +VL+A V +P +++SA  L+FG V VG   T  +Q+HN  PV A+W+ K  +    ARDEARF ++PR G L PG + NVAVEFVP++ +  + KLPL+V  S KT ++   G GV  ++ F P    +GPVLP     G P   A  V M+N    P+EVFSLDFD +Y  EE  L+    + E  +LR+P R  GE L
Sbjct: 1542 HGFVLAWHACDFGNVVSGTHRKRTFRITNSSLTGPLSWFFEKKVLANTGFSIEPEKVVRLAEGATATFEVNFNAKKSLRLGHKELLLPVDVKNGPLTCIVLQANVTMPDISLSAEALDFGPVWVGCGRTMHVQIHNTSPVLAEWDFKKAMGA--ARDEARFTLSPRSGALLPGRKQNVAVEFVPVDDRPCSLKLPLKVNQSTKTWLVNFAGAGVTAKLQFSPSVVEIGPVLPFEDGTGRPGTTATTVTMKNASDRPVEVFSLDFDDEYVTEEAFLSTYDAFGEDGLLRLPVRNLGEKL 1837          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A1V9Z071_9STRA (Hydrocephalus-inducing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z071_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.430e-69
Identity = 136/291 (46.74%), Postives = 180/291 (61.86%), Query Frame = 1
Query:    4 GYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            GY+ A+++ DFG+V+ G  + + F + NTG+    S+  DK L  G GFA++P+RV RLPE        TF AR+   +G   V L + VKNGP +LL  +A V VP + + A  ++FG VVVGRS     QL+N  PV  +W LK P+    ARD + F + P GG L PG R N+ VEF+PLEG+ Y  K+P++++++ KT  I  QG G   RVAFDPP A LGPVLP A      V MRN+   P+EV+SLDFDAQY  EE  L  A GY + D LR+P R PG+GL
Sbjct: 1557 GYLLAQYILDFGNVVTGTHRVKKFVITNTGQI-PTSFQLDKNLALGRGFAIDPERVVRLPEKKGVEFNVTFTARKNGRHGAHGVNLLLDVKNGPPSLLTFKANVTVPDLVLLAENIDFGKVVVGRSHVVHSQLYNNSPVVVEWSLKKPMG--SARDVSYFRMEPMGGLLHPGTRCNLKVEFMPLEGRLYHVKVPVKISSNPKTRAISCQGEGTELRVAFDPPMAELGPVLPFATPVERTVVMRNESDHPVEVYSLDFDAQYRDEEEILRDASGYGDDDYLRLPLRLPGQGL 1844          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A067C275_SAPPC (MSP domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C275_SAPPC)

HSP 1 Score: 235 bits (599), Expect = 1.730e-66
Identity = 133/291 (45.70%), Postives = 176/291 (60.48%), Query Frame = 1
Query:    4 GYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            G++ A+++ DFG+V+ G  + + F V NTG   A S+  DK L    GFA++P+RV RLPE        TF AR+   +GP  V L + VKNGP +L+  +A V VP + + A  L+FG VVVGRS     Q  N  PV  +W LK P+    ARD   F + P GG L PG R N+ VEF+PLEG+ Y  K+P++++++ KT  I  QG G   RV+FDPP A LGPVLP +P    IV MRN+    +EV+SLDFD Q+  EE  L  A GY + D LR+P R PG GL
Sbjct: 1570 GFLLAQYILDFGNVVTGTHRVKKFVVTNTGHVPA-SFQVDKNLALSRGFAIDPERVVRLPEKKGVEFNVTFTARKNGRHGPHGVNLLLDVKNGPPSLVTFKANVTVPDLVLLADNLDFGKVVVGRSHVVHSQFFNNSPVVVEWALKKPMG--SARDVGYFRMEPTGGLLHPGTRCNIKVEFMPLEGRLYHVKVPVKISSNPKTRSITCQGEGSELRVSFDPPMAELGPVLPCSPPIERIVTMRNESDHAVEVYSLDFDTQFKTEEDILRDASGYGDDDYLRLPLRLPGTGL 1857          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A485LSA9_9STRA (Aste57867_25117 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSA9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.410e-64
Identity = 123/291 (42.27%), Postives = 176/291 (60.48%), Query Frame = 1
Query:    4 GYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            G++ ++++ DFG+V+ G  + + F + NTG+    S+  DK L    GF++EP+RV RLPE  +   T TFQAR+   +G   V + + VKNGP++LL L+A V VP +  S   LEFG V+VGRS     Q HN  PV  +W LK P+  S  RD   F + P+ G L PG R N+ +EF+P+EG+ +  K+P+++  + +T  I   G G   RV+F PP A LGP+LP A     ++ M+N+    IEV+SLDFD QY  EE  L  A GY + D+LR+P R PG+ L
Sbjct: 1868 GFILSQYILDFGNVVSGTHRVKKFLLTNTGQV-PTSFQIDKNLALSRGFSIEPERVVRLPEKKSIEFTVTFQARKNGRHGAHGVNIVLDVKNGPSSLLTLKANVTVPDIVFSQEALEFGQVLVGRSHVMHTQFHNTSPVCVEWSLKKPIGSS--RDVGYFRMEPQSGLLHPGTRCNLRIEFIPVEGRLFHVKVPVKINANPRTRAISCSGEGTELRVSFAPPMAELGPLLPFATPVERLITMKNESDYAIEVYSLDFDTQYKDEEEVLRNASGYSDDDLLRLPLRLPGDPL 2155          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A8J2SKS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 3.280e-64
Identity = 124/291 (42.61%), Postives = 176/291 (60.48%), Query Frame = 1
Query:    7 YVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYD-ERDVLRVPPRQPGEGL 876
            +V A H+ DF HV+ GATKKR F + N   +G +SW+ DK LL  +GF+++P++   L EG A +    F+A++    G RE+ LPI  +NGP T++VLRA + VP V  S   LEFGDV  G   T+ +QLHN  PVPA+W+ KAPL    ARD  RF + PR G L P  + NVAVEF P++ +  + +LPL+VANS  +  +   G G+  ++ F+P    +GP+LP +      V +RN    P+EVFSLDFD  +  EE  L      D + +++R+P R+PG  L
Sbjct: 1442 FVLAWHLCDFKHVVSGATKKRKFLIKNDSESGRLSWSVDKKLLTNTGFSVDPEKFV-LAEGEATTFEVNFKAQKNLPLGDRELRLPITQRNGPVTMVVLRASICVPEVVASHDALEFGDVWTGCGRTAYVQLHNVSPVPAEWDFKAPLG--KARDAHRFTLTPRSGVLKPSEKVNVAVEFAPVDDRPCSLRLPLKVANSTSSSTLLFTGKGIAAKLKFEPSLVEVGPILPFSDIVSGAVTLRNASDRPVEVFSLDFDTDFMTEEEQLRERDDLDWDNNLIRLPVREPGSQL 1729          
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Match: A0A397B3D7_9STRA (MSP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B3D7_9STRA)

HSP 1 Score: 227 bits (579), Expect = 8.030e-64
Identity = 128/292 (43.84%), Postives = 178/292 (60.96%), Query Frame = 1
Query:    4 GYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGFALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLVLRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPLNISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVANSAKTHMICLQGVGVHPRVAFDPPRALLGPVLP-GAPWARAIVAMRNDGAVPIEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL 876
            G++ ++++ DFG+V+ G  + + F + NTG+    S+  DK +    GF++EP+RV RL E  +   T TFQAR+   +G     + + VKNGP +LL L+A V VP +A+S   LE+G VVVGRS     Q HN  PV  +W LK P+  S  RD   F + P+GG L PG R NV +EF+PLEG+ Y  K+P+++  + +T  I   G G   RV+F+PP A LGP+LP G P  R I  M+N+    IEV+SLDFD QY  EE  L  A GY + ++LR+P R PGE L
Sbjct: 1544 GFILSQYILDFGNVVSGTHRVKKFLLTNTGQV-PTSFQIDKNVALAKGFSIEPERVVRLLEKKSIEFTVTFQARKNGRHGTHGANIFLEVKNGPCSLLTLKANVTVPDIAISQDSLEYGQVVVGRSLVMHTQFHNTSPVGVEWSLKKPIGSS--RDVGYFRMEPQGGVLHPGTRCNVRIEFIPLEGRLYHVKVPVKINANPRTRAISCSGEGTELRVSFNPPMAELGPLLPFGTPVERHIT-MKNESDYAIEVYSLDFDHQYKDEEDVLRNASGYSDDELLRLPLRLPGEPL 1831          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130991 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTZ1_9STRA2.190e-207100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5K5Z3_9PHAE1.470e-8050.17MSP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJY6_ECTSI4.390e-7949.48Hydrocephalus-inducing protein, Hydin-like protein... [more]
A0A7S2QVW6_9STRA1.030e-7144.67Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
F0Y448_AURAN7.770e-7044.97Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1V9Z071_9STRA1.430e-6946.74Hydrocephalus-inducing protein n=1 Tax=Achlya hypo... [more]
A0A067C275_SAPPC1.730e-6645.70MSP domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A485LSA9_9STRA2.410e-6442.27Aste57867_25117 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J2SKS6_9STRA3.280e-6442.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397B3D7_9STRA8.030e-6443.84MSP domain-containing protein (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:940691..942526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130991|gw1.8.30.1
BRITEko00000,ko01009
KEGG koko:K17570
GOsGO:0000226,GO:0001578,GO:0002064,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009888,GO:0009987,GO:0016043,GO:0021591,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032838,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060271,GO:0060322,GO:0060429,GO:0060438,GO:0060541,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158,GO:1990716,GO:1990718
Preferred nameHYDIN
Descriptionaxonemal central apparatus assembly
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28HT9@1|root,2QQ4F@2759|Eukaryota
Evalue7.19e-80
Seed ortholog2880.D7FJY6
Hectar predicted targeting categoryother localisation
TranscriptId131313
TrackFilteredModels1
ProteinId130991
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130991gene_2817Tribonema minus UTEX_B_3156 geneContig_8 940691..942526 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2817_1exon_2817_1Tribonema minus UTEX_B_3156 exonContig_8 940691..941254 +
exon_2817_2exon_2817_2Tribonema minus UTEX_B_3156 exonContig_8 942215..942526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2817CDS_2817Tribonema minus UTEX_B_3156 CDSContig_8 940691..941254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130991Trimin1|130991|gw1.8.30.1Tribonema minus UTEX_B_3156 polypeptideContig_8 940691..942526 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Trimin1|130991|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_8:940691..942526+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATGGCTACGTGGCGGCGCGGCACGTCGCCGACTTCGGCCACGTCATCTG
CGGCGCGACCAAGAAGCGCACGTTCCGCGTCGTCAACACGGGGCGCGCGG
GCGCCGTGTCGTGGGCCTTCGACAAGGCGCTGCTCGCGGGCAGCGGCTTC
GCGCTCGAGCCCGACCGCGTCGCGCGCCTCCCCGAGGGCGCCGCCGCGAG
CGTCACGGCGACGTTCCAGGCGCGCCGCGCCTTCGAGAACGGGCCGCGCG
AGGTGGCGCTCCCGATCGCCGTGAAGAACGGCCCCGCGACGCTCCTCGTG
CTGCGCGCATGCGTCGCGGTGCCCGCCGTCGCCGTCTCCGCAGCGCTGCT
GGAGTTCGGCGACGTCGTCGTCGGGCGCAGCTGCACGTCGTGCCTGCAGC
TGCACAACCCGGGGCCCGTGCCCGCGGACTGGGAGCTCAAGGCGCCGCTG
AACATCAGCGATGCGCGCGACGAGGCGCGCTTCGAGGTGGCGCCGCGCGG
CGGGCGCCTCGCGCCGGGCGCGCGCGCGAACGTCGCCGTCGAGTTCGTGC
CGCTCGAGGGGCAGGCGTACGCGACCAAGCTCCCGCTGCGCGTCGCCAAC
AGCGCCAAGACGCACATGATCTGCCTGCAGGGCGTCGGCGTGCACCCGCG
CGTCGCCTTCGACCCGCCGCGCGCGCTGCTGGGGCCGGTGCTGCCGGGCG
CCCCCTGGGCGCGCGCGATCGTCGCCATGCGCAACGACGGCGCCGTCCCC
ATCGAGGTCTTCTCGCTGGACTTCGACGCGCAGTACGGCGCGGAGGAGCG
CGCGCTCGCCGTGGCGCGCGGCTACGACGAGAGGGACGTCCTGCGCGTGC
CGCCGCGGCAGCCGGGAGAGGGGCTG
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protein sequence of jgi.p|Trimin1|130991

>Trimin1|130991|gw1.8.30.1 ID=Trimin1|130991|gw1.8.30.1|Name=jgi.p|Trimin1|130991|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
HGYVAARHVADFGHVICGATKKRTFRVVNTGRAGAVSWAFDKALLAGSGF
ALEPDRVARLPEGAAASVTATFQARRAFENGPREVALPIAVKNGPATLLV
LRACVAVPAVAVSAALLEFGDVVVGRSCTSCLQLHNPGPVPADWELKAPL
NISDARDEARFEVAPRGGRLAPGARANVAVEFVPLEGQAYATKLPLRVAN
SAKTHMICLQGVGVHPRVAFDPPRALLGPVLPGAPWARAIVAMRNDGAVP
IEVFSLDFDAQYGAEERALAVARGYDERDVLRVPPRQPGEGL
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mRNA from alignment at Contig_8:940691..942526+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Trimin1|130991|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1836bp|location=Sequence derived from alignment at Contig_8:940691..942526+ (Tribonema minus UTEX_B_3156 )
CATGGCTACGTGGCGGCGCGGCACGTCGCCGACTTCGGCCACGTCATCTG CGGCGCGACCAAGAAGCGCACGTTCCGCGTCGTCAACACGGGGCGCGCGG GCGCCGTGTCGTGGGCCTTCGACAAGGCGCTGCTCGCGGGCAGCGGCTTC GCGCTCGAGCCCGACCGCGTCGCGCGCCTCCCCGAGGGCGCCGCCGCGAG CGTCACGGCGACGTTCCAGGCGCGCCGCGCCTTCGAGAACGGGCCGCGCG AGGTGGCGCTCCCGATCGCCGTGAAGAACGGCCCCGCGACGCTCCTCGTG CTGCGCGCATGCGTCGCGGTGCCCGCCGTCGCCGTCTCCGCAGCGCTGCT GGAGTTCGGCGACGTCGTCGTCGGGCGCAGCTGCACGTCGTGCCTGCAGC TGCACAACCCGGGGCCCGTGCCCGCGGACTGGGAGCTCAAGGCGCCGCTG AACATCAGCGATGCGCGCGACGAGGCGCGCTTCGAGGTGGCGCCGCGCGG CGGGCGCCTCGCGCCGGGCGCGCGCGCGAACGTCGCCGTCGAGTTCGTGC CGCTCGAGGGGCAGGTATGTACGGCGCGTATAGCGTTCTTCGACGGCGCA GTAGATGCGCGGAGAGGAGGCAATGCACCGCGTCGGTAGGCCACGTCGCG AAGCGGGGGGGGGAGGTCTGATTGAATCGTCCGTAGACATGAGAGTGATG AGGTGCACTGCGCTGACGCACCCGCCGGGCGCGCGCGCGAACGTCGCCGT CGAGCTCGTGTCGCTCGAGGGGCAGGTACGTATGTATATGTGGTCGTCGC GTTCGACGGCGCGCTGCAGACGCCGCTTGCGGAGAAGGCACCACGTCGCG TCGGTAGGCAGAGCGGCGATCGCCAAGGGGCGCGTCGTGTCGGCGGAATG TGAGGGTGATGAGGTGCGCTGCGCTGACAATGCACCTGCGAGACGCGCGC CACCGTCGCCTCCGCGTCCGTGCTGCTCGAGGGGCAGGTGTGCATCGTAT GTAAAGTGTGCTGACGGAAGAAGGAGGGCCAGAGCGCGGACGGAAGCGCA GGTGGCCATCAGAGCGTGGCCCATGCCTGGACGGTCTGCGCAGTGGCTGC GCGAAAGCGCTTGCTACTGCCGTGTACCAGTCTTGCTCAGCCATCGCGTT CGGGCCGCTCGAGGGGCGAGTCTCGTGAACAGTTGTGATGGCCGCCTGCC GACCGTGTTCTTAGTCTGGGCGCACTCTCTGCGCGCAAGCGGCATGCGTG GCAAAGCTGCCGCACATTGCCAATATCAGCAAGACTTGTGTGACGTGCCT GCAGAGTCGCGGCTGGCGGCTGCGTGCTGCACTTGCGCTCATGCACGCAG CATTCTGCACTCATCTCCTCCAATCAGAGCTCACATATCTGGAGCAGTCG CCAGAGTGCCTCCAATGCGCACGTGCACCGCCTGTCACGCCGCGCTCGCC CCCCCCCCCTCTCACGCTCAACGCGCTCCCGCGCCGCCTCCGCTGCCGCC GCCACGCCCGCGCGCGCCCCGCAGGCGTACGCGACCAAGCTCCCGCTGCG CGTCGCCAACAGCGCCAAGACGCACATGATCTGCCTGCAGGGCGTCGGCG TGCACCCGCGCGTCGCCTTCGACCCGCCGCGCGCGCTGCTGGGGCCGGTG CTGCCGGGCGCCCCCTGGGCGCGCGCGATCGTCGCCATGCGCAACGACGG CGCCGTCCCCATCGAGGTCTTCTCGCTGGACTTCGACGCGCAGTACGGCG CGGAGGAGCGCGCGCTCGCCGTGGCGCGCGGCTACGACGAGAGGGACGTC CTGCGCGTGCCGCCGCGGCAGCCGGGAGAGGGGCTG
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Coding sequence (CDS) from alignment at Contig_8:940691..942526+

>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Trimin1|130991|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_8:940691..942526+ (Tribonema minus UTEX_B_3156 )
CATGGCTACGTGGCGGCGCGGCACGTCGCCGACTTCGGCCACGTCATCTG
CGGCGCGACCAAGAAGCGCACGTTCCGCGTCGTCAACACGGGGCGCGCGG
GCGCCGTGTCGTGGGCCTTCGACAAGGCGCTGCTCGCGGGCAGCGGCTTC
GCGCTCGAGCCCGACCGCGTCGCGCGCCTCCCCGAGGGCGCCGCCGCGAG
CGTCACGGCGACGTTCCAGGCGCGCCGCGCCTTCGAGAACGGGCCGCGCG
AGGTGGCGCTCCCGATCGCCGTGAAGAACGGCCCCGCGACGCTCCTCGTG
CTGCGCGCATGCGTCGCGGTGCCCGCCGTCGCCGTCTCCGCAGCGCTGCT
GGAGTTCGGCGACGTCGTCGTCGGGCGCAGCTGCACGTCGTGCCTGCAGC
TGCACAACCCGGGGCCCGTGCCCGCGGACTGGGAGCTCAAGGCGCCGCTG
AACATCAGCGATGCGCGCGACGAGGCGCGCTTCGAGGTGGCGCCGCGCGG
CGGGCGCCTCGCGCCGGGCGCGCGCGCGAACGTCGCCGTCGAGTTCGTGC
CGCTCGAGGGGCAGGCGTACGCGACCAAGCTCCCGCTGCGCGTCGCCAAC
AGCGCCAAGACGCACATGATCTGCCTGCAGGGCGTCGGCGTGCACCCGCG
CGTCGCCTTCGACCCGCCGCGCGCGCTGCTGGGGCCGGTGCTGCCGGGCG
CCCCCTGGGCGCGCGCGATCGTCGCCATGCGCAACGACGGCGCCGTCCCC
ATCGAGGTCTTCTCGCTGGACTTCGACGCGCAGTACGGCGCGGAGGAGCG
CGCGCTCGCCGTGGCGCGCGGCTACGACGAGAGGGACGTCCTGCGCGTGC
CGCCGCGGCAGCCGGGAGAGGGGCTG
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