mRNA_2775 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130251
Unique NamemRNA_2775
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A835YME7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YME7_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.080e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG
Sbjct:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 75
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A6G0UKE8_9BILA (UBC core domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UKE8_9BILA)

HSP 1 Score: 105 bits (262), Expect = 9.190e-25
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+ + SSIF+ +DE + +LM+ +ITGP+DTPY +G+FEFD+F P+ YPNVPP+ Q +TTG+G VR+NPNLYA G
Sbjct:  384 LPLTYGSSIFVCMDESRVDLMKVLITGPEDTPYANGIFEFDVFFPSNYPNVPPKCQFLTTGNGTVRFNPNLYADG 458
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A5J4YG42_9CHLO (UBC core domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YG42_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 2.030e-24
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+ W SSIFL  D  + +L+RA+I GP D+PY +G F FDIFLPA YPN PP V  +TTG G++R+NPNLY CG
Sbjct:  355 LPLAWTSSIFLAADSSRLDLLRALIIGPADSPYANGCFLFDIFLPANYPNAPPSVHFLTTGGGRIRFNPNLYECG 429
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A7S1ZIC0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIC0_TRICV)

HSP 1 Score: 103 bits (257), Expect = 2.840e-24
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LPV+W SSIF+ +DE + ++M+A I  P+DTPY++G+FEFDIFLP  YPN PP+V LITTG   VR+NPNLY  G
Sbjct:  243 LPVHWASSIFVCIDEDRPDIMKACIMAPEDTPYENGVFEFDIFLPESYPNDPPKVHLITTGKNTVRFNPNLYQEG 317
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A2R6WNY5_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WNY5_MARPO)

HSP 1 Score: 103 bits (258), Expect = 3.170e-24
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+ W+SSI L VDE + +++RA+I GP+ TPYQ+GLF FDIFLP  YP VPP V  +TTG GKVR+NPNLY  G
Sbjct:  665 LPLEWESSIHLCVDESRVDVLRAMIVGPQGTPYQNGLFMFDIFLPPDYPQVPPHVHFLTTGGGKVRFNPNLYDSG 739
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.920e-24
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LPV  DSSIFL VDE + ++MRA+ITGPK TPY+ G FEFDI LP  YPN PP+V  +TTG G+VR+NPNLY  G
Sbjct:  726 LPVQPDSSIFLRVDEDRFDVMRAMITGPKGTPYECGCFEFDILLPPDYPNSPPKVHFLTTGSGRVRFNPNLYQTG 800
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: D8LTA3_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.960e-24
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+YW S+I + +DE + +L++A+I  P  TPY  GLFEFDI+ P QYP+VPP+V L+TTG G+VR++PNLYACG
Sbjct: 1071 LPLYWGSTIAVRMDEERPHLLKAMIAAPTGTPYDSGLFEFDIYCPPQYPSVPPKVNLMTTGRGRVRFSPNLYACG 1145
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A6H5JLB4_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.000e-24
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+YW+S I +  DE + +L++A+I  P  TPY  GLFEFDI+ P QYP+VPP+V L+TTG G+VR++PNLYACG
Sbjct: 1362 LPLYWESMIAVRTDEERPHLLKAMIAAPTGTPYDSGLFEFDIYCPPQYPSVPPKVNLMTTGRGRVRFSPNLYACG 1436
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A2K1JHY5_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHY5_PHYPA)

HSP 1 Score: 102 bits (255), Expect = 8.060e-24
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+ W+S I L VDE + +++RA+I GP  TPYQ+G+F FDIFLPA YP VPP V  +TTG GKVR+NPNLY  G
Sbjct:  668 LPLEWESGIHLCVDENRMDVLRALIIGPNGTPYQNGIFLFDIFLPADYPQVPPSVHFLTTGGGKVRFNPNLYDTG 742
[Close]
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Match: A0A5J4TA58_9EUKA (Putative Ubiquitin-conjugating BIR-domain enzyme (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TA58_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 8.330e-24
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPNVPPQVQLITTGHGKVRYNPNLYACG 225
            LP+   +SIF+ VDE  + L++A+I GP +TPY+ GLFEFDI +P QYP  PP+V+++TTG G VR+NPNLY  G
Sbjct:    8 LPLTKGASIFIAVDENSTQLIKALIVGPMNTPYEQGLFEFDILIPQQYPQAPPKVEIVTTGGGTVRFNPNLYDNG 82
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130251 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YME7_9STRA4.080e-50100.00Ubiquitin-conjugating enzyme/RWD-like protein (Fra... [more]
A0A6G0UKE8_9BILA9.190e-2560.00UBC core domain-containing protein n=1 Tax=Halicep... [more]
A0A5J4YG42_9CHLO2.030e-2460.00UBC core domain-containing protein n=1 Tax=Treboux... [more]
A0A7S1ZIC0_TRICV2.840e-2461.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A2R6WNY5_MARPO3.170e-2462.67Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
D7G0A1_ECTSI5.920e-2465.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTA3_ECTSI5.960e-2458.67UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLB4_9PHAE6.000e-2458.67UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A2K1JHY5_PHYPA8.060e-2461.33Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A5J4TA58_9EUKA8.330e-2456.00Putative Ubiquitin-conjugating BIR-domain enzyme (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:530315..532116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130251|gw1.8.18.1
BRITEko00000,ko00001,ko01000,ko04121,ko04147
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
KEGG koko:K03178,ko:K10586,ko:K10699
EC2.3.2.23,6.2.1.45
Descriptionubiquitin-protein transferase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5078@1|root,KOG0895@2759|Eukaryota
Evalue9.7e-25
Seed ortholog2880.D7G0A1
Hectar predicted targeting categoryother localisation
TranscriptId130573
TrackFilteredModels1
ProteinId130251
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130251gene_2775Tribonema minus UTEX_B_3156 geneContig_8 530315..532116 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2775_1exon_2775_1Tribonema minus UTEX_B_3156 exonContig_8 530315..530416 +
exon_2775_2exon_2775_2Tribonema minus UTEX_B_3156 exonContig_8 531994..532116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2775CDS_2775Tribonema minus UTEX_B_3156 CDSContig_8 530315..530416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130251Trimin1|130251|gw1.8.18.1Tribonema minus UTEX_B_3156 polypeptideContig_8 530315..532116 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2775 ID=mRNA_2775|Name=jgi.p|Trimin1|130251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_8:530315..532116+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGGTCTACTGGGACTCGAGCATTTTTCTCGTGGTCGACGAGGGCAA
GAGCAACCTCATGCGGGCAGTCATCACAGGCCCGAAGGACACACCCTATC
AGGACGGCCTGTTTGAGTTTGACATTTTCCTGCCGGCGCAGTACCCGAAC
GTGCCGCCGCAAGTCCAGCTCATCACCACCGGGCACGGCAAAGTTCGATA
TAACCCAAACTTATATGCATGTGGA
back to top

protein sequence of jgi.p|Trimin1|130251

>Trimin1|130251|gw1.8.18.1 ID=Trimin1|130251|gw1.8.18.1|Name=jgi.p|Trimin1|130251|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
LPVYWDSSIFLVVDEGKSNLMRAVITGPKDTPYQDGLFEFDIFLPAQYPN
VPPQVQLITTGHGKVRYNPNLYACG
back to top

mRNA from alignment at Contig_8:530315..532116+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2775 ID=mRNA_2775|Name=jgi.p|Trimin1|130251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1802bp|location=Sequence derived from alignment at Contig_8:530315..532116+ (Tribonema minus UTEX_B_3156 )
CTGCCGGTCTACTGGGACTCGAGCATTTTTCTCGTGGTCGACGAGGGCAA
GAGCAACCTCATGCGGGCAGTCATCACAGGCCCGAAGGACACACCCTATC
AGGTATGCAACGTTGGCTCAATCATATTTGCGGGGACCGTGTGCTGGTTG
TTGGCGACAGCTACTGCCCCGTAGAGTTCTGATGAACTGGTGGCGCAACT
GAGTTGTTGCTGGCAGTATGCGCGATGTCATGCCCTGCCGACGGCCTCCA
TAGCAAGCGAGGAGAATGGAAGGAGGAAAATGCGCTATCGGGTGCATGCC
GCAATGCCTGTAGTAGTGGCCGTCGAGCTGACGTACTCATATCAGCTGCA
CCTGCGCTGCCGTTAAGAGACCTGTCAATGGCACGCGACCATCGGCTGTC
AATCTCTGTTGACGAACTCATGAACGTGCATGCTCCCCTGTTGCTCTACA
CACCCTAGTCGGTCCGCCGCTGCCTGATCATCGTACCCCCCCCCCCCCCC
CCCCTACCCCCCCCCCCTTTTAACATTCCAGTCCTGCTTCGAGCCGCGCA
TTGATGTCTAACGCCTCATCGACTGCCATTGCCCTGCCTCGCATCGTTCA
AAACGATGAACCGCTGCAATGACGGTGGTTCGTCGGCTGCTCGCTATTGT
CACCCGTCCCCTCCTGCCGCCAGTACTCTGCAACTCTGTCTTCACAGGAT
GGGGGGGGCTTGGTCGCTGTCATGAACGGCGGTCGGGCAGCTGCCTCTGA
CCCGTCCTTTTTCACGGCGCTCGTCCCCTGCGTGCAAGGATGACCTGGTC
AAGTTTGAACATGCCAAAGGCCGCTTGACGGACGTTTCATCATTAGTTTC
TGTCAACGCCACATCACGAAGCGTGTGAAGTGCCACCGAAGTTCTCTCCA
TGCTCGAAGTTGGCAACCAGTGTGGAGCTGTAGTAGTAGTTGCCGTTATC
GCAGTGTAATGAGTACTGTAGTACATCGTTGGTTGGTGCCTAGCATAGTG
GCGCGTGCCTCATGAACAGTGATGATCAGCACGACAAACTTGCACTTTTC
CGGACGATTGAAGATGAACTGAAGCTGCTGGATCCGCCACTCGGAGCGAC
TGCCCGGCGGGCTTAATAGTCAAGGTGGGAGTTCCTGAAGAGAGGCTCAC
CCTACCTACCTGACATGCGGCGGCACTCACATGACAGGTCACCTTTCTTG
GCCGCACACTCAGTACGTTCGCCCCCCATTTTCCGCGCTGCGTCAAGCGT
TAGCTTGACGCATGCAGCTACTAGCAGATCAGATGGAATCTCAGGAACGC
TGATGGTGAGCAGCACCAAGCAGCGATATCTACAAGAGCCCGGGGCATGG
AACTACAAGTGACCCTTGAAAAGTCGGTGGTAGACTTGAACTATCAACCG
CCCAAAAGAGCGACAGTGCGAAGGACAGAATGTTCGTGCTGGACGTGTCA
GATGCGTCCACCTTCTTCACTCGCACCATTATTCCATGTCCACCCCTCCC
CACTTTACGCCAGGTATAAGAAACCGCGCCGCCCGGGGGCCCCCTGGGCC
TGATTTCGACAAGCCGGTACCTGATACCGCTGTTGCCATACCTATGCCCC
TGCGCACTCCATTGTTGACAATAGTCTTTCAGCCGTTTATCAGCACCGCC
GTTGCTCGCGTGCCGCATGTTTCCCGCAGGACGGCCTGTTTGAGTTTGAC
ATTTTCCTGCCGGCGCAGTACCCGAACGTGCCGCCGCAAGTCCAGCTCAT
CACCACCGGGCACGGCAAAGTTCGATATAACCCAAACTTATATGCATGTG
GA
back to top

Coding sequence (CDS) from alignment at Contig_8:530315..532116+

>mRNA_2775 ID=mRNA_2775|Name=jgi.p|Trimin1|130251|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_8:530315..532116+ (Tribonema minus UTEX_B_3156 )
CTGCCGGTCTACTGGGACTCGAGCATTTTTCTCGTGGTCGACGAGGGCAA
GAGCAACCTCATGCGGGCAGTCATCACAGGCCCGAAGGACACACCCTATC
AGGACGGCCTGTTTGAGTTTGACATTTTCCTGCCGGCGCAGTACCCGAAC
GTGCCGCCGCAAGTCCAGCTCATCACCACCGGGCACGGCAAAGTTCGATA
TAACCCAAACTTATATGCATGTGGA
back to top