mRNA_2786 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|91876
Unique NamemRNA_2786
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|91876 vs. uniprot
Match: A0A835YTX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.250e-57
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 2 
Query:   32 MMSFRVALLALAVTLVGVHGTCTTKVYQAGGQQVCVDPCSASQVVYDSSGKAICLQYTSTSNSTKKICPQSNIYYTQGGTPVCVLTPKKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPYCLV 433
            MMSFRVALLALAVTLVGVHGTCTTKVYQAGGQQVCVDPCSASQVVYDSSGKAICLQYTSTSNSTKKICPQSNIYYTQGGTPVCVLTPKKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPYCLV
Sbjct:    1 MMSFRVALLALAVTLVGVHGTCTTKVYQAGGQQVCVDPCSASQVVYDSSGKAICLQYTSTSNSTKKICPQSNIYYTQGGTPVCVLTPKKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPYCLV 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|91876 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTX0_9STRA2.250e-57100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:657238..659328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|91876|CE91875_28
Hectar predicted targeting categorysignal peptide
TranscriptId92198
TrackFilteredModels1
ProteinId91876
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|91876gene_2786Tribonema minus UTEX_B_3156 geneContig_8 657238..659328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|91876Trimin1|91876|CE91875_28Tribonema minus UTEX_B_3156 polypeptideContig_8 657269..659270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2786_1exon_2786_1Tribonema minus UTEX_B_3156 exonContig_8 657238..657416 +
exon_2786_2exon_2786_2Tribonema minus UTEX_B_3156 exonContig_8 657714..657768 +
exon_2786_3exon_2786_3Tribonema minus UTEX_B_3156 exonContig_8 659069..659328 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2786UTR5_2786Tribonema minus UTEX_B_3156 five_prime_UTRContig_8 657238..657268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2786CDS_2786Tribonema minus UTEX_B_3156 CDSContig_8 657269..657416 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2786UTR3_2786Tribonema minus UTEX_B_3156 three_prime_UTRContig_8 659271..659328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2786 ID=mRNA_2786|Name=jgi.p|Trimin1|91876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=494bp|location=Sequence derived from alignment at Contig_8:657238..659328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCAAGAGTGCAAGAGCGCAACGCAGATCATGATGAGCTTCCGTGTCG
CGCTGCTCGCCTTGGCAGTGACGCTGGTGGGCGTGCATGGCACGTGCACC
ACAAAGGTGTATCAAGCTGGCGGGCAGCAAGTGTGTGTCGATCCTTGCAG
TGCATCGCAGGTGGTGTATGATTCATCAGGCAAGGCCATCTGCCTTCAGT
ACACCTCCACGTCGAACTCGACCAAGAAGATCTGCCCCCAATCCAACATC
TACTACACCCAGGGCGGCACCCCCGTGTGCGTGCTGACCCCCAAGAAGAC
GGCGCTGTGTCCTCCCGACAGCATCGCGTACAGCAACGGCACCACTCCCG
TGTGCGTCATGCTCAGGAGCGGCAACGGCGCGTGCCCCTCCAGCGATATC
AGGTACAGCAACAGCGTGCCGTACTGCCTGGTATAGGGGCCTGCTCCGGC
GAGTTCAACTTCAAGTTGAAGATGGGCGGCCTTTGCACTTCAAG
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protein sequence of jgi.p|Trimin1|91876

>Trimin1|91876|CE91875_28 ID=Trimin1|91876|CE91875_28|Name=jgi.p|Trimin1|91876|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MMSFRVALLALAVTLVGVHGTCTTKVYQAGGQQVCVDPCSASQVVYDSSG
KAICLQYTSTSNSTKKICPQSNIYYTQGGTPVCVLTPKKTALCPPDSIAY
SNGTTPVCVMLRSGNGACPSSDIRYSNSVPYCLV*
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mRNA from alignment at Contig_8:657238..659328+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2786 ID=mRNA_2786|Name=jgi.p|Trimin1|91876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2091bp|location=Sequence derived from alignment at Contig_8:657238..659328+ (Tribonema minus UTEX_B_3156 )
CAGGCAAGAGTGCAAGAGCGCAACGCAGATCATGATGAGCTTCCGTGTCG
CGCTGCTCGCCTTGGCAGTGACGCTGGTGGGCGTGCATGGCACGTGCACC
ACAAAGGTGTATCAAGCTGGCGGGCAGCAAGTGTGTGTCGATCCTTGCAG
TGCATCGCAGGTGGTGTATGATTCATCAGGTAAGACAGCCGTGGCCGTGC
CTTACGCCCTCGAGAGCCCGCAGCATACACCTTGAGAACTTCATGTTTGC
CCTTTGTCATAACTCGCACCACTTGTGCACACGGACTGCGGGACTACAGA
ATGGCTGGCGGCGCTTGCATGTGATGCGTGCGCTGTTATGCTAGGCCCGG
CTGAGCCTGAAAGCCGAGACGGTAACGTGAGATGCGTTGGTGAGCCTCAC
TGAAATCTTCGTCGAACACAAGCAAAGCACTGTTTCACGATCAAGTACCC
TTGTTCGGCGCATCATCTTCTCGCAGGCAAGGCCATCTGCCTTCAGTACA
CCTCCACGTCGAACTCGACCAAGAAGATCTGGTAAGGGTCGTTGGAGAGT
TTTCTCTTGATCATGGCAATCTTGTAATCTTGAGGCACCATGCTCTTCAA
TGGCACCTGAACAGCACTCCCTCGAAGCCGAAACCAACACGACGGATCTC
CAGAGACCGGATCCAGGTGTCTGGACCGGTCGCGTCAGAAATGACGACGG
CGAGGCATGTGACACCAGTCATCGACTCAAACAGTCTGTTTGTGGCGGTG
CTTGCCGCCTCCATGGATGGGGCGTGCACGAACGTGTGCCCGGTGGTGTT
GCTCTGGATGTCGATGTTGACCACAAAAATGTCCAGGACAGCTGCCCCTC
TGGCTAGCTCGTTTGTGCGGACAGCCCGCATGCCATCGTCCTGCCACGCC
AACACCCGCAGCGCTTGCTGGGACCTGGACAGCGGGTCAGCCGCATTTCT
CGCAGGTGCAACCACGCGCGAACCAAAGTTCGAACAAACTTCAAGGATTA
ACTTCACACTTCAGAGGAACAGGGCATGCATCTGCACAGAACAACCCTGC
TCTCTGTTTGGTTGCTCACTGATCGGCAAAATTTTGAAGTTCAGAATTTG
CCCCCCTCTGACCCCAACTCTAAGTTCAACAGAGCCTTGTTGTCGAGGCC
GAAAAAGTGCGCGCAGGCATTGCATCATAACATTGCCCTCTGGCGCACAC
AGGCGCTCTCCTTATGAGGTGGGCTTGACTGTATGTTCAGCGCGCATCAG
CAAATCTCAACAACCACATGAATCATTCGAATCAACACGTCTGTCCGTCC
TCAAATTTCAACACAAGATGTATCAGATTTCAACACAAGGTTTATAAATC
AGATTTCAACACGAGATTTATCATTTATCTGGTGTTGAAGACTGAGGCCG
GACAGACGTGTGGATTCAGGGGTCCCGGGTAAGTAATAGTGTCACTGTCG
CCGCGACATGCCTGCTACATTGACTGGAGCAAGAACCAAAGGAAACGTGA
AGACACTGTCAAGACGACTGCACAACAATTCTACAGCCAGCGTAACCATC
GCCCTTGAAGTCATTGAAGTGACCGCCTACACCGACCACTAGCGGGTGCC
CTGTGGGCTGTGCAAACTTCTTGGTCCCCCCGCCGCTGCGAAGGACCGGT
AGACAAATACCCCACTGCATTGTTATCACAAAGTCGATGAAGTGATCACT
CAAACTTTGTGAGGTGCAGCCTGTATACATATATGCCACGCGTCGCCACG
AGGCAGTCTAGACCCCCCCTTCAAAGTTGAACTTCACTGCCACTGCTAAC
AACAATCCCGCGTGCTTTCCCTCCCCCGCAGCCCCCAATCCAACATCTAC
TACACCCAGGGCGGCACCCCCGTGTGCGTGCTGACCCCCAAGAAGACGGC
GCTGTGTCCTCCCGACAGCATCGCGTACAGCAACGGCACCACTCCCGTGT
GCGTCATGCTCAGGAGCGGCAACGGCGCGTGCCCCTCCAGCGATATCAGG
TACAGCAACAGCGTGCCGTACTGCCTGGTATAGGGGCCTGCTCCGGCGAG
TTCAACTTCAAGTTGAAGATGGGCGGCCTTTGCACTTCAAG
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Coding sequence (CDS) from alignment at Contig_8:657238..659328+

>mRNA_2786 ID=mRNA_2786|Name=jgi.p|Trimin1|91876|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_8:657238..659328+ (Tribonema minus UTEX_B_3156 )
ATGATGAGCTTCCGTGTCGCGCTGCTCGCCTTGGCAGTGACGCTGGTGGG
CGTGCATGGCACGTGCACCACAAAGGTGTATCAAGCTGGCGGGCAGCAAG
TGTGTGTCGATCCTTGCAGTGCATCGCAGGTGGTGTATGATTCATCAGGC
AAGGCCATCTGCCTTCAGTACACCTCCACGTCGAACTCGACCAAGAAGAT
CTGCCCCCAATCCAACATCTACTACACCCAGGGCGGCACCCCCGTGTGCG
TGCTGACCCCCAAGAAGACGGCGCTGTGTCCTCCCGACAGCATCGCGTAC
AGCAACGGCACCACTCCCGTGTGCGTCATGCTCAGGAGCGGCAACGGCGC
GTGCCCCTCCAGCGATATCAGGTACAGCAACAGCGTGCCGTACTGCCTGG
TATAG
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