mRNA_2870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|92414
Unique NamemRNA_2870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A836C9S3_9STRA (Peroxiredoxin-like 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S3_9STRA)

HSP 1 Score: 417 bits (1073), Expect = 1.250e-146
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 2 
Query:   47 MGNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGKAPVENSSAPPEETKA 670
            MGNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGKAPVENSSAPPEETKA
Sbjct:    1 MGNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGKAPVENSSAPPEETKA 208
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: D7FW74_ECTSI (Peroxiredoxin-like 2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW74_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 9.460e-67
Identity = 116/202 (57.43%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   50 GNSSS-AEPAPVTLDMIKGIQLK---------PIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGK 625
            GN+S+ A   PVT + IK I L+         P+  +  GG++ A  LW +QPAIVFVVRRPGC LCRE A+DL  +  +F A GV L GVVHE+LG + F+  FF +G +YFDE+KAFF +LG RW GL  LM PSVI NA+RA  KGV+GN +GEGRLLGGLLVVG GD G+ FEHRE  FGDHASMD I+AA    V K
Sbjct:   12 GNTSAKAASEPVTTEKIKDIGLQRMTVAGRDTPVATA--GGSIPAGDLWKDQPAIVFVVRRPGCALCREHAQDLSNKQPDFAAKGVKLVGVVHEKLGVEEFSG-FFKNGEIYFDEEKAFFNALGMRWEGLSSLMKPSVISNAKRASAKGVKGNLKGEGRLLGGLLVVGSGDSGIAFEHREAVFGDHASMDAIMAAVDTVVPK 210
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A6U1MDW2_9STRA (Peroxiredoxin-like 2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MDW2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 5.770e-54
Identity = 94/166 (56.63%), Postives = 118/166 (71.08%), Query Frame = 2 
Query:  146 VIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADV---FAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVE---GNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGK 625
            V A  LW + PA+VFVVRRPGC LCRE+A  L E+  +F  LGV LT VVHEE   D    F   F+ +G LYFDE+K F++SLG R LGL+GL+YPSVI+N +R K K  E   GN EGEGRLLGGL V+G+G+EG+ + HRE+ FGDHA ++++LAAC K   K
Sbjct:   60 VPARELWKDSPAVVFVVRRPGCPLCREQAAGLMEQKQDFDRLGVKLTAVVHEEGPNDAAKQFKDGFWQNGELYFDEEKGFWQSLGKRRLGLQGLIYPSVIRNMRRMKKKDSESFNGNMEGEGRLLGGLYVMGQGEEGIAYTHRERVFGDHAPIEEVLAACEKVSKK 225
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: T1G1A3_HELRO (Peroxiredoxin-like 2A n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G1A3_HELRO)

HSP 1 Score: 159 bits (402), Expect = 4.280e-45
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 2 
Query:   47 MGNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDIL 598
            M +S+S      T+  +K I LK I  S DGG+  AS LW +  A++ VVRRPGC+LCREEA +L +   +F     SL  VVHE +G + F + FF DG ++ D ++ F+     RW+ L GL+ PSV  +  RAK K V GN EGEGRLLGGL V+G GD+G+L EHRE  FG+H   + +L
Sbjct:    1 MDSSTSGSHEKATIQYLKNINLKKIDGSDDGGSFKASELWKDGGAVIMVVRRPGCILCREEAAELTKLKQKFNDKNFSLFAVVHELMGVEEF-RNFF-DGEVFLDPERKFYGPK-ERWMSLAGLLRPSVWLSLIRAKRKHVSGNTEGEGRLLGGLFVIGPGDKGILLEHRESEFGNHVDRELLL 181
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A4P9ZX66_9FUNG (Peroxiredoxin-like 2A n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZX66_9FUNG)

HSP 1 Score: 163 bits (412), Expect = 5.620e-45
Identity = 86/186 (46.24%), Postives = 123/186 (66.13%), Query Frame = 2 
Query:   83 TLDMIKGIQLKPI-GHSVDGG----TVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKA-LGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGS---RWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRK 613
            TL  + G+ L+ + G S D      T+ + SLWA +P +VFVVRRPGC+LCREEA  L  + A  +  LGV++  VVHEELGA  F ++F+  G LY D +K FF+++G    +W     ++ PSV KN +RA   GV+GN++G+GR++GGL +V   D G+ FE++EK FGDHA +D +LA CR+
Sbjct:   10 TLTQLVGLPLRRLDGVSADATPETTTIQSQSLWASRPVLVFVVRRPGCLLCREEAHTLAAQRATIETELGVTMVAVVHEELGALEFQEQFWR-GPLYLDSEKGFFKAIGGGKLKWSSAWTMLLPSVFKNGRRATKAGVKGNFKGQGRIMGGLYIVKPEDRGIAFEYKEKVFGDHAPIDQVLAVCRE 194
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A1Y1YVC6_9FUNG (Peroxiredoxin-like 2A n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YVC6_9FUNG)

HSP 1 Score: 157 bits (397), Expect = 2.640e-44
Identity = 82/182 (45.05%), Postives = 116/182 (63.74%), Query Frame = 2 
Query:   89 DMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEF-KALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGS---RWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVG 622
            ++I+ + LK +    DG  + AS LW   PA++ VVRRPGC LCR+EAKDL ++  +  +  G+ +  VVHEELG + F +EFF  G +Y DE K FF++LG     W     L+ P  I N   +   GV+GN++GEGR+ GGL +VGKGD+GV++E++EK  GD A M++IL  C K  G
Sbjct:    7 NLIREVALKNVK---DGSKIKASQLWENSPALIMVVRRPGCKLCRKEAKDLADQRTQITEKWGIPMYAVVHEELGVEEFNQEFF-QGTVYHDENKGFFKALGGGKLSWANWSSLLNPYTIYNYVTS---GVDGNFQGEGRIYGGLYIVGKGDKGVIYEYKEKYLGDIAPMEEILKVCEKVAG 181
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A0K2U2I7_LEPSM (Peroxiredoxin-like 2A n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2U2I7_LEPSM)

HSP 1 Score: 154 bits (390), Expect = 6.590e-43
Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 2 
Query:   83 TLDMIKGIQLKPIGHSVDG--GTVI-ASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACR 610
            +L+ +K IQL+ +  S+ G  GTV+ A  LWA++ A++ VVRRPGC+LCREEA +  +  ++  AL + L G+VHEE GA+ FA+ FF +  +YFD  K FF     R + L GL+    I     A  KGV GN EG+G LLGG  V+G G +GVL+EHRE  FGDH +M+DIL+  R
Sbjct:   33 SLNYLKDIQLRKLTDSLYGKKGTVVKAEDLWAKKGAVIMVVRRPGCILCREEALEFMKIKSDLSALDIPLVGIVHEEEGAEEFARSFFTNSDVYFDIDKKFFGPKERRIM-LTGLLNFRFILKTFGAWRKGVSGNLEGDGSLLGGTFVMGPGSKGVLYEHRETYFGDHVNMEDILSIAR 210
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: C1BSQ8_LEPSM (Peroxiredoxin-like 2A n=5 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BSQ8_LEPSM)

HSP 1 Score: 149 bits (377), Expect = 5.820e-41
Identity = 82/183 (44.81%), Postives = 112/183 (61.20%), Query Frame = 2 
Query:   71 PAPVTLDMIKGIQLKPIGHSVDG--GTVI-ASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACR 610
            P   +L  +K  QL+ +  S+ G  GT++ A  LWA++ A++ VVRRPGC+LCREEA +  +  ++  AL + L G+VHEE GA+ FA  FF    +YFD  K FF     R + L GL+    I     A  KGV GN EG+G LLGG  V+G G EGVL+EHRE  FGDH +M ++L+  +
Sbjct:   29 PKNASLKYLKDTQLRKLTDSLYGKKGTIVKAEDLWAKKGAVIMVVRRPGCILCREEALEFMKIKSDLSALDIPLVGIVHEEEGAEEFASNFFTSSDVYFDINKKFFGPKERRIM-LTGLLNFRFILKTFGAWKKGVSGNLEGDGSLLGGTFVMGPGSEGVLYEHRETYFGDHVNMTEVLSIAK 210
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: UPI001CF1C6CB (peroxiredoxin-like 2A n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF1C6CB)

HSP 1 Score: 149 bits (376), Expect = 6.910e-41
Identity = 87/190 (45.79%), Postives = 114/190 (60.00%), Query Frame = 2 
Query:   50 GNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEF--FGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRK 613
            GNS+  +     L  +  I+LK +  S  G  +IAS LW +  A++ VVRRPG  LCREEA +L     E    GV+L GVVHEE GA    KEF  F    LY DE+K F+     RW+ + G +  SV ++  RAKGKGV+GNW GEGRLLGG+ VVG GD+G+L +H+E+ FGD   +  +  A  K
Sbjct:   25 GNSARPD-----LQYLSAIKLKSLDGS--GKHLIASELWRKSGAVIMVVRRPGXPLCREEALELSSLIPELDRKGVNLVGVVHEEKGA----KEFQPFLSSPLYLDEEKKFYGP-EQRWMSISGFLRLSVWRSFFRAKGKGVKGNWLGEGRLLGGVFVVGPGDQGILLDHKEREFGDKVELQKVRDAVSK 202
[Close]
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Match: A0A2T7PYM4_POMCA (Peroxiredoxin-like 2A n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PYM4_POMCA)

HSP 1 Score: 147 bits (372), Expect = 2.740e-40
Identity = 84/182 (46.15%), Postives = 111/182 (60.99%), Query Frame = 2 
Query:   68 EPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRK 613
            +P P TL  +  I L+ +   +      A  LW    A++ VVRRPGC+LCREEA +L +  AE     V L  VVHE LG + F+  F GDG+ + D +K F+  +  R   L GL+  +V KN  R+  +GV GN EGEGR+LGG+ VVG  D+G+L+EHREK FGD AS+ DI AA RK
Sbjct:   31 QPEPATLAYLADITLQTL--DLMPRKFKAKELWEASGAVIMVVRRPGCLLCREEALELSKLKAELTLRHVPLYAVVHESLGVEQFSPFFKGDGI-FLDAEKHFYGPVERRMF-LSGLLRATVWKNIIRSWKRGVNGNLEGEGRILGGMFVVGPADQGILYEHREKEFGDMASISDIAAAVRK 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|92414 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9S3_9STRA1.250e-146100.00Peroxiredoxin-like 2A n=1 Tax=Tribonema minus TaxI... [more]
D7FW74_ECTSI9.460e-6757.43Peroxiredoxin-like 2A n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6U1MDW2_9STRA5.770e-5456.63Peroxiredoxin-like 2A n=1 Tax=Fibrocapsa japonica ... [more]
T1G1A3_HELRO4.280e-4546.74Peroxiredoxin-like 2A n=1 Tax=Helobdella robusta T... [more]
A0A4P9ZX66_9FUNG5.620e-4546.24Peroxiredoxin-like 2A n=1 Tax=Dimargaris cristalli... [more]
A0A1Y1YVC6_9FUNG2.640e-4445.05Peroxiredoxin-like 2A n=1 Tax=Basidiobolus meristo... [more]
A0A0K2U2I7_LEPSM6.590e-4347.49Peroxiredoxin-like 2A n=3 Tax=Lepeophtheirus salmo... [more]
C1BSQ8_LEPSM5.820e-4144.81Peroxiredoxin-like 2A n=5 Tax=Lepeophtheirus salmo... [more]
UPI001CF1C6CB6.910e-4145.79peroxiredoxin-like 2A n=2 Tax=Acropora TaxID=6127 ... [more]
A0A2T7PYM4_POMCA2.740e-4046.15Peroxiredoxin-like 2A n=1 Tax=Pomacea canaliculata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:1468929..1474340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|92414|CE92413_46
BRITEko00000,ko00001,ko01000
KEGG rclassRC00671
KEGG ReactionR09506
KEGG Pathwayko00590,ko01100,map00590,map01100
KEGG koko:K15717
EC1.11.1.20
GOsGO:0002682,GO:0002761,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016209,GO:0042221,GO:0044424,GO:0044464,GO:0045595,GO:0045637,GO:0045670,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1902105,GO:1903706,GO:1990748,GO:2000026
Preferred nameFAM213A
Descriptionprostaglandin-F synthase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4498@1|root,KOG4498@2759|Eukaryota
Evalue1.81e-68
Seed ortholog2880.D7FW74
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeroxiredoxin-like protein
Ec32 orthologEc-01_003660.1
TranscriptId92736
TrackFilteredModels1
ProteinId92414
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|92414gene_2870Tribonema minus UTEX_B_3156 geneContig_8 1468929..1474340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|92414Trimin1|92414|CE92413_46Tribonema minus UTEX_B_3156 polypeptideContig_8 1468975..1474205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2870_1exon_2870_1Tribonema minus UTEX_B_3156 exonContig_8 1468929..1469147 +
exon_2870_2exon_2870_2Tribonema minus UTEX_B_3156 exonContig_8 1470906..1471082 +
exon_2870_3exon_2870_3Tribonema minus UTEX_B_3156 exonContig_8 1472134..1472218 +
exon_2870_4exon_2870_4Tribonema minus UTEX_B_3156 exonContig_8 1473353..1473453 +
exon_2870_5exon_2870_5Tribonema minus UTEX_B_3156 exonContig_8 1474115..1474340 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2870UTR5_2870Tribonema minus UTEX_B_3156 five_prime_UTRContig_8 1468929..1468974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2870CDS_2870Tribonema minus UTEX_B_3156 CDSContig_8 1468975..1469147 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2870UTR3_2870Tribonema minus UTEX_B_3156 three_prime_UTRContig_8 1474206..1474340 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Trimin1|92414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=808bp|location=Sequence derived from alignment at Contig_8:1468929..1474340+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGCAATAGCACCTAAGCACACCTGCAAGCGTGTGTACGTATAACGATGG
GGAACTCTTCTAGCGCTGAGCCTGCGCCTGTGACGTTGGATATGATCAAG
GGAATTCAGCTGAAGCCTATCGGCCACTCGGTCGACGGAGGTACCGTCAT
CGCTAGCAGTTTATGGGCGGAGCAGCCAGCTATTGTCTTCGTTGTCAGAC
GCCCGGGCTGCGTTCTATGCCGTGAGGAGGCCAAGGACTTGTGCGAGCGC
GCGGCGGAGTTCAAGGCGCTGGGCGTGAGCCTGACCGGCGTGGTGCACGA
GGAGCTGGGCGCTGACGTGTTTGCCAAAGAGTTCTTCGGCGACGGCCTGC
TGTACTTCGATGAGAAGAAGGCCTTCTTTGAGAGCTTGGGATCCAGGTGG
CTGGGCCTCAAGGGTCTCATGTACCCCTCCGTAATCAAGAACGCGCAGCG
CGCCAAGGGCAAGGGCGTGGAGGGCAACTGGGAGGGCGAGGGCCGACTGC
TTGGGGGTCTGCTGGTGGTGGGCAAGGGCGACGAGGGAGTCCTGTTTGAG
CACCGCGAGAAAGCATTTGGGGACCACGCCAGCATGGACGACATACTGGC
GGCGTGCAGGAAAGCTGTGGGTAAGGCACCTGTGGAGAACAGCAGTGCGC
CCCCCGAAGAGACCAAAGCCTAAGTAGGTGCCACCCCTCGGCAGGGCTTC
CTCACTCCCAATCATGAGGCTGCGGTGGCGCTAGCCTCAAAAGTGCAAGG
CCGACAGAGAAGCAGCACACCCTGTATTTTACAGTTTCAACACCATTGCC
ACTGGCAA
back to top

protein sequence of jgi.p|Trimin1|92414

>Trimin1|92414|CE92413_46 ID=Trimin1|92414|CE92413_46|Name=jgi.p|Trimin1|92414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MGNSSSAEPAPVTLDMIKGIQLKPIGHSVDGGTVIASSLWAEQPAIVFVV
RRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDG
LLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGR
LLGGLLVVGKGDEGVLFEHREKAFGDHASMDDILAACRKAVGKAPVENSS
APPEETKA*
back to top

mRNA from alignment at Contig_8:1468929..1474340+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Trimin1|92414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5412bp|location=Sequence derived from alignment at Contig_8:1468929..1474340+ (Tribonema minus UTEX_B_3156 )
AGGCAATAGCACCTAAGCACACCTGCAAGCGTGTGTACGTATAACGATGG
GGAACTCTTCTAGCGCTGAGCCTGCGCCTGTGACGTTGGATATGATCAAG
GGAATTCAGCTGAAGCCTATCGGCCACTCGGTCGACGGAGGTACCGTCAT
CGCTAGCAGTTTATGGGCGGAGCAGCCAGCTATTGTCTTCGTTGTCAGAC
GCCCGGGCTGCGTTCTATGGTGAGAGACCGCGCCTGGATATTTTTCGCCA
AAGCAGAAGCAGCATCATGCGCTAGCATCATTGTCAGAAACGCCAAGCTT
CACACGATCCGACAATTGGCACAATTGTTCTCGTTGCCGATACCCGCACT
AATGCTTTCATCTTTCACCAACTGTCGTCTCTAGCACACTCCTGAGACCT
TTACATTTGTATACATGGACAGCAGTATCAATATGAGGGTAACTGCACCA
GCGAGACCGCGTTCCGAGACTTGAGAAGCGGCGCAGTGAAACGCTCTAAC
CATCAAGCTTTTAAGATCAGGTTCTCAAGAATTAGGATGTAGCGCCTCAT
TTGCTCATACTTTAGATTTTGTCCTCTTCTGCAATTGTTTACTGGCGCAA
CACCAAGCCAGCCCCGCAATCGTTTCTCTTGTGGCCAGAAAGATGAGCTG
CTTCAGCTGCTGTGTTCGCAAACCATATTTAGAGTCTTGTGTCTGCACAA
CATCTCCTGTGCCTGTGTCGTGTTTATGCATTGTTCACTCAGAGGGTGTG
GCCAGGCGACCCCTGATCCTGACCCCTAACCCTGATTGTTTGCAAACCAT
GAAGCAGTCAGCAGTATTTGTTTTCCTGAATGGCTCATCATGTATTGGAA
AACGAATCAAAAGATCGTAAAGCTCTAGGTGACAAGGGATGGTTAGCTGC
AAGTGCCTTCCACCAATGATCGTGGTCGCCGCTGCTGCAGTCATTGGCCA
CAAATCAAACAGTGCCACCATAACCACAGTAGGCAAAAAGACTTCTCTGT
GCAAGCTTTTTAGCATTGGAGGCATGGGTGTTCAGTATGGGAAGGTCTCA
TGTGTTTGATATGCCAGCTCCAGCCGGTAGCCCCAAACACAGAGGTTCAG
CAGCTAGCGACAGCGCTCTTGAATGCGTGTAGTGCAGAAGGTGATGAACG
GGTTTAGAACCAATCCGTGCGGTATTACTACAACTCATGCTGCAGCAGTG
ACGACGCCAAAGACCCGTGCGAGCGTGCGCAAAAAAAAATCATTTTTTCA
TTGCCGACGATGATGCAGCTGCGGACAACACCTTTTCAACAATTGATTAA
GATGTCTTGTCACCAATAATGCTGCAGCCGCGAGGAAGTGCTGTGCGAGC
GCGCGGCGGAGTTCAAGCAGCTGGGCGTGAGCCTGAAATGTGACTGTGGA
ATTTATTTTTTTGGAGACAATGATGCAGCCACGGAGAGTACAGTAGTAAT
TTTACGATCTATTACAATGCACTTGTACAACCGATGCTGCAGCCGTGAGG
AGGCCAGGGACCTGTGCGAGCGCGCGCAACAAAACATTTTTTTATCGATG
ACGATGATGCAGCCGCGAAAGAAACCCATTTCCCCATGTTTACGATATGA
TGTCGTAACCAATGCAGCCGCGAGGAGGCCAAGGACCTGTGCGAGCGCGC
GGCGGACGGAGTTCAAGCAACTGGGCATGAGCCTGACCTGAGAAAAATTG
TGATTGCGGAATTCAATTGCTTTGAAGACCATGAGGGGAAGAACATTATC
TTTTCTGATCGACCACAATGCACTTTCACAACCGATGCTGCAGCCGCGAG
GAAGCCAAGGATCTGTGCGAGCGCGCGGCGGAGTTCAAGGCGCTGGGCGT
GAGCCTCACATGCCAAAAACTGTGATTGTGAAATCAAAATGTTAAAAAAA
GACAATGATGCAGCCGCGAGGAGAAAAATAATCATTTCACAATCGATCAC
AATGCACTGTTGCAACTGCTGCTGCAGCCGTGAGGAGGCCAAGGACTTGT
GCGAGCGCGCGGCGGAGTTCAAGGCGCTGGGCGTGAGCCTGACCGGCGTG
GTGCACGAGGAGCTGGGCGCTGACGTGTTTGCCAAAGAGTTCTTCGGCGA
CGGCCTGCTGTACTTCGATGAGAAGAAGGCCTTCTTTGAGAGCTTGGGAT
CCAGGTCAGGCATTCATTCATTCACGAGTTATTTATGCGTTGATAAGTCT
TTTCAATGCTAGAGCTGTTGTTTGTCATGCGGACCGTTGTTGATCGGTTC
TGTAGGTTGCGGAGCTAGGGTTTTGACACAGTCACGAAGGTATTCAAGTC
CTATGTCATGGACGTTGTCTCCGTTGACGTTTCTAGCGCTTTGAGCACTT
TTGGAGCAGGTTCTCCTACGCATCCTTACCGACAATAATTGTGAATGTAT
TTCATTGTCAGCAATCAACTCAATAAAATATGACGACAACACATTGCCTC
CTACCAAGGCCATTTGATAGATGAACGCAATGCATGCGTTCATGAAAGCA
TGACTGCCCGGTGCCTCCTGCCAACGGCAGCTTATAAAATATGACGGCAA
CACATTGCCTCCTACCAAGGCCATTTGAAAGATGAACGCAATGCATGCGT
TCATGAAAGCATGACTGCCCGGTGCCTCCTGCCAACGGCAGCTTATAAAA
TATCACGACAACACATTGCCTCCTACCAAGGCCATTTGAACGATGAACGC
AATGCATGCGTTTATGAAAGCATGACTGCCCGGTGCCTTCTGCCAACGGC
AGCTTATAAAGCAAATGTCGAAGGCAGGCCCCACGCATACCACACCTATG
TCGTTGACAATTGTGCATCGTGATGATCAGGCAGGTCAGTGGGCCACAAT
TGTGCAGCGTGGTAATCAGGCAGGGCAGTGGGCCAGACGCCGTCAGTGCA
CCTAGAGTAGAAATACTATACTGTGCAAGTTTGGCTATTCCTCAAATAGG
CAAACGTGCACACACGGCAGGGCAGGCAGGCTCACCAGGTGGCGCTATGC
CATGCCAGTAGCGGGAAAAACAGCTGCTGCACAGCAGTCATGTGTGCATG
TCGAGATCAATTATCCCCACTACACAATAAGCATTTGTTGCACTTGATTG
TATCTCTGTCTAAAAAAGCCGAAGCTCTGGCACTGGCACTGCGTGGTGTG
CACCCAACCGGGCTTGCCTCTCAAGTTCCGTCGCTCACCGCGCTTGTGTG
TGCAGGTGGCTGGGCCTCAAGGGTCTCATGTACCCCTCCGTAATCAAGAA
CGCGCAGCGCGCCAAGGGCAAGGGCGTGGAGGGCAACTGGGTGAGCCGTG
CTGCAGCATCACCCCCATCTTTGTCTTTCCAAACGTCTCATACGTTTAGG
TTCATTCGAGGCCCCCCTGTTCAAAAAATAGCCTATATTGTAGGACACAT
CTACTGTTGCACTTCACCATCATTTGTGAGCAACGGCCCCTCCGTTGTCA
AGAACGCGCAGCGCGCCAGCGGCAAGGGCATGGAGGGCAACTGGGTGAGC
CATGCTGCAATGTCTTTTTAAAAACATTTTGCCTTTGCTTCTGTCTCCTG
GTCTTGTTAGAGCTGCCTGTTCGTGAAGCAGCCTATCACTTAGAGAAGAA
GAAAAACACCTGTTGCACTTACACTCAAATGAGCCGTGCTGCAATATCAT
CACTGCCTTGTTTTTAAATTCGTCTCCTGGTCGCATTTGATGCACTTGCC
CGTTTGATAAGTAGCCAATTAACAGGGAACACCTACTGTTGCACTTCACC
TGTTTGAGTTGAAATAGCCTAATCAAGTTGTAAACATCTGCTGTTGCACT
TCAACTTCACCTGTGAGCAGCAGTGCCCAACTCGGTGTTGCAGTCGCGCA
GGTTTTCTGCTTTGTGTCTGCACCTGACACGAGTGCGTGCGGCGTGGCTT
TCTGCAGGGTGCAGAAGCGTTGGTCGGCGCCGAGTGGGGAAACGCATGAC
TGTGAGGTCATTTTGTGCATCTGCAGAAAATAATCCATCGTGCTTCGCTG
AACGCAACAAACGCTGCACCGCAATTTACACGCAATGCCTCGCATGACAT
TTGCCAAGTGGCCTGGCGCTGCACGTCTATTTTTGCAGGTCATTTAACGT
CGAACTTCTCCCCAAAACAACGTACATCATGTGGGTACCTCAAGTGCCAT
TGCGAAAGCAAACATTGTTGTAGACGCAATCACAAGGAGGGCTTGCGCCC
GCAGCAGATGCACCGACGCAGTCACACTTTTTAGTCTAGCTCACAACCGC
CTTTTCGTGAATTTCAACTGACTTTCACAAATCTTGCATCATAATTTCAG
GCGGGCGAGGGCTGACTGCTGGGGGCCTGCTGGCCGTGAGCAACCGACGC
CATCAAATGCCGAACTCGCAATCAACTTTCATGTATTTGACCAACTTTTT
GTGAATTTCGTGTCATTGTCGCAGGAGGGCGAGGGCCGACTGCTTGGGGG
TCTGCTGGTGGTGGGCAAGGGCGACGAGGGAGTCCTGTTTGAGCACCGCG
AGAAAGCATTTGGGGACCACGCCAGGTATCTAGCCCTAGTTGTTGCAGTT
CCGATATGACTGAAGTATACTTTGAAGTGTGAGCTCGGTTTGGGGGACCA
CGCCAGGCATCTAGCCCTAGCCTCAGGGCGCGCATGCTGCCTTCACGTAC
TGCGTTTCCAGTGTGCCTGAAGTAAACTGTCAAGTGTGAACGTATTGCAA
ATGACTCGTGGCCCTAGTGGGGGCGGGGGATGGTTGATTGCGCACGGGCG
CAGAATGCATCCTCTGAGTGCTGCTGTAGCGGACAAACGGCTTTCTGCAC
CTGTTCACTTCATGCACCATGCATGCGTGAGGAAATCGAACTGTAGTCGA
TGTGCGATCTGGCCAATCGAAGACACTGACCACGAACTTAAAATAACTAT
CACCACTGATTTTTTTTTCAGAAGGAAAAAACACCTTATTTAGTCGATTC
CTGGGGTTTAAAGAACACGAAAGGATGTAGCTGAGGTTTTTAGTTTGATC
AACTTGAGGTGGCAATAAAATTTTTGAGTTGCCCATAAATTATACTTTGA
AGCACATGATCAGGGTTTGCAGAGAGTGAAAGGATGTAGCTGTGGTTTCT
AAATTTGAACAACTTGAGGTGCCAACAAACTATTTGAGGCGCCAATAAAT
TGACCCCAACGACGTTGTTTTCTCTGCACTGCACAGCATGGACGACATAC
TGGCGGCGTGCAGGAAAGCTGTGGGTAAGGCACCTGTGGAGAACAGCAGT
GCGCCCCCCGAAGAGACCAAAGCCTAAGTAGGTGCCACCCCTCGGCAGGG
CTTCCTCACTCCCAATCATGAGGCTGCGGTGGCGCTAGCCTCAAAAGTGC
AAGGCCGACAGAGAAGCAGCACACCCTGTATTTTACAGTTTCAACACCAT
TGCCACTGGCAA
back to top

Coding sequence (CDS) from alignment at Contig_8:1468929..1474340+

>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Trimin1|92414|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_8:1468929..1474340+ (Tribonema minus UTEX_B_3156 )
ATGGGGAACTCTTCTAGCGCTGAGCCTGCGCCTGTGACGTTGGATATGAT
CAAGGGAATTCAGCTGAAGCCTATCGGCCACTCGGTCGACGGAGGTACCG
TCATCGCTAGCAGTTTATGGGCGGAGCAGCCAGCTATTGTCTTCGTTGTC
AGACGCCCGGGCTGCGTTCTATGCCGTGAGGAGGCCAAGGACTTGTGCGA
GCGCGCGGCGGAGTTCAAGGCGCTGGGCGTGAGCCTGACCGGCGTGGTGC
ACGAGGAGCTGGGCGCTGACGTGTTTGCCAAAGAGTTCTTCGGCGACGGC
CTGCTGTACTTCGATGAGAAGAAGGCCTTCTTTGAGAGCTTGGGATCCAG
GTGGCTGGGCCTCAAGGGTCTCATGTACCCCTCCGTAATCAAGAACGCGC
AGCGCGCCAAGGGCAAGGGCGTGGAGGGCAACTGGGAGGGCGAGGGCCGA
CTGCTTGGGGGTCTGCTGGTGGTGGGCAAGGGCGACGAGGGAGTCCTGTT
TGAGCACCGCGAGAAAGCATTTGGGGACCACGCCAGCATGGACGACATAC
TGGCGGCGTGCAGGAAAGCTGTGGGTAAGGCACCTGTGGAGAACAGCAGT
GCGCCCCCCGAAGAGACCAAAGCCTAA
back to top